mRNA_S-dermatodea_contig8570.16731.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8570.16731.1
Unique NamemRNA_S-dermatodea_contig8570.16731.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8570.16731.1 vs. uniprot
Match: D7FM02_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM02_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.550e-32
Identity = 67/128 (52.34%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:   52 MSYPTAQNTSWE---RRPR--TLVLAPRGNKVVEREPKPADPNAPPGDQAPAAEAAEEAGPEEKAK--LGQWHQILVCPCYNPPILLYSLLCXXXAMGDVGCYVRDNWLCYPAYCLAAPCPCCVGETR 414
            MSYPT  N+ WE   RRP   T+VLAPR   ++  E                    E  G EEK    LG+WHQ  +CPC NP I+LYSL  XXXAMGD+GCY+R+NW+CYPAYCL A CPCCVG+TR
Sbjct:    1 MSYPTNDNSGWEPPSRRPSEGTIVLAPRRRSIIRDE------------------EGEGEGVEEKPDPPLGRWHQHSLCPCRNPNIMLYSLCXXXXAMGDIGCYLRENWMCYPAYCLGASCPCCVGDTR 110
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8570.16731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM02_ECTSI1.550e-3252.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8570contigS-dermatodea_contig8570:1047..4962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000370.1
Exons3
Model size416
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8570.16731.1prot_S-dermatodea_contig8570.16731.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8570 1047..4960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925352.354628-CDS-S-dermatodea_contig8570:1046..12981622925352.354628-CDS-S-dermatodea_contig8570:1046..1298Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8570 1047..1298 +
1694079875.4639256-CDS-S-dermatodea_contig8570:1046..12981694079875.4639256-CDS-S-dermatodea_contig8570:1046..1298Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8570 1047..1298 +
1622925352.3666885-CDS-S-dermatodea_contig8570:3356..34521622925352.3666885-CDS-S-dermatodea_contig8570:3356..3452Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8570 3357..3452 +
1694079875.4757059-CDS-S-dermatodea_contig8570:3356..34521694079875.4757059-CDS-S-dermatodea_contig8570:3356..3452Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8570 3357..3452 +
1622925352.3793044-CDS-S-dermatodea_contig8570:4894..49601622925352.3793044-CDS-S-dermatodea_contig8570:4894..4960Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8570 4895..4960 +
1694079875.4858234-CDS-S-dermatodea_contig8570:4894..49601694079875.4858234-CDS-S-dermatodea_contig8570:4894..4960Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8570 4895..4960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8570.16731.1

>prot_S-dermatodea_contig8570.16731.1 ID=prot_S-dermatodea_contig8570.16731.1|Name=mRNA_S-dermatodea_contig8570.16731.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=138bp
WVLVSHLSPYSVPTERQMSYPTAQNTSWERRPRTLVLAPRGNKVVEREPK
PADPNAPPGDQAPAAEAAEEAGPEEKAKLGQWHQILVCPCYNPPILLYSL
LCCCCAMGDVGCYVRDNWLCYPAYCLAAPCPCCVGETR
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mRNA from alignment at S-dermatodea_contig8570:1047..4962+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8570.16731.1 ID=mRNA_S-dermatodea_contig8570.16731.1|Name=mRNA_S-dermatodea_contig8570.16731.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3916bp|location=Sequence derived from alignment at S-dermatodea_contig8570:1047..4962+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGGTACTCGTTTCCCACTTATCTCCGTACTCTGTACCAACAGAGCGGCA
GATGTCGTACCCCACGGCACAAAACACCAGCTGGGAGCGGCGACCAAGGA
CCCTGGTGCTGGCGCCTAGGGGGAACAAGGTCGTCGAGCGAGAACCCAAA
CCGGCAGACCCGAACGCACCACCAGGCGATCAGGCGCCAGCAGCAGAAGC
AGCAGAAGAAGCTGGGCCAGAAGAGAAGGCCAAGCTTGGACAATGGCACC
AGGCAAGACATAAAGAAGATCATTGCTGCATGATTGAGGATGTGGCTGGC
CATCGCTATAGCAGCTGCAGCAGTATTAGAGGGCGAGAGTTTAAGAGATG
CGCTGCCTCCTCGATCGATGTCTGCGTGCAGAATGCAGAACGCACGAGTG
TCACCAGTCGCGAGGATTGATGATGGCCCACGCCGCTCTTTTTGTTTTGG
TTTGGCGAAGGAACATCTATTTTACAAGTAAAAAGTAAAAAGTATCATAG
AACATTTCATCAAGTTGCGCCGCCTATTTATGTTTTGTGTTGCGTTTTTG
ATGCAATGCGTCGAAAAAAGGGGCTGCACCCGCCCCTCCCCAAAGGGCCC
GACTGGAGTGCCTCGAGCAGAGAGGCTTGCATCGTCGCCCTCTAAAAAGA
CAAGAGCATACGCGTGTTCAAATGTAGTCTATGCCTTCTCTAACGACAGG
GGGTCGAGCTTATAGATAGGATTAAGCTACTTTGTATGATAGCTCTACGC
ATTGAGCCTATTATATGTGACATCTATTAATACTCTATTTTATCAGAATC
CGAGACGTGTTCTCATTTCTGGTTTAGAATCTTCACCCTCGCGGCCTGTC
AGACCAGTCATCGATCGTCAAAACTGTGGAAATTTGTTGGAGGCGAGCGG
TCCAGGAATTCTTCTTATTTGTGGTCCCCTTCCATCATAGTCTACAGCAA
AAACTCCACTCTCCAAGCCTGAAGCCAAGGACTGCTCGACCTCCACCACA
CACACATGCAATTCACTTGTAGCATACAAGTAGAGCTCTAGAGATATGTG
AGACATCCTATCATATGATACGATACCCCATTATTCCACGCGCTGACCCT
CTCACATGAGGCTGAACCTCACATGAAGCCGCCAACTCTCAGCGCCGCGC
GGAATCCGTCCAGAATGGCGCCAACAAACACAAGGCCTGGTCGTGATTTT
TTACCGTCCAGCCCCGGAACGCATACAAGTATCGTATATTTGATTGATTG
ATTGATTGATTGATTTGCACACGTATAGCCGATCGGCTTAATCCGACCCG
ACTTGTGGTCAGACACGCAAAGAGTCAAGGAGAAAAATAACTATTAACAA
TCAGAACTCTACTTCTACTATACACCGTACCGTCCCTGGTACTTACTACC
AGTATGGTACAAGAAATAATAAATAGTACCCCAGATGTAGAGAAAACGCT
AGAAGAGGACTCGGACTCGGACAATGCTCCCTCGCCTCTCCACAGGTCCT
TTTTGTACTACTGTAGCAGGTACACATTTTGAGCCGGTTACTCACAGGGC
AAAATGAACAAACAACATGGTCTTAGTGGGCAATTGCCAGTGAGGGCTGG
CACCGGATTGAGCGGGGCTATTCCGCTTTAGCTGGGAGCTGTTGCACCTT
GTTGCAAGGAGCTTCTATTGGCGTTGTTGTGGAAGAGCACCCCTCGATCT
GCACAGAGTATTAATAGTACTGCTGTGGAGGGAAACCTGTGTCGGTGCTC
CTATGTATGGAGTCGGACCTAAAAATCGTTTTATATAAGACGCATATCAT
ACAGACACATGTACAATAATTGATCGTCTCGTCCAATCGGGAAGTGGTCC
ATCAACAGGTTCATGCACCCGCCGGGGTATCAAGACGCTCAGGTTGCGTT
GTTATTAACCGGTAAAAGGGTGCGGCTCAAAGTGCAATGACGAGCATTGA
AGATGATGGGCACTGAACTGCTTCGGGTTCCATCCAAAGCCTGTGACCTT
TGGAAAAAGACCTCTATATAATATTATATATCGGTCTTTTTCCAAAGCCT
GTGACCAGGGGAAATGCCACCGATCCGTTGAGGGCTGTATGTGCGGCATG
CATGTTCATCGCCTTCGTTGAGGGCTTTTGCGAATGTTCAGAATCGAAGA
CAAAGAATGAAATGTCCTAAATGCTTCGATTCATACAAGTAAGTGCATGT
GTCTACCCTGCAATTTACCTAACATACACAAGTACAGGTAATTGTTAAGT
AAACCAGAAGAATGCCGCCGATGTATCATCCTCGTTCACATTGTGTTCTC
CGTTGCCCAGATTTTGGTGTGCCCCTGCTACAACCCGCCAATCCTTCTCT
ACAGCTTGCTCTGCTGCTGCTGCGCCATGGGGGACGTCGGCTGCTACGTC
CGTGATGTGAGCGAGAGTTCCTCTGCTTTTTGAATACTATAATAGTATGG
ACTATTCATATTGTAGCCCTCGGCAGGGGGCGATGGGGCATATCCATATT
TGAGAGCTTGCAGTTATCCGTACTGTATGAGTATTAATAGAAGGTAGCCA
CGGGAGGTGAAAAATACTTCTACTCTTGGTCGCTCAACTCCAACATCAAG
TTGTTTGGCATCACTCAAAATCGCGTAGGAGTTTAGTGGATATATCGGCC
TCAAAAATCGTATAGGAAAGCACGGACAACGCGGTATTGATTAATAAAGG
TACTATTGATACGTACATATGGTACGACACATGACGACCGTTAACGCTAA
CGCGCGACGTTTTCAGCTCATATAGTGTTCCCCATCCATCCGCAGCAGAA
GCATCGACGTGCGGACTGTATTTAAGAGCCTCTTATTATTGAATCACGAG
CTATCAACCCGCAAGCACCGCTTTTGCCCTCCCGGCTTCACTTTTGCCGA
CGAGGTCGGCGCAGAACATTTAAGTGGTATCACCGGTGGAGGGGCGAGGG
AGCATTGTCCGATTCCGATTCCTCTTCTAGCGTTTTCCTACAATATCCTA
TTAATAGTATACATCTGGGGTTACTATTTCTTCTATTTTGCGCAATAGTA
ATATTAAGTAAGTATGATACCAGGGACGGTATGGTGTAATGCAGAAATAC
GATTGGTTATTTGCTCCTTGACTCTTTGCGTATATGGCCACAAGTTTGAT
TGATTGATTTCATTTGATTTGATTTGCACACGTACAGCCGATCGGCTAAT
TCTGACCCGACTTGTGATCAGATGCTATATATAGAATATAGTTAAGCAAA
GAGTCAAGGAGAAAAACAAAAACTCTACGGTACTTCTACGATGCAGCATA
CAGTCCCTGGTACTCTATTGTACAAGAAATAAGAGATTGTACCCCAGATA
TAGAAAAGAGCGCCAGAAGAAGACTCGGAATCGGACAATGCTCCCTCGTC
TCTCCACCAGGTCCTTATGGTATTAGGGCCAAACTATACGTGTGCAAAAC
AATCCATGATGTCAATCAACCGCTCTCACGTATATCCCGTTCACGCCCCC
ACCAACATTGCCTCTCACCCGAGCCCTTTTCAATGGTACATTTATATTGT
ATTGCTTTTGGTACATATGATGAGCAGCGCGGTGATGGGCCCCCGGGCGT
CGACCCAACCGCCCTAACCCGTACCCTGTAAATCCTAGCCCCACCGCATA
GCGCCCGTTCAGAACCTCCAACCGAAGACGTGCAGCACTCAAACGCAGGT
GCTTCGTGTTTGCAAGGAGTCTGAGAAAAGTCGTAAGTTTCGAAAGTCCG
GAGAGGACCACCCAGCAAAGCATTTCCTTGAGATTGTCGACTGGGTGCTA
AGCCCTACTGTTGTCTATTGCTCCCTGGCTCGTGCCTGCTGCCTTCAGAA
TTGGCTGTGCTACCCGGCCTACTGCCTCGCCGCGCCGTGCCCGTGCTGCG
TGGGCGAAACTCGCGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8570:1047..4962+

>mRNA_S-dermatodea_contig8570.16731.1 ID=mRNA_S-dermatodea_contig8570.16731.1|Name=mRNA_S-dermatodea_contig8570.16731.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at S-dermatodea_contig8570:1047..4962+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGGTACTCGTTTCCCACTTATCTCCGTACTCTGTACCAACAGAGCGGCA
GATGTCGTACCCCACGGCACAAAACACCAGCTGGGAGCGGCGACCAAGGA
CCCTGGTGCTGGCGCCTAGGGGGAACAAGGTCGTCGAGCGAGAACCCAAA
CCGGCAGACCCGAACGCACCACCAGGCGATCAGGCGCCAGCAGCAGAAGC
AGCAGAAGAAGCTGGGCCAGAAGAGAAGGCCAAGCTTGGACAATGGCACC
AGTGGGTACTCGTTTCCCACTTATCTCCGTACTCTGTACCAACAGAGCGG
CAGATGTCGTACCCCACGGCACAAAACACCAGCTGGGAGCGGCGACCAAG
GACCCTGGTGCTGGCGCCTAGGGGGAACAAGGTCGTCGAGCGAGAACCCA
AACCGGCAGACCCGAACGCACCACCAGGCGATCAGGCGCCAGCAGCAGAA
GCAGCAGAAGAAGCTGGGCCAGAAGAGAAGGCCAAGCTTGGACAATGGCA
CCAGATTTTGGTGTGCCCCTGCTACAACCCGCCAATCCTTCTCTACAGCT
TGCTCTGCTGCTGCTGCGCCATGGGGGACGTCGGCTGCTACGTCCGTGAT
ATTTTGGTGTGCCCCTGCTACAACCCGCCAATCCTTCTCTACAGCTTGCT
CTGCTGCTGCTGCGCCATGGGGGACGTCGGCTGCTACGTCCGTGATAATT
GGCTGTGCTACCCGGCCTACTGCCTCGCCGCGCCGTGCCCGTGCTGCGTG
GGCGAAACTCGCAATTGGCTGTGCTACCCGGCCTACTGCCTCGCCGCGCC
GTGCCCGTGCTGCGTGGGCGAAACTCGC
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