prot_S-dermatodea_contig857.16730.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig857.16730.1
Unique Nameprot_S-dermatodea_contig857.16730.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length274
Homology
BLAST of mRNA_S-dermatodea_contig857.16730.1 vs. uniprot
Match: D7FGR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR9_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 6.000e-81
Identity = 134/201 (66.67%), Postives = 166/201 (82.59%), Query Frame = 0
Query:   79 KEVVLRLAPADTVSPLVVSFANQTMPADVGSLQFEVHEGENEGREGQRVLMGSGSRMDYWGLNFGPGSESYDLCRFMVGVENEESGELTLHESGHAYALRQSVSGREDNVEDHAMEGLEWKQRRDALVNQFGSKKKKAAIRSRDANVVQAGAVVGGAALSRVLGKALKE--GGAADAASG---ATXXXAGAVKEARRRFLP 274
            +EVVLR A   +  P++VSFANQT+P D+ +++F +HE ++E REGQ+++MG G RMDYWGLNFGPG+ES DLCRF+VGVE+  +GEL LHE+GHAY+LRQSV  ++DN+ED AMEGLE+KQR+DALVNQFGSKKKKAAIRSRDANV+QAG+VVGG+A+SRVLG+ALKE  GG A    G   AT     AV+EARRRFLP
Sbjct:   45 REVVLRRAAEGSAGPILVSFANQTVPGDMSAVEFRMHEADDEEREGQKIVMGDGGRMDYWGLNFGPGAESNDLCRFLVGVEDGATGELILHEAGHAYSLRQSVGDKDDNIEDFAMEGLEYKQRKDALVNQFGSKKKKAAIRSRDANVIQAGSVVGGSAMSRVLGRALKEEEGGGAGGVDGDPTATDGALAAVEEARRRFLP 245          
BLAST of mRNA_S-dermatodea_contig857.16730.1 vs. uniprot
Match: A0A0E9NJN0_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NJN0_SAICN)

HSP 1 Score: 58.2 bits (139), Expect = 4.910e-6
Identity = 38/140 (27.14%), Postives = 74/140 (52.86%), Query Frame = 0
Query:   89 DTVSPLVVSFANQTMPADVGSLQFEVHEGENEGREGQRVLMGSGSRMDYWGLNFGPGSESYDLCRFMVGVENEESGELTLHESGHAYALRQSVSGREDNVEDHAMEGLEWKQRRDALVNQFGSKKKKAAIRSRDANVVQA 228
            D  +P + +F   T P ++    ++  + +        VL GS  R+++   NFG G E   LC + VG+ ++ + ++ +  + H +  R   + +  + +D   +  ++++ R+AL   FG+KK K AI+S+DAN V+A
Sbjct:   28 DARTPYIATFPGVTAPQNLTFDAYKRKKPKKSSEAKDVVLHGSTDRIEFDAQNFGHGEEG--LCDYYVGIYDKSTNKVEIVPAPHVHVTRTVKALKNISRDDKGRQ--QYREARNALGEAFGTKKAKQAIKSQDANKVEA 163          
BLAST of mRNA_S-dermatodea_contig857.16730.1 vs. uniprot
Match: A0A6P8H3H3_ACTTE (DNA-directed RNA polymerase I subunit RPA49-like n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H3H3_ACTTE)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-5
Identity = 39/148 (26.35%), Postives = 74/148 (50.00%), Query Frame = 0
Query:   91 VSPLVVSFANQTMPAD-----VGSLQFEVHEGENEG---REGQRVLMGSGSRMDYWGLNFGPGSESYDLCRFMVGVENEESGELTLHESGHAYALRQSV----SGREDNVEDHAMEGLEWKQRRDALVNQFGSKKKKAAIRSRDANVV 226
            + PLVV F N  + A         + F  +  ++     ++ +R L      M+Y G NFG  +   +LC+++VGV +++SG++ +++S   + ++  V    +    N E    + L + ++ D L   FGS KKK ++ SR  N++
Sbjct:   16 LQPLVVQFTNGCLKAGRKGTKKDGINFSYYRWKDSSDIRKKHRRTLTAKADHMEYVGQNFGQFARVNNLCKYLVGVLDKDSGKMKIYDS-QLFMMQPKVLEKAAASSPNDEVDGKKELSFIEKSDRLTEAFGSSKKKRSVASRKKNLI 162          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig857.16730.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FGR9_ECTSI6.000e-8166.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0E9NJN0_SAICN4.910e-627.14Uncharacterized protein n=1 Tax=Saitoella complica... [more]
A0A6P8H3H3_ACTTE1.060e-526.35DNA-directed RNA polymerase I subunit RPA49-like n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009668RNA polymerase I associated factor, A49-likePFAMPF06870RNA_pol_I_A49coord: 109..274
e-value: 6.6E-29
score: 101.0
IPR009668RNA polymerase I associated factor, A49-likePANTHERPTHR14440FAMILY NOT NAMEDcoord: 89..232

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig857contigS-dermatodea_contig857:16533..21995 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig857.16730.1mRNA_S-dermatodea_contig857.16730.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig857 16533..21996 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig857.16730.1 ID=prot_S-dermatodea_contig857.16730.1|Name=mRNA_S-dermatodea_contig857.16730.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=274bp
RARSGLLIRRRSTSQAALTSTNPQLAMGKKRASLAAGISSGGGEKSKKSK
KRRRESNPGASGGGGGASEKRRSSSSSSKEVVLRLAPADTVSPLVVSFAN
QTMPADVGSLQFEVHEGENEGREGQRVLMGSGSRMDYWGLNFGPGSESYD
LCRFMVGVENEESGELTLHESGHAYALRQSVSGREDNVEDHAMEGLEWKQ
RRDALVNQFGSKKKKAAIRSRDANVVQAGAVVGGAALSRVLGKALKEGGA
ADAASGATDGAAGAVKEARRRFLP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009668RNA_pol-assoc_fac_A49-like