mRNA_S-dermatodea_contig8565.16727.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8565.16727.1
Unique NamemRNA_S-dermatodea_contig8565.16727.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8565.16727.1 vs. uniprot
Match: D7G2X8_ECTSI (Nicotianamide aminotransferase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X8_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 5.490e-105
Identity = 152/193 (78.76%), Postives = 167/193 (86.53%), Query Frame = 3 
Query:  432 MDPSPANLAQGVAHWDPPPAAMRQIEQGRRGGGRLTDSANHRYGPALGLPALREVLCEKLVHENGLDMTGQEVMVTAGGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGTLAECGWDPDTLLPDMATLKREIEKGVKMVVITTPGNPTGAVCPQETMEEIASLCKKHGAWLVVDEAYEHFLHDGER 1010
            M+P P NLAQGV HWDPPPAA+RQ+E G      L + ANH+YGPALGLPALRE L  KL  ENGLDMTGQEVMVT+GGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGTL EC WD  TLLPDM  L+RE+++GVKMVVITTPGNP+GAVCP+ET+EEIA LC ++ AWLVVDEAYEHFLHDGER
Sbjct:    1 MNPPPVNLAQGVCHWDPPPAALRQMESG------LREPANHKYGPALGLPALREALVAKLEEENGLDMTGQEVMVTSGGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGTLVECDWDTSTLLPDMEQLRREVQRGVKMVVITTPGNPSGAVCPRETLEEIARLCGENNAWLVVDEAYEHFLHDGER 187
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BLAST of mRNA_S-dermatodea_contig8565.16727.1 vs. uniprot
Match: A0A835YRY9_9STRA (Nicotianamide aminotransferase A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRY9_9STRA)

HSP 1 Score: 240 bits (612), Expect = 6.590e-73
Identity = 118/216 (54.63%), Postives = 155/216 (71.76%), Query Frame = 3 
Query:  360 PRLSKRVRDTEPAHIEAVLSRYADMDPSPANLAQGVAHWDPPPAAMRQIEQGRRGGGRLTDSANHRYGPALGLPALREVLCEKLVHENGLDMTGQEVMVTAGGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGTLAECGWDPDTLLPDMATLKREIEKG-VKMVVITTPGNPTGAVCPQETMEEIASLCKKHGAWLVVDEAYEHFLHDG 1004
            P +S+R+ +T+  HIE VL+RYA +DP PANLAQGV+ W+PPP+  R    G      L+++  H+Y   LGL  LR+ L  KL  + GLDMTGQE+MV AG NQAF   ALALLDPGD+V+L RP+Y +H C++QLAG  +  C ++  TLLPDMA L++ + +  VKMVVITTPGNP+GAV  +  +EEIA LC++HG WLV+DEAY  F+HDG
Sbjct:    4 PSVSQRIINTDVPHIEIVLNRYAHLDPPPANLAQGVSRWNPPPSVFRAASDGS-----LSETRTHKYNAVLGLADLRDALHSKLEQDCGLDMTGQEIMVCAGANQAFVNAALALLDPGDKVVLPRPYYFSHLCSLQLAGACVEYCDFNKATLLPDMAQLRQLLRQPEVKMVVITTPGNPSGAVYSRAMIEEIAQLCREHGTWLVIDEAYCDFVHDG 214
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BLAST of mRNA_S-dermatodea_contig8565.16727.1 vs. uniprot
Match: A0A4D9CSE6_9STRA (Aminotran_1_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSE6_9STRA)

HSP 1 Score: 182 bits (461), Expect = 9.870e-51
Identity = 87/162 (53.70%), Postives = 114/162 (70.37%), Query Frame = 3 
Query:  528 GRLTDSANHRYGPALGLPALREVLCEKLVHENGLDMTGQEVMVTAGGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGTLAECGWDPDTLLPDMATLKREIEKG-VKMVVITTPGNPTGAVCPQETMEEIASLCKKHGAWLVVDEAYEHFLHDGER 1010
            G+    + H YGP  G   L   L  KL  EN LD+TGQ+++VT G NQAFA++ALAL DPGDR +L  P+Y +H  A+Q+A   + +  WDP T LPD+  L+  +    VKMVV+TTPGNPTGAVCP+  ++E+A+LC+K GAWLVVDE+YEHFLH+G R
Sbjct:   27 GKQESRSLHGYGPIAGNADLLAALTRKLETENRLDLTGQDILVTGGANQAFALLALALCDPGDRAVLFAPYYFSHLVALQIAQAEVVKGRWDPATWLPDVEHLRSLLAASPVKMVVLTTPGNPTGAVCPESLLKEVAALCRKAGAWLVVDESYEHFLHEGAR 188
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BLAST of mRNA_S-dermatodea_contig8565.16727.1 vs. uniprot
Match: W7TTY9_9STRA (Transaminase transferring nitrogenous groups n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTY9_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.350e-50
Identity = 87/162 (53.70%), Postives = 114/162 (70.37%), Query Frame = 3 
Query:  528 GRLTDSANHRYGPALGLPALREVLCEKLVHENGLDMTGQEVMVTAGGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGTLAECGWDPDTLLPDMATLKREIEKG-VKMVVITTPGNPTGAVCPQETMEEIASLCKKHGAWLVVDEAYEHFLHDGER 1010
            G+    + H YGP  G   L   L  KL  EN LD+TGQ+++VT G NQAFA++ALAL DPGDR +L  P+Y +H  A+Q+A   + +  WDP T LPD+  L+  +    VKMVV+TTPGNPTGAVCP+  ++E+A+LC+K GAWLVVDE+YEHFLH+G R
Sbjct:   27 GKQESRSLHGYGPIAGNADLLAALTRKLETENRLDLTGQDILVTGGANQAFALLALALCDPGDRAVLFAPYYFSHLVALQIAQAEVVKGRWDPATWLPDVEHLRSLLAASPVKMVVLTTPGNPTGAVCPESLLKEVAALCRKAGAWLVVDESYEHFLHEGAR 188
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BLAST of mRNA_S-dermatodea_contig8565.16727.1 vs. uniprot
Match: A0A7S0XXZ5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XXZ5_HEMAN)

HSP 1 Score: 167 bits (423), Expect = 2.710e-44
Identity = 104/223 (46.64%), Postives = 134/223 (60.09%), Query Frame = 3 
Query:  369 SKRVRDTEPAHIEAVLSRYADMDPSPANLAQGVAHWDPPP----AAMRQIEQGRRGGGRLTDSANHRYGPALGLPALREVLCEKLVHENGLDMTGQEVMVTAGGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGTLAECGWDPDT-LLPDMATLKREIEKG------VKMVVITTPGNPTGAVCPQETMEEIASLCKKHGAWLVVDEAYEHFLHDG 1004
            S+RV + +PA IE V SR A + P   NLA G AHW PP     AA  ++  G        D+  +RYG ALGL  LR+ L  KL  ENG++  G+EVMVTAG NQAF  V   LLD GDRV+L  P+Y +H+ A+QLA   +  C  D DT   PD   L   ++K       VKM+ IT PGNP+GAV P+ET+  +  +C++ G WLV DE YE+FL+DG
Sbjct:   24 SRRVSEADPAVIEEV-SR-ALLKPGVMNLAAGYAHWSPPAKCVQAAADRMSLGNFSYAYTFDTEVNRYGDALGLKELRDALKAKLKRENGIE--GREVMVTAGANQAFVNVVDTLLDEGDRVVLFAPYYFSHKIALQLARADIRIC--DTDTHFQPDFRDLHSILDKSKHEGKPVKMMAITNPGNPSGAVWPRETVMLLQEVCRQWGIWLVSDETYEYFLYDG 240
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BLAST of mRNA_S-dermatodea_contig8565.16727.1 vs. uniprot
Match: A0A7R9YX99_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YX99_9CHLO)

HSP 1 Score: 159 bits (401), Expect = 3.670e-43
Identity = 97/232 (41.81%), Postives = 136/232 (58.62%), Query Frame = 3 
Query:  348 DGL--RPRLSKRVRDTEPAHIEAVLSRYADMDPSPANLAQGVAHWDPPPAAMRQIEQGRRGGGRLTDSANHRYGPALGLPALREVLCEKLVHENGLDMTGQEVMVTAGGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGT----LAECGWDPDTLLPDMATLKRE--IEKG-----VKMVVITTPGNPTGAVCPQETMEEIASLCKKHGAWLVVDEAYEHFLHDG 1004
            DG+  RP++S R+  T+ A I     +     P   +LAQG+ HW PPPAA+    +  + GG    S    YGPA GLPALR+ L EK+  +NGL     +VMVTAG NQAF    LAL+D GD V+L +P+Y  H  AVQ++GG+      EC  D  +L PD+A L++   ++ G     V++VV+T P NPTG +  +  ++  A LC   GAWL++D  YE F++DG
Sbjct:    6 DGVATRPQVSNRISATD-APIIVRTKQVLASAPGAISLAQGIVHWLPPPAALTAATELLQAGGAGLSS----YGPAEGLPALRQALREKIAAKNGL--RNHDVMVTAGANQAFVNAVLALVDEGDAVVLFKPYYFNHLMAVQMSGGSRSVEFGEC--DASSLHPDLAWLEQRLAVQPGTGSPKVRLVVLTNPCNPTGVLMSEAEVQLAADLCAAAGAWLLLDNTYEDFVYDG 228
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BLAST of mRNA_S-dermatodea_contig8565.16727.1 vs. uniprot
Match: A0A0G4G1D2_VITBC (Aminotran_1_2 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G1D2_VITBC)

HSP 1 Score: 160 bits (406), Expect = 2.840e-42
Identity = 90/204 (44.12%), Postives = 117/204 (57.35%), Query Frame = 3 
Query:  402 IEAVLSRYADMDPSPANLAQGVAHWDPPPAAMRQIEQGRRGGGRLTDSAN--HRYGPALGLPALREVLCEKLVHENGLDMTGQEVMVTAGGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGTLAECGWDP-DTLLPDMATLKREIEKG---VKMVVITTPGNPTGAVCPQETMEEIASLCKKHGAWLVVDEAYEHFL 995
            ++ +L  +AD D    +L+QGV HW PP  A+           +LT SA+  HRYGP  G   LR  L EK+  ENGL     +V +T G NQAF  + LAL DPGD V+L RPFY  H  A Q+    L  C  D  D L PDMA L+R +E     V+ V +  PGNPTG +  +  +EE++SLC++ G WL+VD  YEHFL
Sbjct:    1 MQKMLREFADRDV--LSLSQGVVHWTPPQTAIENAIS------QLTKSASEVHRYGPDEGSAELRSKLVEKIARENGLTAADNDVFITVGANQAFVNLCLALFDPGDGVVLFRPFYFNHYMACQMTN--LVPCLCDTTDELRPDMAALRRLLESSSSNVRAVSVVNPGNPTGILLTRAELEELSSLCRERGIWLIVDNTYEHFL 194
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BLAST of mRNA_S-dermatodea_contig8565.16727.1 vs. uniprot
Match: A0A8J9WR04_9CHLO (Aspartate aminotransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR04_9CHLO)

HSP 1 Score: 159 bits (402), Expect = 2.290e-41
Identity = 95/221 (42.99%), Postives = 129/221 (58.37%), Query Frame = 3 
Query:  360 PRLSKRVRDTEPAHIEAVLSRYADMDPSPANLAQGVAHWDPPPAAMRQIEQGRRGGGRLTDSANHRYGPALGLPALREVLCEKLVHENGLDMTGQEVMVTAGGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGT--LAECGWDPDTLLPDMATLKREIEKG--VKMVVITTPGNPTGAVCPQETMEEIASLCKKHGAWLVVDEAYEHFLHDGER 1010
            P++S+RV+ T+ A I     +Y        +LAQGV HW PP  A+       R   R   SA   YGP  GLP+L E L EKL  EN L     EVMVT+G NQAF  + L LLDPGDR++L  P+Y  H  AVQ+ GG   + +   DP +  P++  L++E+ +    KMVV+  P NPTG +  +E +E  A LC+K GAWL++D  YEHF++DG +
Sbjct:   44 PQVSERVKVTD-APIIVKTKQYIGGRKDVLSLAQGVVHWTPPQNALDLASDLVR---RKDVSA---YGPCAGLPSLTEALKEKLATENNLP--DHEVMVTSGANQAFTNIVLTLLDPGDRIILFVPYYFNHLMAVQMTGGADNVVQGRCDPQSWHPNLDWLEQELSQPNPPKMVVLVNPCNPTGVLLSKEEVERAAQLCQKAGAWLIMDNTYEHFVYDGRQ 255
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BLAST of mRNA_S-dermatodea_contig8565.16727.1 vs. uniprot
Match: A0A7S3BKE8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BKE8_9EUKA)

HSP 1 Score: 156 bits (395), Expect = 1.450e-40
Identity = 92/225 (40.89%), Postives = 126/225 (56.00%), Query Frame = 3 
Query:  366 LSKRVRDTEPAHI---EAVLSRYADMDPSPANLAQGVAHWDPPPAAMRQIEQGRRGGGRLTDSANHRYGPALGLPALREVLCEKLVHENGLDMTGQEVMVTAGGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGTLAECGWDPDT--LLPDMATLKREIEKG-------VKMVVITTPGNPTGAVCPQETMEEIASLCKKHGAWLVVDEAYEHFLHDG 1004
            LS+R++ T+   I   + +L    D+     +LAQG+ HW PP  A+   +        + D     YG   GLP LR  L +K+  ENGL     E+MVTAG NQA+  + LALLD GD  LL +P+Y  H  A+Q+ G    E    P T  L PDMA L+ E E         ++MV +  PGNPTG + P ET+EE ++LCK++GAWLV+D  YEHF ++G
Sbjct:   38 LSQRIQQTDTPCIVKMQQMLRGKTDV----FSLAQGIVHWPPPSEALVAAQAA------VVDVGTSLYGADDGLPELRTALKQKVATENGLH--NSEIMVTAGANQAYTNLVLALLDAGDAALLFKPYYFNHLMALQMTGSA-TELVLPPSTPDLQPDMAALRAEFEMRASSDRAQIRMVTLVNPGNPTGVMIPPETLEEASALCKRYGAWLVMDNTYEHFSYEG 249
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BLAST of mRNA_S-dermatodea_contig8565.16727.1 vs. uniprot
Match: A0A2V0PCT8_9CHLO (Aspartate aminotransferase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PCT8_9CHLO)

HSP 1 Score: 157 bits (396), Expect = 2.000e-40
Identity = 98/221 (44.34%), Postives = 127/221 (57.47%), Query Frame = 3 
Query:  366 LSKRVRDTEPAHIEAVLSRYADMDPSPANLAQGVAHWDPPPAAMRQIEQGRRGGGRLTDS--ANHRYGPALGLPALREVLCEKLVHENGLDMTGQEVMVTAGGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGT--LAECGWDPDTLLPDMATLKREIE--KGVKMVVITTPGNPTGAVCPQETMEEIASLCKKHGAWLVVDEAYEHFLHDGER 1010
            +S+RV DT+   I    +  A  +    +LAQG+  W PPPAA+ +  +       L  S  + H YGPA GLP LR  L EKL  ENGL+  G +VMVTAG NQAF  + LAL D GDR +L RP+Y  H  A Q+ GG   LA     P TL PD+  L+RE+E     KMVV+  P NPTG    +  +E  A+L ++ GAWLV+D  YE F+ +G R
Sbjct:   41 VSRRVLDTDAPVIVKTKAMMAGRE-GVLSLAQGIVFWPPPPAALARASE------LLASSPPSLHGYGPAEGLPELRAALREKLRAENGLE--GYDVMVTAGANQAFVNLVLALCDAGDRAVLFRPWYFNHAMAFQMTGGADRLAFGPCCPATLKPDLDWLQRELEGRDPPKMVVLVNPCNPTGVALSKGDVERAAALTQRAGAWLVLDNTYEQFMFEGRR 252
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8565.16727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2X8_ECTSI5.490e-10578.76Nicotianamide aminotransferase A n=1 Tax=Ectocarpu... [more]
A0A835YRY9_9STRA6.590e-7354.63Nicotianamide aminotransferase A n=1 Tax=Tribonema... [more]
A0A4D9CSE6_9STRA9.870e-5153.70Aminotran_1_2 domain-containing protein n=1 Tax=Na... [more]
W7TTY9_9STRA1.350e-5053.70Transaminase transferring nitrogenous groups n=1 T... [more]
A0A7S0XXZ5_HEMAN2.710e-4446.64Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7R9YX99_9CHLO3.670e-4341.81Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A0G4G1D2_VITBC2.840e-4244.12Aminotran_1_2 domain-containing protein n=1 Tax=Vi... [more]
A0A8J9WR04_9CHLO2.290e-4142.99Aspartate aminotransferase n=1 Tax=Coccomyxa sp. O... [more]
A0A7S3BKE8_9EUKA1.450e-4040.89Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A2V0PCT8_9CHLO2.000e-4044.34Aspartate aminotransferase n=1 Tax=Raphidocelis su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8565contigS-dermatodea_contig8565:1882..8946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score157.9
Seed ortholog evalue6.6e-36
Seed eggNOG ortholog4641.GSMUA_Achr7P09910_001
GOsGO:0000096,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006521,GO:0006555,GO:0006558,GO:0006568,GO:0006569,GO:0006570,GO:0006576,GO:0006586,GO:0006725,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009641,GO:0009698,GO:0009850,GO:0009851,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010252,GO:0010326,GO:0010364,GO:0010366,GO:0010565,GO:0010600,GO:0010817,GO:0016054,GO:0016740,GO:0016769,GO:0017144,GO:0019222,GO:0019439,GO:0019748,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031335,GO:0031336,GO:0032350,GO:0032351,GO:0032353,GO:0033238,GO:0033239,GO:0034641,GO:0042402,GO:0042430,GO:0042436,GO:0042445,GO:0042446,GO:0042592,GO:0042762,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0045763,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046885,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051175,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090354,GO:0090356,GO:0090357,GO:1900908,GO:1900909,GO:1900911,GO:1900912,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901996,GO:1901997,GO:1902221
EggNOG free text desc.Aminotransferase class I and II
EggNOG OGs37RZD@33090,3G80E@35493,3KUCY@4447,COG0436@1,KOG0257@2759
Ec32 ortholog descriptionnicotianamide aminotransferase A
Ec32 orthologEc-09_004540.1
COG Functional cat.E
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons4
Model size1013
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8565.16727.1prot_S-dermatodea_contig8565.16727.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8565 2082..8946 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925351.8950987-UTR-S-dermatodea_contig8565:1881..20811622925351.8950987-UTR-S-dermatodea_contig8565:1881..2081Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8565 1882..2081 +
1694079875.094745-UTR-S-dermatodea_contig8565:1881..20811694079875.094745-UTR-S-dermatodea_contig8565:1881..2081Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8565 1882..2081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925351.9064424-CDS-S-dermatodea_contig8565:2081..25281622925351.9064424-CDS-S-dermatodea_contig8565:2081..2528Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8565 2082..2528 +
1694079875.1158533-CDS-S-dermatodea_contig8565:2081..25281694079875.1158533-CDS-S-dermatodea_contig8565:2081..2528Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8565 2082..2528 +
1622925351.918945-CDS-S-dermatodea_contig8565:2866..29471622925351.918945-CDS-S-dermatodea_contig8565:2866..2947Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8565 2867..2947 +
1694079875.132705-CDS-S-dermatodea_contig8565:2866..29471694079875.132705-CDS-S-dermatodea_contig8565:2866..2947Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8565 2867..2947 +
1622925351.9339175-CDS-S-dermatodea_contig8565:3433..35901622925351.9339175-CDS-S-dermatodea_contig8565:3433..3590Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8565 3434..3590 +
1694079875.1444335-CDS-S-dermatodea_contig8565:3433..35901694079875.1444335-CDS-S-dermatodea_contig8565:3433..3590Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8565 3434..3590 +
1622925351.9479964-CDS-S-dermatodea_contig8565:8818..89461622925351.9479964-CDS-S-dermatodea_contig8565:8818..8946Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8565 8819..8946 +
1694079875.1539145-CDS-S-dermatodea_contig8565:8818..89461694079875.1539145-CDS-S-dermatodea_contig8565:8818..8946Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8565 8819..8946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8565.16727.1

>prot_S-dermatodea_contig8565.16727.1 ID=prot_S-dermatodea_contig8565.16727.1|Name=mRNA_S-dermatodea_contig8565.16727.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=271bp
MQQIAAAIALLLVLMSTPLVCLASARVDSPTRPRTGSKASPPASTRQHED
GLRPRLSKRVRDTEPAHIEAVLSRYADMDPSPANLAQGVAHWDPPPAAMR
QIEQGRRGGGRLTDSANHRYGPALGLPALREVLCEKLVHENGLDMTGQEV
MVTAGGNQAFAMVALALLDPGDRVLLARPFYCAHQCAVQLAGGTLAECGW
DPDTLLPDMATLKREIEKGVKMVVITTPGNPTGAVCPQETMEEIASLCKK
HGAWLVVDEAYEHFLHDGER*
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mRNA from alignment at S-dermatodea_contig8565:1882..8946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8565.16727.1 ID=mRNA_S-dermatodea_contig8565.16727.1|Name=mRNA_S-dermatodea_contig8565.16727.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7065bp|location=Sequence derived from alignment at S-dermatodea_contig8565:1882..8946+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TAGACTTGCCCGAGAGGCAATCGGCAAATCAGCAATCCAACAAGGGCAGG
TAGGTTTGGGCCTGGAGAAGGCAGGCGTGGGACAGGTAGATCGTGTGAGT
GACTTCGAAGACGTTTCTCCTGCTACACTTCCACCAGCCCTGGCCCCCCC
GCCTTCTCGCAGTGAACGAGTAAGAGCGCTTCGCGAGGACGACGTTCTAC
ATGCAACAAATCGCGGCTGCCATAGCTCTGCTGCTGGTGCTCATGTCGAC
GCCGCTCGTATGTCTCGCTTCGGCGCGCGTAGACTCCCCGACACGCCCAC
GAACGGGGTCCAAGGCATCGCCACCAGCATCCACGAGGCAACACGAAGAC
GGCCTGAGACCGCGACTGTCGAAGAGAGTAAGAGACACAGAGCCGGCGCA
TATAGAAGCGGTGCTATCGAGATATGCTGACATGGACCCGTCGCCCGCCA
ACCTGGCTCAGGGTGTGGCGCACTGGGACCCACCTCCTGCCGCCATGCGG
CAGATAGAGCAGGGAAGGCGAGGGGGTGGGAGGCTGACGGACTCGGCAAA
TCATAGATACGGACCTGCGCTTGGCCTCCCTGCACTTCGGGAGGTGTTGT
GTGAGAAGCTGGTGCACGAAAACGGTCTAGACATGACTGGCCAGGAGGTG
CGGACGTTGATCCAACAGACAGTCGTGATTGTGTACTGCTGTATGTAGCG
CGACATGGCGCCGTCAGAGGAGATCTACACCAATGTTTGAACCTTCGAAC
GCGTGCAAATATGTAGGTGCGCGCGGTCTGTGGGAGACCTGCTGGTTGAG
CAGGGACAGCGTGTGTCGCTTTTTCCTCTTTCTCAGGGCGTCGCGATTGA
CCCTTCGACGCGGATGAGCCCGTGCGAGTGGTTGTTCCAATCTAACGATT
TCACCGATTTCGAATATGTCATGCGTCACTCGGTCCCCGCACTGTACTCC
CCACCCCCGCCCCCACCCGTTTTTGCGCCCTTCAGGTTATGGTTACCGCC
GGTGGGAATCAGGCGTTCGCCATGGTGGCTCTTGCGTTGCTAGACCCGGG
AGATAGGGTGCTCTTGGTGAGGCTGCCGCGCACCACCAGCGCAAAAAGCT
GCTGCTTGTTCATCGAACCAGCTAATGACACCAGCAGAAATATGAAATAC
TACTATTATACCGCCGTTGTATCATGGTCCATTGCGGAGGACCATAGTTA
ACAAGACCACTCCGTCTGAAGGGAGAACTTAAAAACGAGTTACCGAATCA
GGCCGAAAAATAGTCTACATGTAGTCGGGTAGAGCTGGTTTCATGCTAAT
CACGTTAGGATATAGGGACAGTTAGGTGTTCATGGTCGACATATTTGCGA
CTTCATGGTCGGGTTGTAAGTTGTTAGTAGTGTGGTGACCAAATAATCAA
ATCGATCTCTCCAAGGTTATTCTTAGCGGTATGGCAGGAAACGCAAGGGC
AAAGCGTGCGGTGCCCGCTGTGATTATTGTCCGATCTTCTTCCCAGTTAA
GGAAGCCCCCCCACACCATCTCCGGCCTCTTTTTGTCGAAAACCGGGCGT
AGGCTCGCCCATTTTACTGCGCGCACCAGTGTGCCGTGCAGCTCGCAGGA
GGCACGCTCGCCGAGTGCGGGTGGGATCCGGATACCCTGTTGCCCGACAT
GGCGACTCTAAAGCGGGAGATAGAGAAAGGTGTCAAGATGGTCGTCATCA
CCACCCCAGGTGGGCTATATGCCTCGACACCCACCATTCCCCCGAGCGTG
TACGGATCGTGTGTTGCGCGGAGCAGTACGTGACGGCAAGCACTGCTGAA
CAATACTGCACTTGTATTACCCATCAATTGTGCACAATTCGGATTTTCTC
CGACGAAAAAAAGTGGATAATGCCTAGTAAACACGAGAGAGGAGAAATCA
AATAAAATGGGCAAAAATGGGGCCCATGGGGATTTGTTTCTGGCCTAAAT
GCTGCGCCCGCTCCCTTCGTTCCAAACACCGTTTAGCAATCTCTCTCGGC
ATCATTGTACGGATCTCTCCAGACCAAAACCTTCTGTTCCGAAATGATGA
TCGCTTTACCGGGGGGCGGGGGCTCAATGTTTTTTTTACCATTGAATTGT
TTACGGGGGAGGGGGGGGCTTTTTCATCTGTTCGCAGACGAATGCTCCGC
ACGATGAGATACGCGTACACGCGAAGCTCGACGCGAAGCAGCTCGTGCAG
GAGTGATTGTCACGCATCCGTTCGGTGTGATACCCGTGGCGCAGGATAAA
ATGGCAGTGCTGCTGTGCAATGATGTCGGATCGTGGGCGAAATCCGAACT
GTGTAAAGATAGCGGTACTGCTTCGAGTAATCGGTAGACAGGGGCTCGTC
GCTTCAGTATTTTTCCCACGGGCTTCATGCACCCCGTGAAGGGTCTTGAA
GAGTCCGTCGTCGCGTGCGATTTGACACCTGCGGTCCCTCGATCGTTGGG
CTGGTTCTCTCTCGCACATATTTCTTGAATCGAGCGTCTTGCGCCGCTGT
TTTTACAGCGGTGTGCTATGTCGTGTATGTAGCTGCGGCAAGTGGGACCA
CTGTTTCATCCCATACTACCTGAATTGAGAGATTTAATCGAGGATATTCC
AACCGTGTTCTTTGGGGGGCGGTCCGAAAGAACAAAGAACGATCTCAGAT
TTCCCGAACCCGTACCCAAAGAAGCTCCATGTCCAAGGCATGTGAAAGCG
AGGTTATTTTCTAGCAGCTCAATGCTAACCAGGGAGCATGAAAGAGTACG
ATCCCCATGGAACAACCAGCATTTGGTGGAGTTCCATTTATATGGTGAGG
GGTGTTTGTGGCGAGGCGTTGACTTCGCTGATGTCCCCGGCATCGTTACT
GTCTGTTACGACCAATGATACATTCTGCTTCACCGCGAGTGCTGCCAGTC
TCGCGTCAGACCATGGATTTGCTTGAGTTGGCCGCATTCTCACGGGATAG
ATGGGCGTGAATCCAGCCGTTGGTGCCTTCCGAGCGACGCCAAGGGCGAA
AAGCTGTTACGGAGGCACAGAGTAATCAGGTCCAAAATGTGCCACAAGTC
TCTACCTATAAAAATCAAAACAGGCAGGAATTATCGAGATTTCAAGGTCG
ATGTTCTTGTAAATGGCCATATCTCGTGTTTTTTGTTTTTCATGAGATTT
GTGTTGTTTCTTGGACATTCATGTTCGGAATAGTTGGGTATTCATGGTCA
TGATATTTGGTCCTGATTACTTGATTATAGTGTACCTCCGTAATACTATA
ATACTACGGAGGAGCATCGTAGCGAACTGTGGTGCTACTCACAACCCACC
AATGGCGATTTGCGTATTTTTTTAAACTATAAATCCCGCAGAAGATTATT
GGGCCATTGATATATTAAATATTTACCTACATTTTCTAGAACAGGCAAAT
CTTGGCCAGACCAGAAAAATTGTAGAGGCTAAAAGGCCAGAGACTTGATT
TTTCAGAAGTTGGTATGTTAGAGCTCTAACGAGGAAGAACATATGAACGA
ACCAACGAACAGCAGCAGCCTGCTGTCCGAGCAGCGGTTGCTCCCCCGGC
TAGCCTGGGCGCTCACGCCTCAGTGTGGCTCCAACGCAGACTGGCTAATA
TGGCTACACCCTCTCGGGGGGCAATGCAATTGTAATATTCTCTGGAAGGG
TTCTCGGAACGTTCCCCGATGAACTTATCTGGGGGTGCAAATGACCGATA
CTCTCTCTCACACAAAATACAGATTTCAATGTTGGAATCCTTCACTTTTT
CTAGATCACGCAATTCTTGGCCAGACCAGAATGATGGTAGAGGCTAAAAG
GCCAGAGCCTCGATTTTTCAGAAGTTGGTATGTTAGATCTCTATTGAGGA
AGACTTTTTCGCATACTAGGCTAGTCCAACTGCTGTGTTCGTCCGTAATG
GTAATGTAGGAAGAGCAACTTTTCGGGGCTTCAATAGTCCTCACGAATCC
ACCGTCAAGGATCGTTTGACTTGCCTCCCCGATGCTGCTGGTTGTTATCG
GCCTGGAAATATCAAGCCAGGCAAACCGCCTACGTGGCCGGACTCTTTGC
TGTGGCTTAAGTATTACGAAGGTAAACAGTACTATTACTGTAGCATAATA
GTAATCAGGACAACAGTATACCCAACATATTATCATTATTAATATTATTA
TTATTATTATTATTAAAGTGTTTGCGATAGGTAAATTGTACCTATCAAAT
TTTGCTAGTAGTCCCCCGAAGGTGAAATTTTGGAAAATTTACCAGGCGGA
TTTCACCAAATATGGCCGACTTAGTAAACTTTGCCAAGCATATTTGATAT
GAAATTTGAAGCACGCCAGGATTGGTCAACCTACCCCGAGCGTTTGCCCG
ACGCCTTTGGTGGCCGTTTGCCACACGCCANNNNNNNNNNGCACCCACCG
GCACCCCACGGTGGGCTGACCGCAGCCGCCCGCCGCGCGCCCCTCGGCCC
CGGCTCAACCTCCAATCTCAGGCACGACACAGCAGAGCTGCTGCTGCAGC
AGCAGTGTGGTGTGTGTTGCTCGATCGTGTATGTGTTGGTTGTTTTCGCT
CGAGCGCCGCGGCCGTGGGCACTACTGTACACCGTACTGCTTGGATCACC
ACACGAACAACGCGACCCAGTAGGTCTGAGGTCGCGGGTCGGCTGTCTGT
CCAGCTGTTCTGTTGCTTCGCCGCGTATCACTCTGTAGCTGCTAGCACCT
CACAGAGAGGGCGCGCGCAGGGCTGTGTGTGCCTCAGAAAAGTCACCTGT
GCTGTCTGCTGTATTATATATTACATATGATACAACTGCAGTACATGCGA
AGTAGTACATACTGCTGTTATCATACCTGTAATCATTTCAAACTGTCTGT
GTTCTTCTACAGAGCAGAAGCAGCTGCTGCTGCTGCCGCCGACAGGCACA
GCTCTGCTTAGCCACGCAGCTTGCTACGATTTTTTTTATCGGCCGACGCA
AGCGTGCGAAGAAGCAGGCGTGTGAGGGGAGAGGCAGGAGCAATCGCAGT
GGCCATGGGCGTATCTCCGCTCTCCACAAGCTACAGACAGACAGTAGCTG
TATCATAGGTCGTAGGAAAGCATGAGTCGCCCTCTCGGAGCAAAACAAAA
AGAGAACCAAGGGGCCGTTATTCTGGAAGAGCCACAATTTTAGAATTTTA
CCTTTCGCATTCCATTTGCAAATTTCACTATTAATAGGCCATATTTCACG
TCCATATTTCACCTTGGAATTCACGTAAAATTTACCTAGCAAAATTTACC
TGTCGCAAACAATCTATTATTATTATTATAGTAATTATAACACATACTCC
CGAGGCATGCCCTCTCTGTTTCCAAGAGTTAGTTTATGTCAATTCCTTTG
TATGTACTATATAGGCAATCCCGTTGGGTTTTTCTCGATCTCCCGATTTT
CTCATCTGACCACGAGCGGGATCGGCAACCATTGGTGGGCCGGTCGGTTG
TATGTGTGATAAGACCGACCGGCCCACCAATGGTTGCCGATCCCGCTCGT
TGTCAGATGAGAAAAATCGAGAGATCGACAAAAAAAAAACTACAGAACTA
ACGTACCATAAAAAAAAAAATGTGTCTGTCCTTGCAACATCTATCTGCCA
TATTCCGGCCTGATAATGCCAAACAATCAAAAAGCATTTTTTTGAGTTAA
CGAGGTTGTTCGGGCCAACGTTTACACACACACGCGACTTGAAGACGTTT
TGTATTGAGGAGAATTTAGTCCTGATTACTGTTTTGACTGATTGATTGAT
TGATTTCATTGATTTGCGCGCGTACAGCCGATCGGCTTAATCCGACCTAT
CCGACTTGTGATTACTGCGCACCTCCGTAATAAATAGTACGACCGACCGC
CCCGAATCCCGTCTGTGACCACGAGGGATAATCCATTATACCAGTATTTA
CCAATACGGGTAATTCCGTATGGTTTTTCGGTTTCTCGCGTGACCACAAG
CGGGATTGGATCGGCAACCATTGGAGGGCCGGTCGATCGTAAGTGTGACA
ATCAATCAACAAATCAAATGAAATCAAATCAATCAATCCCTCCCCGGTTA
TTCCTGCCTTTGATGAAATATGGCGCGCATTGGGTTCATTCGGAGCCTGA
ACCTCCCGGCTCTGTCGCCGATTTTTCGGACTCTGCGGCCAAGCAGCTGT
GCTGTATATATCCAGAGTTTCAGCTGTGCCAGGTGTGCTTGCCAGCACAG
AAAGTGTATACATGTACTTGTATAATGTGGTAGTAAATCGTGCGTATGTA
TCGGTAACGCTCGACGTGGGATCGGAAGAAGCCCGACAACCGGAAGTGCC
CCGAAGCGGTGAGACGACGAACAGGAACCACAAGCCCCGCAAACCGGTTA
TTTTTCACGGAGACTATTTTGAGCTTATTACCGGGAATTGCGCGACGTAT
TTCATTTTTGCACACATACTAATATTAGTATGATAGACCGGCTTTTTCCG
AGGTCCGTCTGTGGTCACGAGGGATAATCCCATACTTCGAGTATCTTTTA
TCCCCGGTTCTTACCTCAGGTTTTTATCGCTAACGCATTGGGTTCGGCAC
TCCCACAGCTCGCCGACGATTTACACTCGGATTATCATTATTCACGCTCT
CTCGCGGAGGTAGAGCAAGTACATACATGCCGACCCTGCCCGGATTCGAA
CCCGGGTCCTCCGCCTTCCTGGCCGTTGGTGTACCAGTTCAACCACGGGG
CGCGCGGTTATGCACTATACGTTATCGTACCGCAGAAATGAGATGTCCTG
CAAGATAAGGTCAAATACTGAAAATAAATCTTGGCGCCGAATCGAAGGCG
CCGGCGAGGTAAACCCCCGAACCTCTGTAGCGATGTCTGCCCTACCTATT
AGTTGTAGCGTGGAAAAAATTTAATACGTGGTAAAACGAGTCGTGCATTG
ACGCATCCTCTGATTGAACAACGCCCTGCAACGTTAGGAAACCCCACCGG
AGCCGTGTGCCCGCAAGAGACTATGGAAGAGATAGCGAGCCTCTGCAAGA
AGCACGGCGCGTGGCTCGTGGTGGACGAAGCCTACGAGCATTTTTTGCAC
GACGGTGAACGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8565:1882..8946+

>mRNA_S-dermatodea_contig8565.16727.1 ID=mRNA_S-dermatodea_contig8565.16727.1|Name=mRNA_S-dermatodea_contig8565.16727.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at S-dermatodea_contig8565:1882..8946+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAACAAATCGCGGCTGCCATAGCTCTGCTGCTGGTGCTCATGTCGAC
GCCGCTCGTATGTCTCGCTTCGGCGCGCGTAGACTCCCCGACACGCCCAC
GAACGGGGTCCAAGGCATCGCCACCAGCATCCACGAGGCAACACGAAGAC
GGCCTGAGACCGCGACTGTCGAAGAGAGTAAGAGACACAGAGCCGGCGCA
TATAGAAGCGGTGCTATCGAGATATGCTGACATGGACCCGTCGCCCGCCA
ACCTGGCTCAGGGTGTGGCGCACTGGGACCCACCTCCTGCCGCCATGCGG
CAGATAGAGCAGGGAAGGCGAGGGGGTGGGAGGCTGACGGACTCGGCAAA
TCATAGATACGGACCTGCGCTTGGCCTCCCTGCACTTCGGGAGGTGTTGT
GTGAGAAGCTGGTGCACGAAAACGGTCTAGACATGACTGGCCAGGAGATG
CAACAAATCGCGGCTGCCATAGCTCTGCTGCTGGTGCTCATGTCGACGCC
GCTCGTATGTCTCGCTTCGGCGCGCGTAGACTCCCCGACACGCCCACGAA
CGGGGTCCAAGGCATCGCCACCAGCATCCACGAGGCAACACGAAGACGGC
CTGAGACCGCGACTGTCGAAGAGAGTAAGAGACACAGAGCCGGCGCATAT
AGAAGCGGTGCTATCGAGATATGCTGACATGGACCCGTCGCCCGCCAACC
TGGCTCAGGGTGTGGCGCACTGGGACCCACCTCCTGCCGCCATGCGGCAG
ATAGAGCAGGGAAGGCGAGGGGGTGGGAGGCTGACGGACTCGGCAAATCA
TAGATACGGACCTGCGCTTGGCCTCCCTGCACTTCGGGAGGTGTTGTGTG
AGAAGCTGGTGCACGAAAACGGTCTAGACATGACTGGCCAGGAGGTTATG
GTTACCGCCGGTGGGAATCAGGCGTTCGCCATGGTGGCTCTTGCGTTGCT
AGACCCGGGAGATAGGGTGCTCTTGGTTATGGTTACCGCCGGTGGGAATC
AGGCGTTCGCCATGGTGGCTCTTGCGTTGCTAGACCCGGGAGATAGGGTG
CTCTTGGCTCGCCCATTTTACTGCGCGCACCAGTGTGCCGTGCAGCTCGC
AGGAGGCACGCTCGCCGAGTGCGGGTGGGATCCGGATACCCTGTTGCCCG
ACATGGCGACTCTAAAGCGGGAGATAGAGAAAGGTGTCAAGATGGTCGTC
ATCACCACCCCAGGCTCGCCCATTTTACTGCGCGCACCAGTGTGCCGTGC
AGCTCGCAGGAGGCACGCTCGCCGAGTGCGGGTGGGATCCGGATACCCTG
TTGCCCGACATGGCGACTCTAAAGCGGGAGATAGAGAAAGGTGTCAAGAT
GGTCGTCATCACCACCCCAGGAAACCCCACCGGAGCCGTGTGCCCGCAAG
AGACTATGGAAGAGATAGCGAGCCTCTGCAAGAAGCACGGCGCGTGGCTC
GTGGTGGACGAAGCCTACGAGCATTTTTTGCACGACGGTGAACGGTGAGA
AACCCCACCGGAGCCGTGTGCCCGCAAGAGACTATGGAAGAGATAGCGAG
CCTCTGCAAGAAGCACGGCGCGTGGCTCGTGGTGGACGAAGCCTACGAGC
ATTTTTTGCACGACGGTGAACGGTGA
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