mRNA_S-dermatodea_contig85636.16725.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85636.16725.1
Unique NamemRNA_S-dermatodea_contig85636.16725.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85636.16725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85636contigS-dermatodea_contig85636:106..637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size533
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925351.8039875-CDS-S-dermatodea_contig85636:105..4651622925351.8039875-CDS-S-dermatodea_contig85636:105..465Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85636 106..465 +
1694079875.0531085-CDS-S-dermatodea_contig85636:105..4651694079875.0531085-CDS-S-dermatodea_contig85636:105..465Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85636 106..465 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925351.817054-UTR-S-dermatodea_contig85636:465..6371622925351.817054-UTR-S-dermatodea_contig85636:465..637Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85636 466..637 +
1694079875.0623896-UTR-S-dermatodea_contig85636:465..6371694079875.0623896-UTR-S-dermatodea_contig85636:465..637Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85636 466..637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85636.16725.1prot_S-dermatodea_contig85636.16725.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85636 106..465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85636.16725.1

>prot_S-dermatodea_contig85636.16725.1 ID=prot_S-dermatodea_contig85636.16725.1|Name=mRNA_S-dermatodea_contig85636.16725.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
EGWSRAVVGKPPQAWGRRVLILYPLGRPLSERFGVELGWESGSWETEGTI
RVIAPLVSLADGANRAGGEGLTAKGDRGKTMSVGCGEMGFWAHEECMREC
KGGEMHRLWRRQNSTHSSL*
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mRNA from alignment at S-dermatodea_contig85636:106..637+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85636.16725.1 ID=mRNA_S-dermatodea_contig85636.16725.1|Name=mRNA_S-dermatodea_contig85636.16725.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=532bp|location=Sequence derived from alignment at S-dermatodea_contig85636:106..637+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGGATGGAGTCGCGCGGTGGTTGGCAAGCCGCCGCAGGCCTGGGGCAG
GCGGGTACTGATACTGTATCCCCTGGGCCGACCACTGTCGGAGAGATTCG
GGGTGGAACTAGGATGGGAATCGGGGTCTTGGGAGACCGAGGGTACGATA
CGCGTGATCGCACCCTTGGTGAGCTTGGCAGATGGAGCAAACCGGGCCGG
CGGAGAAGGACTCACGGCAAAGGGAGATCGAGGGAAGACAATGAGCGTGG
GCTGTGGGGAGATGGGGTTTTGGGCACATGAGGAATGCATGCGCGAGTGC
AAAGGCGGCGAGATGCATAGGCTATGGAGGCGGCAAAATTCGACACACAG
CAGCCTATGAGCTCCACGCTGTCGCCGAGGAGGGGATCGGACTTTTCGAA
GACCCTCGCGACGCGTACGAGCCCCCCGGAGCTGTCGAAGCCAAAGGGGA
GGAGGACGGGGTTGAGATATTCACTTTCTAGAACACCGGTATGAACGGGG
TGAGGGTTGAGGGAGGGATAGTTGATCGCTTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig85636:106..637+

>mRNA_S-dermatodea_contig85636.16725.1 ID=mRNA_S-dermatodea_contig85636.16725.1|Name=mRNA_S-dermatodea_contig85636.16725.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig85636:106..637+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGGATGGAGTCGCGCGGTGGTTGGCAAGCCGCCGCAGGCCTGGGGCAG
GCGGGTACTGATACTGTATCCCCTGGGCCGACCACTGTCGGAGAGATTCG
GGGTGGAACTAGGATGGGAATCGGGGTCTTGGGAGACCGAGGGTACGATA
CGCGTGATCGCACCCTTGGTGAGCTTGGCAGATGGAGCAAACCGGGCCGG
CGGAGAAGGACTCACGGCAAAGGGAGATCGAGGGAAGACAATGAGCGTGG
GCTGTGGGGAGATGGGGTTTTGGGCACATGAGGAATGCATGCGCGAGTGC
AAAGGCGGCGAGATGCATAGGCTATGGAGGCGGCAAAATTCGACACACAG
CAGCCTATGAGAGGGATGGAGTCGCGCGGTGGTTGGCAAGCCGCCGCAGG
CCTGGGGCAGGCGGGTACTGATACTGTATCCCCTGGGCCGACCACTGTCG
GAGAGATTCGGGGTGGAACTAGGATGGGAATCGGGGTCTTGGGAGACCGA
GGGTACGATACGCGTGATCGCACCCTTGGTGAGCTTGGCAGATGGAGCAA
ACCGGGCCGGCGGAGAAGGACTCACGGCAAAGGGAGATCGAGGGAAGACA
ATGAGCGTGGGCTGTGGGGAGATGGGGTTTTGGGCACATGAGGAATGCAT
GCGCGAGTGCAAAGGCGGCGAGATGCATAGGCTATGGAGGCGGCAAAATT
CGACACACAGCAGCCTATGA
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