mRNA_S-dermatodea_contig85577.16722.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85577.16722.1
Unique NamemRNA_S-dermatodea_contig85577.16722.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig85577.16722.1 vs. uniprot
Match: A0A6H5JPH1_9PHAE (LNS2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 5.470e-15
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 QVFKMTALRGLKLVFPADVNPLYAGFGNSVSDMVAYKK 114
            +VFKMTALRGLKL+FPADVNPLY GFGNSVSDMVAYKK
Sbjct: 1524 EVFKMTALRGLKLIFPADVNPLYGGFGNSVSDMVAYKK 1561
[Close]
BLAST of mRNA_S-dermatodea_contig85577.16722.1 vs. uniprot
Match: D7G275_ECTSI (Phosphatidate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G275_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.470e-15
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 QVFKMTALRGLKLVFPADVNPLYAGFGNSVSDMVAYKK 114
            +VFKMTALRGLKL+FPADVNPLY GFGNSVSDMVAYKK
Sbjct: 1264 EVFKMTALRGLKLIFPADVNPLYGGFGNSVSDMVAYKK 1301
[Close]
BLAST of mRNA_S-dermatodea_contig85577.16722.1 vs. uniprot
Match: A0A7S3GJ51_9EUKA (Hypothetical protein n=3 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GJ51_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 6.840e-6
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 QVFKMTALRGLKLVFPADVNPLYAGFGNSVSDMVAY 108
            Q FK+  LR +K VFP D NP YAGFGN ++D++AY
Sbjct:  576 QDFKIACLRNVKHVFPVDHNPFYAGFGNRMTDVIAY 611
[Close]
BLAST of mRNA_S-dermatodea_contig85577.16722.1 vs. uniprot
Match: A0A0L0D432_THETB (Phosphatidate phosphatase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D432_THETB)

HSP 1 Score: 50.1 bits (118), Expect = 9.370e-6
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    7 FKMTALRGLKLVFPADVNPLYAGFGNSVSDMVAY 108
            FK+  LR L+ VFPA VNP +AGFGN ++D +AY
Sbjct:  741 FKIACLRSLRSVFPAQVNPFHAGFGNRITDAIAY 774
[Close]
BLAST of mRNA_S-dermatodea_contig85577.16722.1 vs. uniprot
Match: A0A7S0G2Q6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G2Q6_9RHOD)

HSP 1 Score: 49.3 bits (116), Expect = 1.040e-5
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    7 FKMTALRGLKLVFPADVNPLYAGFGNSVSDMVAY 108
            FK+ ALR ++L+FP D NP YAGFGN  +D+++Y
Sbjct:   72 FKIAALREIRLLFPPDFNPFYAGFGNRSTDIISY 105
[Close]
BLAST of mRNA_S-dermatodea_contig85577.16722.1 vs. uniprot
Match: A0A0V0XYS1_TRIPS (Phosphatidate phosphatase n=6 Tax=Trichinella TaxID=6333 RepID=A0A0V0XYS1_TRIPS)

HSP 1 Score: 48.5 bits (114), Expect = 3.290e-5
Identity = 19/39 (48.72%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 QVFKMTALRGLKLVFPADVNPLYAGFGNSVSDMVAYKKA 117
            +VFK + L  ++ +FPA  +P YAGFGN ++D++AYK A
Sbjct:  843 EVFKTSCLMEIRALFPASADPFYAGFGNKLNDIIAYKAA 881
[Close]
BLAST of mRNA_S-dermatodea_contig85577.16722.1 vs. uniprot
Match: A0A7S3ENL8_9RHOD (Phosphatidate phosphatase n=12 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ENL8_9RHOD)

HSP 1 Score: 47.8 bits (112), Expect = 6.160e-5
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    7 FKMTALRGLKLVFPADVNPLYAGFGNSVSDMVAY 108
            FK+  LR ++L+FP D NP YAGFGN  +D+++Y
Sbjct:  684 FKIAVLREIRLLFPPDFNPFYAGFGNRSTDIISY 717
[Close]
BLAST of mRNA_S-dermatodea_contig85577.16722.1 vs. uniprot
Match: A0A564XV92_HYMDI (Phosphatidate phosphatase n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A564XV92_HYMDI)

HSP 1 Score: 47.4 bits (111), Expect = 8.420e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 QVFKMTALRGLKLVFPADVNPLYAGFGNSVSDMVAY 108
            +VFK++ L+ L+ VFPAD NP YA FGN  +D+ AY
Sbjct:  554 EVFKISCLKELRDVFPADSNPFYAAFGNRPNDVTAY 589
[Close]
BLAST of mRNA_S-dermatodea_contig85577.16722.1 vs. uniprot
Match: A0A1Y3EEW7_9BILA (Putative LNS2 protein n=2 Tax=Trichinella TaxID=6333 RepID=A0A1Y3EEW7_9BILA)

HSP 1 Score: 47.4 bits (111), Expect = 8.430e-5
Identity = 19/39 (48.72%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 QVFKMTALRGLKLVFPADVNPLYAGFGNSVSDMVAYKKA 117
            +VFK + L  ++ +FPA  +P YAGFGN ++D++AYK A
Sbjct:  702 EVFKTSCLMEIRALFPAFADPFYAGFGNKLNDIIAYKAA 740
[Close]
BLAST of mRNA_S-dermatodea_contig85577.16722.1 vs. uniprot
Match: A0A158QDV2_HYMDI (Acyl-CoA-binding domain-containing protein 6 n=2 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A158QDV2_HYMDI)

HSP 1 Score: 47.4 bits (111), Expect = 8.430e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 QVFKMTALRGLKLVFPADVNPLYAGFGNSVSDMVAY 108
            +VFK++ L+ L+ VFPAD NP YA FGN  +D+ AY
Sbjct:  529 EVFKISCLKELRDVFPADSNPFYAAFGNRPNDVTAY 564
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85577.16722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JPH1_9PHAE5.470e-1592.11LNS2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G275_ECTSI5.470e-1592.11Phosphatidate phosphatase n=1 Tax=Ectocarpus silic... [more]
A0A7S3GJ51_9EUKA6.840e-658.33Hypothetical protein n=3 Tax=Palpitomonas bilix Ta... [more]
A0A0L0D432_THETB9.370e-658.82Phosphatidate phosphatase n=1 Tax=Thecamonas trahe... [more]
A0A7S0G2Q6_9RHOD1.040e-555.88Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A0V0XYS1_TRIPS3.290e-548.72Phosphatidate phosphatase n=6 Tax=Trichinella TaxI... [more]
A0A7S3ENL8_9RHOD6.160e-552.94Phosphatidate phosphatase n=12 Tax=Rhodosorus mari... [more]
A0A564XV92_HYMDI8.420e-555.56Phosphatidate phosphatase n=1 Tax=Hymenolepis dimi... [more]
A0A1Y3EEW7_9BILA8.430e-548.72Putative LNS2 protein n=2 Tax=Trichinella TaxID=63... [more]
A0A158QDV2_HYMDI8.430e-555.56Acyl-CoA-binding domain-containing protein 6 n=2 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85577contigS-dermatodea_contig85577:172..315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog2880.D7G275
KEGG rclassRC00017
KEGG koko:K15728
KEGG ReactionR02239
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
EggNOG free text desc.phosphatidylinositol transporter activity
EggNOG OGsCOG5083@1,KOG2116@2759
Ec32 ortholog descriptionHaloacid dehalogenase-like hydrolase
Ec32 orthologEc-16_002210.1
EC3.1.3.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size132
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925351.5307057-UTR-S-dermatodea_contig85577:171..1831622925351.5307057-UTR-S-dermatodea_contig85577:171..183Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85577 172..183 +
1694079874.8358967-UTR-S-dermatodea_contig85577:171..1831694079874.8358967-UTR-S-dermatodea_contig85577:171..183Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85577 172..183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925351.5402787-CDS-S-dermatodea_contig85577:183..3151622925351.5402787-CDS-S-dermatodea_contig85577:183..315Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85577 184..315 +
1694079874.8498187-CDS-S-dermatodea_contig85577:183..3151694079874.8498187-CDS-S-dermatodea_contig85577:183..315Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85577 184..315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85577.16722.1prot_S-dermatodea_contig85577.16722.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85577 184..315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85577.16722.1

>prot_S-dermatodea_contig85577.16722.1 ID=prot_S-dermatodea_contig85577.16722.1|Name=mRNA_S-dermatodea_contig85577.16722.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
MTALRGLKLVFPADVNPLYAGFGNSVSDMVAYKKARGRKERKR*
back to top

mRNA from alignment at S-dermatodea_contig85577:172..315+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85577.16722.1 ID=mRNA_S-dermatodea_contig85577.16722.1|Name=mRNA_S-dermatodea_contig85577.16722.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at S-dermatodea_contig85577:172..315+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGTTCAAGATGACAGCTTTAAGGGGACTCAAGCTTGTTTTCCCCGC
CGACGTGAACCCTCTCTACGCCGGCTTCGGCAACTCCGTGAGCGACATGG
TGGCCTACAAGAAGGCAAGAGGGAGGAAAGAAAGAAAGAGATAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig85577:172..315+

>mRNA_S-dermatodea_contig85577.16722.1 ID=mRNA_S-dermatodea_contig85577.16722.1|Name=mRNA_S-dermatodea_contig85577.16722.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig85577:172..315+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACAGCTTTAAGGGGACTCAAGCTTGTTTTCCCCGCCGACGTGAACCC
TCTCTACGCCGGCTTCGGCAACTCCGTGAGCGACATGGTGGCCTACAAGA
AGGCAAGAGGGAGGAAAGAAAGAAAGAGATAAATGACAGCTTTAAGGGGA
CTCAAGCTTGTTTTCCCCGCCGACGTGAACCCTCTCTACGCCGGCTTCGG
CAACTCCGTGAGCGACATGGTGGCCTACAAGAAGGCAAGAGGGAGGAAAG
AAAGAAAGAGATAA
back to top