mRNA_S-dermatodea_contig8552.16718.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8552.16718.1
Unique NamemRNA_S-dermatodea_contig8552.16718.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8552.16718.1 vs. uniprot
Match: D8LJC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC6_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 3.110e-47
Identity = 82/138 (59.42%), Postives = 108/138 (78.26%), Query Frame = 1 
Query:  121 MSLPESIVLPQTREAETIRRYALGQADPSYFEKDAAPIFADNMVFNGLLFKVAGGENVRGVFATFVKDIIVEVKFDSIVECGSKDKYLFLYFLRLQGMGENGLYICDYITLDESGLMVRMENCYDTSKCPQEFINAGA 534
            MSLP SIVLP T E ET+RRYALGQ+D S+F + AAPIF+ +MVFNGLLFK+ G  N+  +FA FV + I EV+F++I E GSK KYL LY++RL+G  E+ + + D +TLD+ GL+ R+ENC+DT+KCPQE I+AGA
Sbjct:   92 MSLPASIVLPSTPEGETVRRYALGQSDASFFAEGAAPIFSKDMVFNGLLFKLKGAANIVPLFADFVANKIKEVRFEAIAEAGSKKKYLVLYYVRLEGQ-ESEMPLVDLLTLDDDGLICRLENCFDTTKCPQEIIDAGA 228
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BLAST of mRNA_S-dermatodea_contig8552.16718.1 vs. uniprot
Match: A0A6H5JHF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHF2_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 8.740e-24
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:  247 MVFNGLLFKVAGGENVRGVFATFVKDIIVEVKFDSIVECGSKDKYLFLYFLRLQGMGENGLYICDYITLDESGLMVRMENCYDTSKCPQEFINAGAQATAQAE 555
            MVFNGLLFK+ G  N+  +FA FV + I  V+F++I E GSK KYL LY++RL+G  E+ + + D +T D  GL+ R+ENC+DT+K PQE I+AGA   A  E
Sbjct:    1 MVFNGLLFKLKGAANIVPLFADFVANKIKGVRFEAIAEAGSKTKYLVLYYVRLEGQ-ESEMSLVDLLTQDGEGLICRLENCFDTTKYPQEIIDAGAPTLAGFE 102
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8552.16718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJC6_ECTSI3.110e-4759.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHF2_9PHAE8.740e-2451.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8552contigS-dermatodea_contig8552:1947..6626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size996
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8552.16718.1prot_S-dermatodea_contig8552.16718.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8552 2358..3705 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925351.263122-UTR-S-dermatodea_contig8552:1946..23571622925351.263122-UTR-S-dermatodea_contig8552:1946..2357Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8552 1947..2357 -
1694079874.6501145-UTR-S-dermatodea_contig8552:1946..23571694079874.6501145-UTR-S-dermatodea_contig8552:1946..2357Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8552 1947..2357 -
1622925351.298173-UTR-S-dermatodea_contig8552:3705..37301622925351.298173-UTR-S-dermatodea_contig8552:3705..3730Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8552 3706..3730 -
1694079874.6903005-UTR-S-dermatodea_contig8552:3705..37301694079874.6903005-UTR-S-dermatodea_contig8552:3705..3730Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8552 3706..3730 -
1622925351.309792-UTR-S-dermatodea_contig8552:6531..66261622925351.309792-UTR-S-dermatodea_contig8552:6531..6626Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8552 6532..6626 -
1694079874.702248-UTR-S-dermatodea_contig8552:6531..66261694079874.702248-UTR-S-dermatodea_contig8552:6531..6626Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8552 6532..6626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925351.2774806-CDS-S-dermatodea_contig8552:2357..26061622925351.2774806-CDS-S-dermatodea_contig8552:2357..2606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8552 2358..2606 -
1694079874.6675453-CDS-S-dermatodea_contig8552:2357..26061694079874.6675453-CDS-S-dermatodea_contig8552:2357..2606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8552 2358..2606 -
1622925351.2877529-CDS-S-dermatodea_contig8552:3489..37051622925351.2877529-CDS-S-dermatodea_contig8552:3489..3705Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8552 3490..3705 -
1694079874.6798775-CDS-S-dermatodea_contig8552:3489..37051694079874.6798775-CDS-S-dermatodea_contig8552:3489..3705Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8552 3490..3705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8552.16718.1

>prot_S-dermatodea_contig8552.16718.1 ID=prot_S-dermatodea_contig8552.16718.1|Name=mRNA_S-dermatodea_contig8552.16718.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=155bp
MSLPESIVLPQTREAETIRRYALGQADPSYFEKDAAPIFADNMVFNGLLF
KVAGGENVRGVFATFVKDIIVEVKFDSIVECGSKDKYLFLYFLRLQGMGE
NGLYICDYITLDESGLMVRMENCYDTSKCPQEFINAGAQATAQAEEIFKQ
LNGS*
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mRNA from alignment at S-dermatodea_contig8552:1947..6626-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8552.16718.1 ID=mRNA_S-dermatodea_contig8552.16718.1|Name=mRNA_S-dermatodea_contig8552.16718.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4680bp|location=Sequence derived from alignment at S-dermatodea_contig8552:1947..6626- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTCACACGCGCACCCTTTCCACAATCAAATCACTTCACTTGCAACTGC
GGGCGTTCCGGGGCAGCATTCCACTCGGCCACTCTAAACCAGCAGGCAAG
CTAGCGATTTATTGTCTTCCTCAACAAATATCGATGACACCGCAGTCGGG
GGATTTGTTGAGCGCTAGAACGCAACGGCATCACCCGCACCCGTGCCCAA
ACAAAGATAGGATTGGCCCTTCGATCATTTGAGTACTGTGTATATATGCG
CCAAGCTTCCGAGCTGGTTCCTTCACGCAGCAACTCGGCAAAAATGCGTC
GAATGTATCTCGTGTCTCGCATGACATGTTCCGACATCAGAATAGTGGAT
TTGAAGTCGGAGAGAGTGCGTTTCGATAGTAATCCCATGCAGTGGGCAGT
GCTTTGCTGCACTTTGTACGTTCTACGACACGCTGTTCAAAGCGGGATTC
TTCTGTTGTATATGTACAAGTAAGTAGCTCTACTCTTGCTGTATTGGTGA
TTTCCAGGTTCCTCCAGGTACTCTCGAAACAAATACGACTGCTGTCATTC
GAGAGATTCAGAAATATGCTTAGCTCCGGAAGGTGGACAAGGTAGCGTCC
TACACGCTACAGCAGTTGTATATCGTACATATAATGTGTCTGAAGGGAGG
TGCTCTATGTTTGACGGCTGCTAAATTCACCAGAGCACTTTCATTGCAGC
CAATTCTTTCCGACAAGGCACGATTCACTCACAGCGTTGACGAGCGAAGG
GTATCACCGCAGATCCCCACGAACGATCAAGACGAAAAGACACAAACATG
GGTGGGACTCCATTAATCGTTAGGGTTGTGTATCGGCGCACCGACGTACA
AGTATATCTCGTCAGATGGCCCAGCCGATAGGTCGACATTTTACCGATAT
ATCAGTGCGAGCGCAGCCAACCGTTACGGCGGCGAAGTCGCGTTTTGCGC
GCACCGCCCAATGGCGCCCCTGGCTGGCGATAGGTGCTGCCTGAGGCGAA
CATTTTACACCATTTGGCTTCATTTATCATCAAAATTGTCCACAATATTG
AAATTGGTCCGTGGGCGGCGTCTATTGCTTGTGAACTTGTGGATGTTTTT
CACCAAAAACTGCCGTTTGATTTTGATCGATTATAACTCTTACAACTTAC
AACCGACCAGCCCACCAATTGTTGTCGATCCCGTTCGTGGTCAGATAAGA
CATCGAGAGATAAAAAAAAAATCCCTACGGTATTACCTACAAGTATACAA
GTAGTGCATACATAGAAGGAATTGACACAAACTCTCGAGAAAACAGAGGG
GACATATCTCGGAGCTTGGGCCTGCTAAAAATAAAAGACAAGAAAAAAAA
CGCCCCCCTCTCCTACAAGTACAGGAAACAAGATGGGTTCAGCGCACCCG
CGATGTCGCCGTTGAGTCTGGAAACCGTCACGCAAAAAACTAAAAATAAA
CGCACCGTGAACCACGAGCGCGAGAGATGAATCATGAAATGTGGTAGCCC
AGGGAGAAAAAAACAAGCAACCACTGGAAGAAGCAGAGGAACAATAACAG
ACACACTCCAAAGTCTACCTCGTTCCCCGTCCCCTTGGCACCGTCCACTG
TCACTCGAAGTATAAACTCGAAAAAAAGAAACAGAACTTACAGTAGTAGG
AGCTTCACGCTATTTATTTCAAAGTCATGACTTTTTGCAAGGTCGTAAGG
TACTGGGCTCATTTCGTTCAGGTGTGTGTCAATAATTTATCTGTAACCTC
ATCTTCCGTCGGCGATATCATATCCTCATTACGTGCAACAAGAAGATAAG
TGATCACGTCAGTTTATCATTTTCTCCCGCGTTCTCAGTACTTGTACTCC
GGTCGGTTGCAGACTTTTTTCATGTTTTCCTTCAAGCGTGCGCTACAGTA
AAGTTGCAGTGCTTGCAAACGCGTCTCTACAGTTGTAAAACGGAAATTTG
AAATTTCCACCATCGAACTAAAAGCCCTTCCCTATCCTTCCAGAAATTTA
CGTGAAGTTCAAGTTCATTACTTCTACTAGGTCCGATGGTGTATCTAAAA
ACACAAATCACACGGCCACAATGCTGAAAAATGCGACGAAGAATCACACG
GCTACAATTCTGAAAAATGCGACATAAATACACGAATATTGCAAAATTAC
TGAAGACTACTATGGAACCATGCCGTAAGACTGGATTTTTCTTCACGAGA
TGCTTCATGTTTCTCGGTTATTCCCAAGGTCGGTGCCTGGAATTTTTTTC
GGACCAAAATACGATGAAATTAAATCGGCCGATACATCTTGTGTGTTAGC
ATCGACCTTTTCACAGTAGGTTGTTGCCAACGGCAAGGCATCAGGAATCG
GTAGCTGTTTTTAGCAGCGTTCTACTTACTGCCGCATGGTCGGATGCAGG
GGGGCTCGTAGATTGCGCAGCTGGAAGGTTGGTAACCCCCCCCCCCCCCC
CCTTTTTGGCCGCTTATTCCAGTTTTATCATCCATACTCTAATCAGTATA
TTACGTGTTGGCCAACGGCGGCGACCGCAACCCACGCCCGATACGATGCG
ACAGCGGCTCTCAGAGGGACACTTTGCCATTTATTTCAAGCGCTTACATG
CATACTGTATGCATGCATATGAATTAGGCGGTCTTCGAGGAATTGCTTAT
GATGCTGCATGAAAGACACCACGCACGCCTTAGGGGTTTCCAGAGAGGGG
ACGGAGCTTATATGACCCCCCCCCCGCTCTGATCCTTATTCCAGTTTTGT
ACCTACCTTCCAGCATCCACAATCCGCTAGACCCCTTGTCGGATTGGAGT
GGGGGGTTCCACTGCGTGGAAGTGTGCATGTTCGTTGCCTACAACTGGTC
TCGAGCTCTTTACCATCAACACTTGTGCCCGTGCGTTTGTTCGCAGGCAG
ACCAGGTAGCATTGGCAGGATATGTCCCTGCCTGAGAGCATCGTGCTGCC
GCAGACCCGCGAGGCGGAGACTATTCGCAGGTACGCGCTGGGCCAGGCCG
ACCCCTCTTACTTCGAGAAAGATGCGGCCCCAATTTTCGCAGACAACATG
GTTTTCAACGGCCTCCTCTTCAAGGTGGCCGGGGGAGAGAACGTTCGAGG
GGTTTTTGCCACCTTCGTGAAGGATATCATTGTCGAGGTGAGCTTCATGA
TGACTGGTACAAATACGCTATTGTAGCCTCTGCCACGTGTTCCATCGCAT
GATACCTCTGCAGTTTGCGTTTCTCTTGATCCAGATCTCGTCTTTGATGA
CAGGGGATCATCCCATTTCTCCACGTTACGTGCATTCGTCTTTGCCGCGC
GTTGGTACGTTTAGGACTCCCACAGCGCGCCTTCTTCTCGGATTTTGCTA
ACTAACGGTATCGTGTTTTCCGCTGCAGAACATATAAACTAAAGTGCGTG
AACCGTGTGTATCGGGATTGAATCGTGTACCTCTGACACCGAGGACGGTT
GTGTTACCGTTTGAGTCCCTGGGGCGCCGCAGGGCAGTGCGATTGCTGAT
CTCCCAACCACAGACAGATCACGCGCCCAGACAAAGATTTTACGACAACA
ATCCTCGCGAAACCACAACCAACGAAAGGGTACGGCCAGTCTCAGGCGAC
GCCGTCACTGTTCTGGTTCATGGTGTTTGAGCGACGCCTCTTGGCGCTTT
TTTTTTGTACCTATCACAGGGGCGATCACGTCCTCGCAACTGTAGCACCT
CCACGTGTGACACGCATGCCGTACTCGACCAATAACACTGCTTCCCCTAA
GCCCCTCCTACCGTAGTCGTAGTCATTGAACATACCCCACGACAAAATCA
CTCGAGCAAACTCTGGGCCAGACTGTTGCGGGCAGCTCCTCTCGAGGACA
TTTGCTAGCGATGCCTGCGTAAACCCCTGTATCTGTGATGGGGTGTATGC
CCGGTGGCCGCGTGATCGCCACTGAAGCCGGCACACGATTGACGGGTACG
TTAATACCTCCCAAAATATAACGACGATCTGGCAACCTTACCCTCCCCGT
TCGAAAACTGGACACACCAGGTCAAGTTCGACTCTATCGTCGAGTGCGGA
TCAAAGGACAAATACCTGTTCCTCTACTTCCTGAGGCTGCAAGGGATGGG
AGAGAATGGACTCTACATATGCGATTATATCACCCTTGATGAATCCGGCC
TCATGGTCCGCATGGAGAACTGCTACGACACGTCCAAGTGCCCTCAGGAG
TTTATCAACGCTGGGGCCCAAGCCACTGCCCAGGCGGAGGAGATTTTCAA
GCAGCTTAATGGGTCCTAATAAAACGGCCAGGGTGGTGTGGAATCTAGTC
GTATGTGTCTTTGTCCTGATCAGTCATTGCCTCTGCGGCCGCCATGCTCC
AAACCATTTCTCTTTTGCGGTGGTTAAGCCTTTAAGGCGAAAGCAGCAAT
GGCGACATCTATCGTGGGTGTGGCCGCCGCTCTGGGGACCGACGTCGTGC
GTATTGCCCGGGGGACATCTCCAGCATTGAGATAGTAGATTCTTCACAAG
GACAGCTAGCTGCGTCTTGAAAGCAAGCCGGACTCTAGAGTATAGCATCA
AGGGGAGAGGGAAGTTCGGTGGGTAGCTAAGACGGCTTTGGGGTGGAGGC
GTTAAGGTTTTGGGTATTGTTCGAGGTTTAATATTATTTTGCTGGGGTGT
TTCGTGGCAAACAAGGTAAACGGATAAATA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8552:1947..6626-

>mRNA_S-dermatodea_contig8552.16718.1 ID=mRNA_S-dermatodea_contig8552.16718.1|Name=mRNA_S-dermatodea_contig8552.16718.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at S-dermatodea_contig8552:1947..6626- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCCTGCCTGAGAGCATCGTGCTGCCGCAGACCCGCGAGGCGGAGAC
TATTCGCAGGTACGCGCTGGGCCAGGCCGACCCCTCTTACTTCGAGAAAG
ATGCGGCCCCAATTTTCGCAGACAACATGGTTTTCAACGGCCTCCTCTTC
AAGGTGGCCGGGGGAGAGAACGTTCGAGGGGTTTTTGCCACCTTCGTGAA
GGATATCATTGTCGAGATGTCCCTGCCTGAGAGCATCGTGCTGCCGCAGA
CCCGCGAGGCGGAGACTATTCGCAGGTACGCGCTGGGCCAGGCCGACCCC
TCTTACTTCGAGAAAGATGCGGCCCCAATTTTCGCAGACAACATGGTTTT
CAACGGCCTCCTCTTCAAGGTGGCCGGGGGAGAGAACGTTCGAGGGGTTT
TTGCCACCTTCGTGAAGGATATCATTGTCGAGGTCAAGTTCGACTCTATC
GTCGAGTGCGGATCAAAGGACAAATACCTGTTCCTCTACTTCCTGAGGCT
GCAAGGGATGGGAGAGAATGGACTCTACATATGCGATTATATCACCCTTG
ATGAATCCGGCCTCATGGTCCGCATGGAGAACTGCTACGACACGTCCAAG
TGCCCTCAGGAGTTTATCAACGCTGGGGCCCAAGCCACTGCCCAGGCGGA
GGAGATTTTCAAGCAGCTTAATGGGTCCTAAGTCAAGTTCGACTCTATCG
TCGAGTGCGGATCAAAGGACAAATACCTGTTCCTCTACTTCCTGAGGCTG
CAAGGGATGGGAGAGAATGGACTCTACATATGCGATTATATCACCCTTGA
TGAATCCGGCCTCATGGTCCGCATGGAGAACTGCTACGACACGTCCAAGT
GCCCTCAGGAGTTTATCAACGCTGGGGCCCAAGCCACTGCCCAGGCGGAG
GAGATTTTCAAGCAGCTTAATGGGTCCTAA
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