mRNA_S-dermatodea_contig1273.1671.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1273.1671.1
Unique NamemRNA_S-dermatodea_contig1273.1671.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1273.1671.1 vs. uniprot
Match: D8LCH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH2_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 1.190e-51
Identity = 95/146 (65.07%), Postives = 112/146 (76.71%), Query Frame = 1 
Query:   22 LTLPSVEPLLYVPVPAIAELVANRSEAEVLLRIGMLAHEFDHLMTYLAQWLEHQQ------CLRVDCLPADGESGSQASSLAPLTYQARLANRHGVKALQQRVTECLQKLQRHMDAVQVYANQNASFAQELRLCGLGARADQRRRL 441
            L LP  EPLL+VPV AI E V+NRSEAEVLLRIG L HEFDHL   L QWLEH+Q      CL+ +  P +    S   SL PL +QAR+ NRHGV+ LQ+++TECLQ+LQR+MDAVQV+ANQNASF+QELRLCGLG RA+QRRRL
Sbjct:    6 LRLPRAEPLLHVPVSAIVEFVSNRSEAEVLLRIGDLGHEFDHLTRTLVQWLEHEQHLTADGCLQEEQQPVEDSGESLVLSLVPLAHQARVVNRHGVRVLQEKITECLQQLQRYMDAVQVFANQNASFSQELRLCGLGDRAEQRRRL 151
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BLAST of mRNA_S-dermatodea_contig1273.1671.1 vs. uniprot
Match: A0A6H5JFN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN0_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 3.350e-47
Identity = 98/163 (60.12%), Postives = 115/163 (70.55%), Query Frame = 1 
Query:   16 DR-LTLPSVEPLLYVPVPAIAELVANRSEAEVLLRIGMLAHEFDHLMTYLAQWLEHQQ------CLRVDCLPADGESGSQASSLAPLTYQARLANRHGVKALQQRVTECLQKLQRHM--------------DAVQVYANQNASFAQELRLCGLGARADQRRRL 441
            DR L LP  EPLL+VPV AI E V+NRSEAEVLLRIG L HEFDHL   L QWLEH+Q      CL+ +  PA+    S   SL PL +QAR+ NRHGV+ LQQ++TECLQ+LQR+M              DAVQV+A+QNASF+QELRLCGLG RA+QRRRL
Sbjct:   23 DRALRLPRAEPLLHVPVSAIVEFVSNRSEAEVLLRIGDLGHEFDHLTRTLVQWLEHEQHLTADGCLQEEQQPAEDTGESLVLSLVPLAHQARVVNRHGVRVLQQKITECLQQLQRYMVGVVQGDGFGKWTMDAVQVFADQNASFSQELRLCGLGDRAEQRRRL 185
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1273.1671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCH2_ECTSI1.190e-5165.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFN0_9PHAE3.350e-4760.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1273contigS-dermatodea_contig1273:14187..15715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size444
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1273.1671.1prot_S-dermatodea_contig1273.1671.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1273 14199..15715 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924259.6170464-UTR-S-dermatodea_contig1273:14186..141981622924259.6170464-UTR-S-dermatodea_contig1273:14186..14198Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1273 14187..14198 +
1694079131.859711-UTR-S-dermatodea_contig1273:14186..141981694079131.859711-UTR-S-dermatodea_contig1273:14186..14198Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1273 14187..14198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924259.6312714-CDS-S-dermatodea_contig1273:14198..142851622924259.6312714-CDS-S-dermatodea_contig1273:14198..14285Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1273 14199..14285 +
1694079131.8686695-CDS-S-dermatodea_contig1273:14198..142851694079131.8686695-CDS-S-dermatodea_contig1273:14198..14285Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1273 14199..14285 +
1622924259.6410763-CDS-S-dermatodea_contig1273:14536..146231622924259.6410763-CDS-S-dermatodea_contig1273:14536..14623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1273 14537..14623 +
1694079131.8781605-CDS-S-dermatodea_contig1273:14536..146231694079131.8781605-CDS-S-dermatodea_contig1273:14536..14623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1273 14537..14623 +
1622924259.65102-CDS-S-dermatodea_contig1273:15055..151281622924259.65102-CDS-S-dermatodea_contig1273:15055..15128Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1273 15056..15128 +
1694079131.8867528-CDS-S-dermatodea_contig1273:15055..151281694079131.8867528-CDS-S-dermatodea_contig1273:15055..15128Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1273 15056..15128 +
1622924259.6619594-CDS-S-dermatodea_contig1273:15332..154181622924259.6619594-CDS-S-dermatodea_contig1273:15332..15418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1273 15333..15418 +
1694079131.8964353-CDS-S-dermatodea_contig1273:15332..154181694079131.8964353-CDS-S-dermatodea_contig1273:15332..15418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1273 15333..15418 +
1622924259.6731477-CDS-S-dermatodea_contig1273:15616..157151622924259.6731477-CDS-S-dermatodea_contig1273:15616..15715Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1273 15617..15715 +
1694079131.9051056-CDS-S-dermatodea_contig1273:15616..157151694079131.9051056-CDS-S-dermatodea_contig1273:15616..15715Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1273 15617..15715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1273.1671.1

>prot_S-dermatodea_contig1273.1671.1 ID=prot_S-dermatodea_contig1273.1671.1|Name=mRNA_S-dermatodea_contig1273.1671.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=144bp
MDRLTLPSVEPLLYVPVPAIAELVANRSEAEVLLRIGMLAHEFDHLMTYL
AQWLEHQQCLRVDCLPADGESGSQASSLAPLTYQARLANRHGVKALQQRV
TECLQKLQRHMDAVQVYANQNASFAQELRLCGLGARADQRRRL*
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mRNA from alignment at S-dermatodea_contig1273:14187..15715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1273.1671.1 ID=mRNA_S-dermatodea_contig1273.1671.1|Name=mRNA_S-dermatodea_contig1273.1671.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1529bp|location=Sequence derived from alignment at S-dermatodea_contig1273:14187..15715+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TAGACCATCAGCATGGATCGACTGACACTTCCTAGCGTGGAGCCCTTGCT
GTATGTTCCTGTTCCAGCTATCGCCGAGCTTGTCGCCAACAGGAGCGAGG
TGAATCACCGAATGGGCCTCTCTTTGCTCCTTATCATACTGACATGGACA
GCAGTCTGGCAGTTGAAGGATATGTTATTTGTGATTTATCTTACATACAA
CAACAGTATAAAAACCAAAGCTGACAGTCCCTCGTGATGATTTGACGATT
TGACGAGTTCGCGTTGGAGTTGACGATTTGACCCCTGCTGCTGTTGGTTC
TGCCGTGTCGAATTGGGCTGACGTGTGGGGTCGCCCCCTGCGCATCGTAG
GCGGAAGTCCTCCTGCGCATCGGAATGCTGGCTCACGAGTTCGACCACCT
GATGACCTACCTAGCGCAATGGCTTGAGCACCAGCAGGTGAGAGCACCAC
CTACAGGTGAGCACCACATGGTTGCTCTGGTCCACGCCCAGAATGGACGT
TCTTTGTGTGCAGCAGTACCCTGTACAGCAGTACAAGTACTTGTAGTAGT
ATATAGTATCCTCAAATCCAATGACACGCGAGCTTTTTTAAATGTTGCAT
GATAGCTTACTAAATCCACAAACAAGTGCGCAATGAGAGAAGATATGCGC
ACGAGTAGAATTATAGGCATATCGGTATCAATGCGGATATCGCGCGGCTC
CTATTATTATCCTTGTACAAGTACAAGTAGGCAAGGCGGTTGAGTTGTGC
TCCGCAAATCAATGCCATGCCGTCACATGATTTTTACCGTCTCCAACGCT
TGCCCCTCCCCCCTGTCCCGTGTCTCTTGTGTCGGGTCACACTCATCGCA
TGGCGCTACACCCGTCCAGTGCCTGAGAGTAGATTGCCTCCCAGCGGATG
GGGAAAGTGGATCGCAGGCATCGTCTCTGGCGCCGTTGACATGTGAGCGT
TCTGATTATACAATTGCTCGCACTCCCTCGAGAGTCGATTCGAAAGCTTG
CTTGCTTGCTTGCTTGCTTGTGTTCGCAGGGCTCGCGAATCTTTTATTAA
GTCCTCGAGAGCACGCAGATCGCATCAATTACTTCGCATGACTGCCGCGA
GGCTAATGTTGGACTCTGCGCGCGCAATGGACCTCCCGTTATGCAGACCA
GGCGCGCTTAGCCAACAGGCATGGGGTGAAGGCGCTGCAGCAGCGGGTGA
CGGAATGCCTGCAGAAGCTGCAGCGGCACATGGTGAGCGAAAACAAAGCG
GTCGTCGTTGGTGCATAAGTAGCCTCGTCCTCTGGCGTTCCGACCCTTTA
CAGATATAATAGTATACAGTAGTGCACGCGGAGTTTGGTGCCCGCTTGCG
AGGGCACTCGATCAATGCATGCTGTTGTAGTTTGCATGGGGTTTGATCTT
TCCATTCGCGTTCGCACGCCCTGACCACAGGACGCGGTCCAGGTGTACGC
CAACCAGAACGCCTCCTTCGCGCAGGAGCTACGCCTCTGCGGGCTGGGAG
CACGCGCCGACCAGCGGCGCCGACTGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1273:14187..15715+

>mRNA_S-dermatodea_contig1273.1671.1 ID=mRNA_S-dermatodea_contig1273.1671.1|Name=mRNA_S-dermatodea_contig1273.1671.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at S-dermatodea_contig1273:14187..15715+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATCGACTGACACTTCCTAGCGTGGAGCCCTTGCTGTATGTTCCTGT
TCCAGCTATCGCCGAGCTTGTCGCCAACAGGAGCGAGATGGATCGACTGA
CACTTCCTAGCGTGGAGCCCTTGCTGTATGTTCCTGTTCCAGCTATCGCC
GAGCTTGTCGCCAACAGGAGCGAGGCGGAAGTCCTCCTGCGCATCGGAAT
GCTGGCTCACGAGTTCGACCACCTGATGACCTACCTAGCGCAATGGCTTG
AGCACCAGCAGGCGGAAGTCCTCCTGCGCATCGGAATGCTGGCTCACGAG
TTCGACCACCTGATGACCTACCTAGCGCAATGGCTTGAGCACCAGCAGTG
CCTGAGAGTAGATTGCCTCCCAGCGGATGGGGAAAGTGGATCGCAGGCAT
CGTCTCTGGCGCCGTTGACATTGCCTGAGAGTAGATTGCCTCCCAGCGGA
TGGGGAAAGTGGATCGCAGGCATCGTCTCTGGCGCCGTTGACATACCAGG
CGCGCTTAGCCAACAGGCATGGGGTGAAGGCGCTGCAGCAGCGGGTGACG
GAATGCCTGCAGAAGCTGCAGCGGCACATGACCAGGCGCGCTTAGCCAAC
AGGCATGGGGTGAAGGCGCTGCAGCAGCGGGTGACGGAATGCCTGCAGAA
GCTGCAGCGGCACATGGACGCGGTCCAGGTGTACGCCAACCAGAACGCCT
CCTTCGCGCAGGAGCTACGCCTCTGCGGGCTGGGAGCACGCGCCGACCAG
CGGCGCCGACTGTAAGACGCGGTCCAGGTGTACGCCAACCAGAACGCCTC
CTTCGCGCAGGAGCTACGCCTCTGCGGGCTGGGAGCACGCGCCGACCAGC
GGCGCCGACTGTAA
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