mRNA_S-dermatodea_contig85509.16715.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85509.16715.1
Unique NamemRNA_S-dermatodea_contig85509.16715.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig85509.16715.1 vs. uniprot
Match: A0A6H5L2R8_9PHAE (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2R8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.280e-16
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 VTVFKSLTNLVIVTGDYFWHQQGVSALVLLSLVVMTVGAILASWNDIEFK 150
            VTVFKSLTNL+IV GDYFWH Q  + LVLLSL VMT GAILASW+DIEF 
Sbjct:  176 VTVFKSLTNLIIVAGDYFWHSQVATPLVLLSLAVMTGGAILASWSDIEFS 225
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BLAST of mRNA_S-dermatodea_contig85509.16715.1 vs. uniprot
Match: D8LTL4_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL4_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.750e-10
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 VTVFKSLTNLVIVTGDYFWHQQGVSALVLLSLVVMTVGAILASWNDIEFK 150
            VTVFK+LTN+VIVTGD+++ QQ  S LV+ S+ VM  GA+ AS+ND++F 
Sbjct:  119 VTVFKNLTNIVIVTGDWWFFQQAASWLVMFSMAVMVFGALFASYNDLDFN 168
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BLAST of mRNA_S-dermatodea_contig85509.16715.1 vs. uniprot
Match: A0A7S2FDK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDK8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 9.860e-9
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 VTVFKSLTNLVIVTGDYFWHQQGVSALVLLSLVVMTVGAILASWNDIEFK 150
            +TVFK+LTN++IV GD++WH+Q V+  V+ S  +M VGA+ A+  D+ F 
Sbjct:    8 ITVFKNLTNVIIVIGDWYWHEQAVTIGVVFSFGIMVVGAVAAAATDVMFS 57
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BLAST of mRNA_S-dermatodea_contig85509.16715.1 vs. uniprot
Match: A0A7S2SW66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW66_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.600e-8
Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 VTVFKSLTNLVIVTGDYFWHQQGVSALVLLSLVVMTVGAILASWNDIEFK 150
            +TVFK+LTN++IV GD++WH Q ++  ++ +  VM VGA+ A+ ND+ F 
Sbjct:  112 ITVFKNLTNILIVAGDWYWHGQRITLGIIAAFGVMVVGAVFAAKNDVLFS 161
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BLAST of mRNA_S-dermatodea_contig85509.16715.1 vs. uniprot
Match: A0A836C853_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C853_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.620e-6
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 VTVFKSLTNLVIVTGDYFWHQQGVSALVLLSLVVMTVGAILASWNDIE 144
            VTVFK+LTN++IV GD+ ++ Q V+ L+L SL VM  GA LA  +D+E
Sbjct:  105 VTVFKNLTNVIIVWGDWHFYNQSVTLLILASLGVMVFGAALAGKDDME 152
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BLAST of mRNA_S-dermatodea_contig85509.16715.1 vs. uniprot
Match: A0A1W0A2B2_9STRA (GDP-mannose transporter n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2B2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.980e-6
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 VTVFKSLTNLVIVTGDYFWHQQGVSALVLLSLVVMTVGAILASWNDIEFK 150
            VTVFK++TNL+IV G+Y    + V  LVL SLVVM +GA+L S++D+  K
Sbjct:  108 VTVFKNVTNLIIVFGEYRLFGEKVGPLVLGSLVVMLMGAVLTSYSDVGGK 157
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BLAST of mRNA_S-dermatodea_contig85509.16715.1 vs. uniprot
Match: A0A425C448_9STRA (EamA domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C448_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.110e-6
Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 VTVFKSLTNLVIVTGDYFWHQQGVSALVLLSLVVMTVGAILASWNDI 141
            VTVFK++TN++IV G++ +  + V  LVL+SLVVM +GA+++S++D+
Sbjct:  111 VTVFKNVTNIIIVFGEWRFFGERVGGLVLVSLVVMLMGAVMSSYSDV 157
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BLAST of mRNA_S-dermatodea_contig85509.16715.1 vs. uniprot
Match: A0A3F2RNX0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNX0_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.060e-5
Identity = 23/50 (46.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VTVFKSLTNLVIVTGDYFWHQQGVSALVLLSLVVMTVGAILASWNDIEFK 150
            VTVFK++TN++IV G++ +  + V  LV+LSL VM +GA ++S++D+  K
Sbjct:  128 VTVFKNVTNIIIVVGEWRFFGERVGGLVILSLCVMLMGAFMSSYSDVGGK 177
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BLAST of mRNA_S-dermatodea_contig85509.16715.1 vs. uniprot
Match: A0A067BT99_SAPPC (EamA domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BT99_SAPPC)

HSP 1 Score: 49.7 bits (117), Expect = 1.440e-5
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 VTVFKSLTNLVIVTGDYFWHQQGVSALVLLSLVVMTVGAILASWNDIEFK 150
            VTVFK++TNL+IV G+Y    + V  +VL SL VM +GAIL S++D+  K
Sbjct:  110 VTVFKNVTNLIIVFGEYRLFGEKVGPMVLGSLAVMLMGAILTSYSDVGGK 159
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BLAST of mRNA_S-dermatodea_contig85509.16715.1 vs. uniprot
Match: A0A1V9YMT6_9STRA (GDP-mannose transporter n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMT6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.970e-5
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 VTVFKSLTNLVIVTGDYFWHQQGVSALVLLSLVVMTVGAILASWNDIEFK 150
            VTVFK++TNL+IV G+Y    + V  +VL SL VM +GA+L S++D+  K
Sbjct:  108 VTVFKNVTNLIIVFGEYRLFGEKVGPMVLGSLAVMLMGAVLTSYSDVGGK 157
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85509.16715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5L2R8_9PHAE1.280e-1678.00TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LTL4_ECTSI1.750e-1058.00TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2FDK8_9STRA9.860e-948.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SW66_9STRA6.600e-846.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836C853_9STRA1.620e-654.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1W0A2B2_9STRA2.980e-654.00GDP-mannose transporter n=1 Tax=Thraustotheca clav... [more]
A0A425C448_9STRA4.110e-648.94EamA domain-containing protein n=1 Tax=Peronospora... [more]
A0A3F2RNX0_9STRA1.060e-546.00Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A067BT99_SAPPC1.440e-552.00EamA domain-containing protein n=3 Tax=Saprolegnia... [more]
A0A1V9YMT6_9STRA1.970e-550.00GDP-mannose transporter n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85509contigS-dermatodea_contig85509:102..254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue6.6e-14
Seed eggNOG ortholog2880.D7G4P6
Preferred nameVRG4
KEGG koko:K14835,ko:K15356
KEGG TC2.A.7.13
GOsGO:0000139,GO:0000271,GO:0003674,GO:0005215,GO:0005338,GO:0005458,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0007163,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009272,GO:0009987,GO:0010383,GO:0012505,GO:0015780,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016051,GO:0019538,GO:0022857,GO:0030447,GO:0030448,GO:0031090,GO:0031224,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0036080,GO:0036211,GO:0040007,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0051278,GO:0055085,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071852,GO:0071966,GO:0090480,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901264,GO:1901505,GO:1901564,GO:1901566,GO:1901576,GO:1990570
EggNOG free text desc.nucleotide-sugar transmembrane transporter activity
EggNOG OGsCOG5070@1,KOG1444@2759
EC2.1.1.310
COG Functional cat.GOU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000,ko03009
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionGDP-mannose transporter
Ec32 orthologEc-00_007820.1
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925351.15503-CDS-S-dermatodea_contig85509:101..2541622925351.15503-CDS-S-dermatodea_contig85509:101..254Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85509 102..254 -
1694079874.5989983-CDS-S-dermatodea_contig85509:101..2541694079874.5989983-CDS-S-dermatodea_contig85509:101..254Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85509 102..254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85509.16715.1prot_S-dermatodea_contig85509.16715.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85509 102..254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85509.16715.1

>prot_S-dermatodea_contig85509.16715.1 ID=prot_S-dermatodea_contig85509.16715.1|Name=mRNA_S-dermatodea_contig85509.16715.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=51bp
VTVFKSLTNLVIVTGDYFWHQQGVSALVLLSLVVMTVGAILASWNDIEFK
*
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mRNA from alignment at S-dermatodea_contig85509:102..254-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85509.16715.1 ID=mRNA_S-dermatodea_contig85509.16715.1|Name=mRNA_S-dermatodea_contig85509.16715.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at S-dermatodea_contig85509:102..254- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTACGGTGTTCAAGAGCCTCACCAATCTCGTGATCGTGACGGGGGATTA
CTTCTGGCACCAACAGGGCGTTTCCGCCCTCGTATTGCTCAGCCTGGTGG
TCATGACCGTGGGCGCCATCCTGGCCTCTTGGAATGACATCGAATTCAAG
TGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig85509:102..254-

>mRNA_S-dermatodea_contig85509.16715.1 ID=mRNA_S-dermatodea_contig85509.16715.1|Name=mRNA_S-dermatodea_contig85509.16715.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at S-dermatodea_contig85509:102..254- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTACGGTGTTCAAGAGCCTCACCAATCTCGTGATCGTGACGGGGGATTA
CTTCTGGCACCAACAGGGCGTTTCCGCCCTCGTATTGCTCAGCCTGGTGG
TCATGACCGTGGGCGCCATCCTGGCCTCTTGGAATGACATCGAATTCAAG
TGAGTTACGGTGTTCAAGAGCCTCACCAATCTCGTGATCGTGACGGGGGA
TTACTTCTGGCACCAACAGGGCGTTTCCGCCCTCGTATTGCTCAGCCTGG
TGGTCATGACCGTGGGCGCCATCCTGGCCTCTTGGAATGACATCGAATTC
AAGTGA
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