mRNA_S-dermatodea_contig85498.16712.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85498.16712.1
Unique NamemRNA_S-dermatodea_contig85498.16712.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85498.16712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85498contigS-dermatodea_contig85498:2..659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size658
Cds size450
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925350.600218-UTR-S-dermatodea_contig85498:1..2091622925350.600218-UTR-S-dermatodea_contig85498:1..209Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85498 2..209 +
1694079874.150174-UTR-S-dermatodea_contig85498:1..2091694079874.150174-UTR-S-dermatodea_contig85498:1..209Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85498 2..209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925350.6140692-CDS-S-dermatodea_contig85498:209..6591622925350.6140692-CDS-S-dermatodea_contig85498:209..659Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85498 210..659 +
1694079874.160104-CDS-S-dermatodea_contig85498:209..6591694079874.160104-CDS-S-dermatodea_contig85498:209..659Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85498 210..659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85498.16712.1prot_S-dermatodea_contig85498.16712.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85498 210..659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85498.16712.1

>prot_S-dermatodea_contig85498.16712.1 ID=prot_S-dermatodea_contig85498.16712.1|Name=mRNA_S-dermatodea_contig85498.16712.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=150bp
MTIIPSPFGSDYADRLYVCKSIKNQNQSKILQTVTNCFSKFTVIKSFFCH
SSQNTISQYSHHSLVHTNLHSSKKIPCNQKHKNQSTIFQYSHHSLVHTNP
QNPRRCHAIKNTKINTSPKNPTLYHKFITKSWCSSNDFWPRTLVRLRWR*
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mRNA from alignment at S-dermatodea_contig85498:2..659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85498.16712.1 ID=mRNA_S-dermatodea_contig85498.16712.1|Name=mRNA_S-dermatodea_contig85498.16712.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=658bp|location=Sequence derived from alignment at S-dermatodea_contig85498:2..659+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGTATGCATCTTCATGTATGGCAAGTCAATTATACGCCAATGAAAATGC
TGTATACTTTCCAAAATGTCCCATGAAAACTCCTCAAACCTAACAGCCCC
CTGCTCGAATGCATCTTCATGTATGGCAAGTCAATTATACGCCAATGAAA
ATGCTATATACTTTCCAAAATGCCCCATGATCTCCCCAAAATTACCTCAA
AATAACAAATGACGATTATCCCCTCTCCATTCGGGTCGGATTATGCCGAT
CGGCTATACGTGTGCAAATCAATCAAAAATCAAAATCAATCAAAAATTCT
TCAAACCGTCACGAATTGCTTCTCCAAATTTACTGTTATAAAATCCTTTT
TCTGTCATTCAAGTCAAAACACAATATCCCAATACTCTCATCATTCGCTT
GTTCACACAAATCTCCACTCCTCCAAGAAAATTCCATGCAACCAAAAACA
CAAAAATCAAAGCACAATATTCCAATACTCTCATCATTCGCTTGTTCACA
CAAATCCCCAAAATCCCCGAAGATGCCATGCAATCAAAAACACAAAAATC
AATACAAGTCCCAAAAACCCAACTCTTTATCACAAATTCATCACAAAATC
GTGGTGCAGCTCAAACGACTTCTGGCCAAGAACCTTAGTGCGGCTCCGGT
GGCGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig85498:2..659+

>mRNA_S-dermatodea_contig85498.16712.1 ID=mRNA_S-dermatodea_contig85498.16712.1|Name=mRNA_S-dermatodea_contig85498.16712.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at S-dermatodea_contig85498:2..659+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGATTATCCCCTCTCCATTCGGGTCGGATTATGCCGATCGGCTATA
CGTGTGCAAATCAATCAAAAATCAAAATCAATCAAAAATTCTTCAAACCG
TCACGAATTGCTTCTCCAAATTTACTGTTATAAAATCCTTTTTCTGTCAT
TCAAGTCAAAACACAATATCCCAATACTCTCATCATTCGCTTGTTCACAC
AAATCTCCACTCCTCCAAGAAAATTCCATGCAACCAAAAACACAAAAATC
AAAGCACAATATTCCAATACTCTCATCATTCGCTTGTTCACACAAATCCC
CAAAATCCCCGAAGATGCCATGCAATCAAAAACACAAAAATCAATACAAG
TCCCAAAAACCCAACTCTTTATCACAAATTCATCACAAAATCGTGGTGCA
GCTCAAACGACTTCTGGCCAAGAACCTTAGTGCGGCTCCGGTGGCGGTGA
ATGACGATTATCCCCTCTCCATTCGGGTCGGATTATGCCGATCGGCTATA
CGTGTGCAAATCAATCAAAAATCAAAATCAATCAAAAATTCTTCAAACCG
TCACGAATTGCTTCTCCAAATTTACTGTTATAAAATCCTTTTTCTGTCAT
TCAAGTCAAAACACAATATCCCAATACTCTCATCATTCGCTTGTTCACAC
AAATCTCCACTCCTCCAAGAAAATTCCATGCAACCAAAAACACAAAAATC
AAAGCACAATATTCCAATACTCTCATCATTCGCTTGTTCACACAAATCCC
CAAAATCCCCGAAGATGCCATGCAATCAAAAACACAAAAATCAATACAAG
TCCCAAAAACCCAACTCTTTATCACAAATTCATCACAAAATCGTGGTGCA
GCTCAAACGACTTCTGGCCAAGAACCTTAGTGCGGCTCCGGTGGCGGTGA
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