mRNA_S-dermatodea_contig85466.16711.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85466.16711.1
Unique NamemRNA_S-dermatodea_contig85466.16711.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig85466.16711.1 vs. uniprot
Match: D8LQE4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE4_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 4.750e-28
Identity = 60/80 (75.00%), Postives = 66/80 (82.50%), Query Frame = 1
Query:    1 QADALLVSRSGVPSWLTAMQGDDGWRRTLIELAREHQGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFNGENKPATA 240
            + D LL S   +P+WLTAMQ D GWRRTLIELAREH+ SALLRFVLKQLSD G+HREIA+VISETDLFSVFNG  K A A
Sbjct:  455 KVDTLLDS--SMPAWLTAMQDDTGWRRTLIELAREHRASALLRFVLKQLSDMGYHREIASVISETDLFSVFNGVLKDALA 532          
BLAST of mRNA_S-dermatodea_contig85466.16711.1 vs. uniprot
Match: A0A7S2XIX2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIX2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.800e-11
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    7 DALLVSRSGVPSWLTAMQGDDGWRRTLIELAREHQGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFNG 219
            D +L       ++L  M   D WRR LI+L+  H+ SALL + L+ +S +GHHREIA  I+++D FSVFNG
Sbjct:  405 DNILNLSKAEAAFLEEMIDSDEWRRLLIDLSATHKDSALLMYCLQSISKKGHHREIARRINQSDYFSVFNG 475          
BLAST of mRNA_S-dermatodea_contig85466.16711.1 vs. uniprot
Match: A0A7R9VET2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VET2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.020e-10
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:   67 DGWRRTLIELAREHQGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFN 216
            D WRR LI+L+  H+ SA+L + L+ +S RGHHREIA  I+++D F VFN
Sbjct:    4 DRWRRLLIDLSASHKDSAVLMYCLRSISKRGHHREIARRINQSDYFGVFN 53          
BLAST of mRNA_S-dermatodea_contig85466.16711.1 vs. uniprot
Match: A0A7S3YJY7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJY7_HETAK)

HSP 1 Score: 61.6 bits (148), Expect = 2.170e-10
Identity = 31/73 (42.47%), Postives = 41/73 (56.16%), Query Frame = 1
Query:    1 QADALLVSRSGVPSWLTAMQGDDGWRRTLIELAREHQGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFNG 219
            +ADA+L      P +L  M     WR  L+ L   H+ SALL F  + LS++G H+EIAAV+S  D   VF G
Sbjct:   44 RADAILEELDACPDFLAEMLRKKRWRHALLRLFNRHERSALLGFCARYLSEKGFHKEIAAVLSRPDDLGVFRG 116          
BLAST of mRNA_S-dermatodea_contig85466.16711.1 vs. uniprot
Match: A0A7S4MCL4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MCL4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.150e-9
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 QADALLVSRSGVPSWLTAMQGDDGWRRTLIELAREHQGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFN 216
            + D +L       ++L  M   D WRR LI+L+  H+ SA+L + L+ +S RGHHREIA  I+++D F VFN
Sbjct:  415 KGDEILNLSKTEAAFLEEMIESDRWRRLLIDLSAAHKDSAVLMYCLQTISKRGHHREIARRINQSDYFGVFN 486          
BLAST of mRNA_S-dermatodea_contig85466.16711.1 vs. uniprot
Match: A0A7S1ZHF4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZHF4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.160e-9
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    7 DALLVSRSGVPSWLTAMQGDDGWRRTLIELAREHQGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFN 216
            D++L       ++L  M   + WR+ LI+L+  H+ SALL + L+++S RGHHREIA  I+++D F VFN
Sbjct:  256 DSILSLSKAEVAFLEEMFESNRWRKLLIDLSATHKDSALLMYCLQKISKRGHHREIAKRINQSDYFGVFN 325          
BLAST of mRNA_S-dermatodea_contig85466.16711.1 vs. uniprot
Match: A0A7S1ZHQ3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZHQ3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.180e-9
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    7 DALLVSRSGVPSWLTAMQGDDGWRRTLIELAREHQGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFN 216
            D++L       ++L  M   + WR+ LI+L+  H+ SALL + L+++S RGHHREIA  I+++D F VFN
Sbjct:  256 DSILSLSKAEVAFLEEMFESNRWRKLLIDLSATHKDSALLMYCLQKISKRGHHREIAKRINQSDYFGVFN 325          
BLAST of mRNA_S-dermatodea_contig85466.16711.1 vs. uniprot
Match: A0A1Z5JEL4_FISSO (Negative elongation factor C/D n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEL4_FISSO)

HSP 1 Score: 59.3 bits (142), Expect = 1.970e-8
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    7 DALLVSRSGVPSWLTAMQGDDGWRRTLIELAREHQGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFN 216
            D +L       ++L  M     WR+ LI+L+  H+ SA+L + L+ +S RGHHREIA  ++++D F+VFN
Sbjct:  317 DRILNLSKAEAAFLEEMMDSSRWRKLLIDLSAVHKDSAVLIYCLQAISKRGHHREIAKRVNQSDHFAVFN 386          
BLAST of mRNA_S-dermatodea_contig85466.16711.1 vs. uniprot
Match: A0A7S1GN86_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GN86_CYCTE)

HSP 1 Score: 54.7 bits (130), Expect = 4.490e-7
Identity = 25/70 (35.71%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    7 DALLVSRSGVPSWLTAMQGDDGWRRTLIELAREHQGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFN 216
            D +   +     +L  M   + WR+ LI+L+  ++ S +L + L  +S RGHHREIA  I+++D FSV++
Sbjct:  103 DNIFKLKKSEAVFLEEMMDSERWRKLLIDLSAANRDSTILNYCLSSISKRGHHREIAKRINQSDHFSVYS 172          
BLAST of mRNA_S-dermatodea_contig85466.16711.1 vs. uniprot
Match: A0A7S4EQP7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EQP7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.520e-7
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   43 WLTAMQGDDGWRRTLIELAREHQGSALLRFVLKQLSDRGHHREIAAVISETDLFSVFN 216
            +L  M   + WR+ LI+L+   + SALL + L+ +S RGHHREIA  I++++ F VFN
Sbjct:  671 FLEDMMNSNRWRKLLIDLSASKKDSALLMYCLQSISKRGHHREIARRINQSEHFPVFN 728          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85466.16711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LQE4_ECTSI4.750e-2875.00WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2XIX2_9STRA2.800e-1146.48Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7R9VET2_9STRA2.020e-1054.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S3YJY7_HETAK2.170e-1042.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4MCL4_9STRA1.150e-943.06Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A7S1ZHF4_9STRA1.160e-942.86Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1ZHQ3_9STRA1.180e-942.86Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5JEL4_FISSO1.970e-840.00Negative elongation factor C/D n=2 Tax=Fistulifera... [more]
A0A7S1GN86_CYCTE4.490e-735.71Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S4EQP7_9STRA4.520e-744.83Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85466contigS-dermatodea_contig85466:131..370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.9e-23
Seed eggNOG ortholog2880.D8LQE4
Preferred nameWAC
KEGG koko:K15181
GOsGO:0000075,GO:0000077,GO:0000323,GO:0000993,GO:0001098,GO:0001099,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005764,GO:0005773,GO:0006325,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010390,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031570,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032991,GO:0033523,GO:0033554,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044783,GO:0044877,GO:0045786,GO:0045861,GO:0045893,GO:0045935,GO:0046958,GO:0046959,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0071894,GO:0080090,GO:1901564,GO:1901799,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1990904,GO:2000058,GO:2000059,GO:2000112,GO:2001141
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5104@1,KOG0152@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925350.5729182-CDS-S-dermatodea_contig85466:130..3701622925350.5729182-CDS-S-dermatodea_contig85466:130..370Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85466 131..370 -
1694079874.137145-CDS-S-dermatodea_contig85466:130..3701694079874.137145-CDS-S-dermatodea_contig85466:130..370Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85466 131..370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85466.16711.1prot_S-dermatodea_contig85466.16711.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85466 131..370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85466.16711.1

>prot_S-dermatodea_contig85466.16711.1 ID=prot_S-dermatodea_contig85466.16711.1|Name=mRNA_S-dermatodea_contig85466.16711.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=80bp
QADALLVSRSGVPSWLTAMQGDDGWRRTLIELAREHQGSALLRFVLKQLS
DRGHHREIAAVISETDLFSVFNGENKPATA
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mRNA from alignment at S-dermatodea_contig85466:131..370-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85466.16711.1 ID=mRNA_S-dermatodea_contig85466.16711.1|Name=mRNA_S-dermatodea_contig85466.16711.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at S-dermatodea_contig85466:131..370- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGGACGCGCTGCTGGTTTCTCGGAGTGGCGTTCCGTCGTGGCTGAC AGCCATGCAGGGGGACGATGGCTGGAGGCGGACCCTGATCGAACTCGCCA GGGAGCATCAGGGCTCGGCCCTCCTTCGGTTCGTGCTGAAGCAGCTCAGC GACCGCGGACACCACAGGGAGATCGCCGCGGTGATCAGCGAGACCGACTT GTTCTCGGTTTTTAACGGTGAGAACAAACCCGCTACAGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig85466:131..370-

>mRNA_S-dermatodea_contig85466.16711.1 ID=mRNA_S-dermatodea_contig85466.16711.1|Name=mRNA_S-dermatodea_contig85466.16711.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig85466:131..370- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGGACGCGCTGCTGGTTTCTCGGAGTGGCGTTCCGTCGTGGCTGAC
AGCCATGCAGGGGGACGATGGCTGGAGGCGGACCCTGATCGAACTCGCCA
GGGAGCATCAGGGCTCGGCCCTCCTTCGGTTCGTGCTGAAGCAGCTCAGC
GACCGCGGACACCACAGGGAGATCGCCGCGGTGATCAGCGAGACCGACTT
GTTCTCGGTTTTTAACGGTGAGAACAAACCCGCTACAGCGCAGGCGGACG
CGCTGCTGGTTTCTCGGAGTGGCGTTCCGTCGTGGCTGACAGCCATGCAG
GGGGACGATGGCTGGAGGCGGACCCTGATCGAACTCGCCAGGGAGCATCA
GGGCTCGGCCCTCCTTCGGTTCGTGCTGAAGCAGCTCAGCGACCGCGGAC
ACCACAGGGAGATCGCCGCGGTGATCAGCGAGACCGACTTGTTCTCGGTT
TTTAACGGTGAGAACAAACCCGCTACAGCG
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