mRNA_S-dermatodea_contig85422.16710.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85422.16710.1
Unique NamemRNA_S-dermatodea_contig85422.16710.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig85422.16710.1 vs. uniprot
Match: A0A6H5K7L7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.940e-25
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 QVEHTKTERNVLGYVKHPFIVGLNMAFQTRNKLFFVLDYCAGGELFFHLVR 153
            +VEHTKTERNVLGYVKHPFIVGLNMAFQTR+KLFFVLDYCAGGELFFHLVR
Sbjct:  363 KVEHTKTERNVLGYVKHPFIVGLNMAFQTRDKLFFVLDYCAGGELFFHLVR 413
[Close]
BLAST of mRNA_S-dermatodea_contig85422.16710.1 vs. uniprot
Match: A0A482UKC3_9ARCH (Protein kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UKC3_9ARCH)

HSP 1 Score: 99.8 bits (247), Expect = 2.060e-25
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 QVEHTKTERNVLGYVKHPFIVGLNMAFQTRNKLFFVLDYCAGGELFFHLVRTYA 162
            QVEHTKTERNVLGY+ HPFIVGLNMAFQT +KLFFVLDYCAGGELFFHL +  A
Sbjct:   80 QVEHTKTERNVLGYIHHPFIVGLNMAFQTGDKLFFVLDYCAGGELFFHLGKVSA 133
[Close]
BLAST of mRNA_S-dermatodea_contig85422.16710.1 vs. uniprot
Match: B8C3Y1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3Y1_THAPS)

HSP 1 Score: 102 bits (255), Expect = 7.090e-25
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 QVEHTKTERNVLGYVKHPFIVGLNMAFQTRNKLFFVLDYCAGGELFFHLVRTYAFCFLNTCSYVA 195
            QVEHTKTER+VLGYVKHPFIVGLNMAFQ+++KL+FVLDYCAGGELFFHL +   F     C Y A
Sbjct:   40 QVEHTKTERSVLGYVKHPFIVGLNMAFQSKDKLYFVLDYCAGGELFFHLGKVGKFSEHRACFYAA 104
[Close]
BLAST of mRNA_S-dermatodea_contig85422.16710.1 vs. uniprot
Match: A0A7S2I5Q7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I5Q7_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.780e-25
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 QVEHTKTERNVLGYVKHPFIVGLNMAFQTRNKLFFVLDYCAGGELFFHLVRTYAFCFLNTCSYVA 195
            QVEHTKTER+VLGYVKHPFIVGLNMAFQ+++KL+FVLDYCAGGELFFHL +   F     C Y A
Sbjct:  209 QVEHTKTERSVLGYVKHPFIVGLNMAFQSKDKLYFVLDYCAGGELFFHLGKVGKFPEPRACFYAA 273
[Close]
BLAST of mRNA_S-dermatodea_contig85422.16710.1 vs. uniprot
Match: D7FTC6_ECTSI (Protein kinase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC6_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.260e-24
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 QVEHTKTERNVLGYVKHPFIVGLNMAFQTRNKLFFVLDYCAGGELFFHL 147
            QVEHTKTERNVLGYVKHPFIVGLNMAFQTR+KLFFVLDYCAGGELFFHL
Sbjct:  418 QVEHTKTERNVLGYVKHPFIVGLNMAFQTRDKLFFVLDYCAGGELFFHL 466
[Close]
BLAST of mRNA_S-dermatodea_contig85422.16710.1 vs. uniprot
Match: A0A835YYY2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYY2_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.880e-24
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 QVEHTKTERNVLGYVKHPFIVGLNMAFQTRNKLFFVLDYCAGGELFFHL 147
            QVEHTKTERNVLGYV+HPFIVGLNMAFQTR KLFFVLDYCAGGELFFHL
Sbjct:   86 QVEHTKTERNVLGYVRHPFIVGLNMAFQTREKLFFVLDYCAGGELFFHL 134
[Close]
BLAST of mRNA_S-dermatodea_contig85422.16710.1 vs. uniprot
Match: A0A835Z1H7_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1H7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.080e-24
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 QVEHTKTERNVLGYVKHPFIVGLNMAFQTRNKLFFVLDYCAGGELFFHL 147
            QVEHTKTERNVLGY++HPFIVGLNMAFQTR+KLFFVLDYCAGGELFFHL
Sbjct:  194 QVEHTKTERNVLGYIRHPFIVGLNMAFQTRDKLFFVLDYCAGGELFFHL 242
[Close]
BLAST of mRNA_S-dermatodea_contig85422.16710.1 vs. uniprot
Match: A0A812WZ80_SYMMI (PkgB protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WZ80_SYMMI)

HSP 1 Score: 101 bits (251), Expect = 4.010e-24
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 QVEHTKTERNVLGYVKHPFIVGLNMAFQTRNKLFFVLDYCAGGELFFHLVR 153
            QVEHTKTERNVLGYV HPFIVGLNMAFQT +KLFFVLDYCAGGELFFHL R
Sbjct:  150 QVEHTKTERNVLGYVHHPFIVGLNMAFQTADKLFFVLDYCAGGELFFHLGR 200
[Close]
BLAST of mRNA_S-dermatodea_contig85422.16710.1 vs. uniprot
Match: A0A7S3XWZ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWZ7_HETAK)

HSP 1 Score: 100 bits (248), Expect = 7.870e-24
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 QVEHTKTERNVLGYVKHPFIVGLNMAFQTRNKLFFVLDYCAGGELFFHL 147
            QVEHT+TERNVL YV+HPFIVGLNMAFQTR+KLFFVLDYCAGGELFFHL
Sbjct:   41 QVEHTRTERNVLAYVRHPFIVGLNMAFQTRDKLFFVLDYCAGGELFFHL 89
[Close]
BLAST of mRNA_S-dermatodea_contig85422.16710.1 vs. uniprot
Match: K0SZQ1_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZQ1_THAOC)

HSP 1 Score: 101 bits (252), Expect = 1.520e-23
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 QVEHTKTERNVLGYVKHPFIVGLNMAFQTRNKLFFVLDYCAGGELFFHLVRTYAFCFLNTCSYVA 195
            QVEHT+TER+VLGYVKHPFIVGLNMAFQ+++KL+FVLDYCAGGELFFHL +   F     C Y A
Sbjct:  438 QVEHTRTERSVLGYVKHPFIVGLNMAFQSKDKLYFVLDYCAGGELFFHLGKVGKFSEHRACFYAA 502
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85422.16710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7L7_9PHAE1.940e-2596.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482UKC3_9ARCH2.060e-2585.19Protein kinase domain-containing protein n=1 Tax=a... [more]
B8C3Y1_THAPS7.090e-2573.85Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2I5Q7_9STRA7.780e-2573.85Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
D7FTC6_ECTSI1.260e-2497.96Protein kinase 2 n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A835YYY2_9STRA1.880e-2495.92Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835Z1H7_9STRA3.080e-2493.88Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A812WZ80_SYMMI4.010e-2492.16PkgB protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7S3XWZ7_HETAK7.870e-2491.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K0SZQ1_THAOC1.520e-2372.31Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85422contigS-dermatodea_contig85422:345..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.7e-20
Seed eggNOG ortholog35128.Thaps5802
KEGG koko:K04456,ko:K04688,ko:K08286,ko:K13303
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04350,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04714,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04350,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04714,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG ModuleM00676
EggNOG free text desc.Protein kinase C terminal domain
EggNOG OGs2XAIN@2836,COG0515@1,KOG0690@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925350.541301-CDS-S-dermatodea_contig85422:344..5481622925350.541301-CDS-S-dermatodea_contig85422:344..548Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85422 345..548 +
1694079874.1173909-CDS-S-dermatodea_contig85422:344..5481694079874.1173909-CDS-S-dermatodea_contig85422:344..548Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85422 345..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85422.16710.1prot_S-dermatodea_contig85422.16710.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85422 345..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85422.16710.1

>prot_S-dermatodea_contig85422.16710.1 ID=prot_S-dermatodea_contig85422.16710.1|Name=mRNA_S-dermatodea_contig85422.16710.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=68bp
QVEHTKTERNVLGYVKHPFIVGLNMAFQTRNKLFFVLDYCAGGELFFHLV
RTYAFCFLNTCSYVAFM*
back to top

mRNA from alignment at S-dermatodea_contig85422:345..548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85422.16710.1 ID=mRNA_S-dermatodea_contig85422.16710.1|Name=mRNA_S-dermatodea_contig85422.16710.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at S-dermatodea_contig85422:345..548+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGAACACACGAAGACGGAGAGGAACGTGTTGGGCTACGTTAAGCA
CCCCTTTATCGTGGGTCTTAACATGGCTTTCCAGACCAGGAACAAGCTGT
TCTTCGTGCTCGACTACTGCGCGGGCGGCGAGCTGTTTTTCCACTTGGTA
CGCACATACGCCTTTTGTTTCTTGAATACTTGTAGTTATGTCGCATTTAT
GTAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig85422:345..548+

>mRNA_S-dermatodea_contig85422.16710.1 ID=mRNA_S-dermatodea_contig85422.16710.1|Name=mRNA_S-dermatodea_contig85422.16710.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig85422:345..548+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGAACACACGAAGACGGAGAGGAACGTGTTGGGCTACGTTAAGCA
CCCCTTTATCGTGGGTCTTAACATGGCTTTCCAGACCAGGAACAAGCTGT
TCTTCGTGCTCGACTACTGCGCGGGCGGCGAGCTGTTTTTCCACTTGGTA
CGCACATACGCCTTTTGTTTCTTGAATACTTGTAGTTATGTCGCATTTAT
GTAGCAGGTGGAACACACGAAGACGGAGAGGAACGTGTTGGGCTACGTTA
AGCACCCCTTTATCGTGGGTCTTAACATGGCTTTCCAGACCAGGAACAAG
CTGTTCTTCGTGCTCGACTACTGCGCGGGCGGCGAGCTGTTTTTCCACTT
GGTACGCACATACGCCTTTTGTTTCTTGAATACTTGTAGTTATGTCGCAT
TTATGTAG
back to top