mRNA_S-dermatodea_contig8541.16709.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8541.16709.1
Unique NamemRNA_S-dermatodea_contig8541.16709.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8541.16709.1 vs. uniprot
Match: A0A6H5JPQ6_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPQ6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.590e-8
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 2 
Query:    2 FTADEEERVKVL-NELAKTRDVSRERGAFEVEVSRRTMADGSVERTLLVPGMLDERLKFREMVCICLPFFLTPNPAERQDLASLRALTESLTE 277
              +DE  R+K L   +    D+S E+   ++++++RTMADGS    +L    LD  LK  EM+   LP FL  +P ER+D+ SL  L +SL E
Sbjct:  644 INSDEMTRLKELFQRMTLGEDISAEKELAQIDMTKRTMADGSFAAMMLSADKLDPTLKSPEMLLESLPHFLAADPTERKDMGSLLDLAQSLAE 736
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8541.16709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPQ6_9PHAE5.590e-838.71Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8541contigS-dermatodea_contig8541:6501..7864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size382
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8541.16709.1prot_S-dermatodea_contig8541.16709.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8541 6954..7768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925350.457624-UTR-S-dermatodea_contig8541:6500..65881622925350.457624-UTR-S-dermatodea_contig8541:6500..6588Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8541 6501..6588 +
1694079874.0500512-UTR-S-dermatodea_contig8541:6500..65881694079874.0500512-UTR-S-dermatodea_contig8541:6500..6588Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8541 6501..6588 +
1622925350.4714904-UTR-S-dermatodea_contig8541:6932..69531622925350.4714904-UTR-S-dermatodea_contig8541:6932..6953Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8541 6933..6953 +
1694079874.0665479-UTR-S-dermatodea_contig8541:6932..69531694079874.0665479-UTR-S-dermatodea_contig8541:6932..6953Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8541 6933..6953 +
1622925350.50533-UTR-S-dermatodea_contig8541:7768..78641622925350.50533-UTR-S-dermatodea_contig8541:7768..7864Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8541 7769..7864 +
1694079874.1067522-UTR-S-dermatodea_contig8541:7768..78641694079874.1067522-UTR-S-dermatodea_contig8541:7768..7864Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8541 7769..7864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925350.4838662-CDS-S-dermatodea_contig8541:6953..70281622925350.4838662-CDS-S-dermatodea_contig8541:6953..7028Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8541 6954..7028 +
1694079874.0826306-CDS-S-dermatodea_contig8541:6953..70281694079874.0826306-CDS-S-dermatodea_contig8541:6953..7028Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8541 6954..7028 +
1622925350.4930902-CDS-S-dermatodea_contig8541:7666..77681622925350.4930902-CDS-S-dermatodea_contig8541:7666..7768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8541 7667..7768 +
1694079874.095874-CDS-S-dermatodea_contig8541:7666..77681694079874.095874-CDS-S-dermatodea_contig8541:7666..7768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8541 7667..7768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8541.16709.1

>prot_S-dermatodea_contig8541.16709.1 ID=prot_S-dermatodea_contig8541.16709.1|Name=mRNA_S-dermatodea_contig8541.16709.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=59bp
MADGSVERTLLVPGMLDERLKFREMVCICLPFFLTPNPAERQDLASLRAL
TESLTEED*
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mRNA from alignment at S-dermatodea_contig8541:6501..7864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8541.16709.1 ID=mRNA_S-dermatodea_contig8541.16709.1|Name=mRNA_S-dermatodea_contig8541.16709.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1364bp|location=Sequence derived from alignment at S-dermatodea_contig8541:6501..7864+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCACCGCCGACGAGGAGGAGAGGGTTAAGGTCCTGAACGAGCTTGCAA
AGACTCGGGATGTCTCGAGAGAGAGAGGGGCTTTCGAGGTGTGTAGGGTT
TCGAAGGCTGTGTGTTTGATCCCTCCAGAATGCCGCGTCTAAGATATCGA
AACTCGCCCCAATTGGTTCAACGTTCTGAAACGCTTGTCCCCCGTCATGA
TCACGGATAATGAACAAGGTTTACCGCCCACGCCACGCCAGGATGACTCG
CGAGCTCCAGGTTCGATGTGTTCAGTCATCCCCTGGCTGAGCTCGGTCGA
AGCGCTGCTCTAGGCGCGTCGCTACATACAGTACCTTGCTTGTTTCTCTC
ATCGTGACATCGATGGGAACTCTTTTCAAGGTAATGCCCTTTCCCCGCCT
TACCTCTGTTGGACGATTGCACGTCCATGTAGGTGGAGGTGTCGAGGAGG
ACTATGGCGGATGGCTCGGTCGAGAGAACCTTGTTGGTGCCGGGCATGCT
TGACGAGAGGTTAAAGTTCCGTGAAATGGTGAGTGTGGCCATCGTTGGAT
GCACTCGATGCCCGTTGTTCACATATCGCACTAATTATGTTGGCCGAAAC
GCCACGATTCGGGCCTAGTGTTTCGATGTTGACATACGGCGGGAGTTTTT
TCTGCTGTGCTGCTTGTCCTTGCTATTCGTAAGGCCATACAAGTATTCCT
GCGCGCTTTTCAGGTTTCAGATGACCAGTATATGAGTGCCCTCGTTGGAG
CGATGCGGATGGCACTTTGGGGGTACGGAGGGGGCTTTGCAAATAGTTTG
TGGAGTTTGTGGTGTGCTGAGCCGTTTCGGAGCAAAAGCTTCCGGGTTTT
TTGTTAACGCGCAGAAATCAGCTTCAGGGGGTGTATTTTACCGTCCTTGT
GGTTTTTATGACGGTACAAAAGTGGCCCTCCCGTTGTGCAGAAGCTCGGC
GACGCCACTGTATCCTGGCGGAATTCGATTGTATCTCACGGCATTCGGGT
GCCTCAGAGGTACACGCCATGCGTCAGTATGCTGCGTCAGCAACCAGTGA
AATGCCGCGGGATGTTTTGTGGATAAATCGCCAGCCTCCGTCATCTACAC
AAGCCGTTCGAAACGGAACCCGACGACGCACGTACCGCTTGGCTTCACTC
GTTACCCGTGAACCAGGTGTGCATATGCCTCCCGTTCTTCCTGACGCCGA
ACCCTGCCGAGAGGCAGGACTTGGCTTCACTCAGGGCGTTAACCGAAAGC
CTCACAGAAGAGGATTAATGCGAGGAGAGGGCAAACGAGGAAGGAGGGAA
TGCTAGGACCGATATGTTGAATGTGGAAATTGAACTGCTTCCGAGATGGC
CTGCGGTACCCTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8541:6501..7864+

>mRNA_S-dermatodea_contig8541.16709.1 ID=mRNA_S-dermatodea_contig8541.16709.1|Name=mRNA_S-dermatodea_contig8541.16709.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig8541:6501..7864+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGATGGCTCGGTCGAGAGAACCTTGTTGGTGCCGGGCATGCTTGA
CGAGAGGTTAAAGTTCCGTGAAATGATGGCGGATGGCTCGGTCGAGAGAA
CCTTGTTGGTGCCGGGCATGCTTGACGAGAGGTTAAAGTTCCGTGAAATG
GTGTGCATATGCCTCCCGTTCTTCCTGACGCCGAACCCTGCCGAGAGGCA
GGACTTGGCTTCACTCAGGGCGTTAACCGAAAGCCTCACAGAAGAGGATT
AAGTGTGCATATGCCTCCCGTTCTTCCTGACGCCGAACCCTGCCGAGAGG
CAGGACTTGGCTTCACTCAGGGCGTTAACCGAAAGCCTCACAGAAGAGGA
TTAA
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