mRNA_S-dermatodea_contig854.16708.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig854.16708.1
Unique NamemRNA_S-dermatodea_contig854.16708.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig854.16708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig854contigS-dermatodea_contig854:21157..23267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925350.4054174-CDS-S-dermatodea_contig854:21156..213591622925350.4054174-CDS-S-dermatodea_contig854:21156..21359Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig854 21157..21359 +
1694079874.0311787-CDS-S-dermatodea_contig854:21156..213591694079874.0311787-CDS-S-dermatodea_contig854:21156..21359Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig854 21157..21359 +
1622925350.419693-CDS-S-dermatodea_contig854:23192..232651622925350.419693-CDS-S-dermatodea_contig854:23192..23265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig854 23193..23265 +
1694079874.0405564-CDS-S-dermatodea_contig854:23192..232651694079874.0405564-CDS-S-dermatodea_contig854:23192..23265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig854 23193..23265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig854.16708.1prot_S-dermatodea_contig854.16708.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig854 21157..23265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig854.16708.1

>prot_S-dermatodea_contig854.16708.1 ID=prot_S-dermatodea_contig854.16708.1|Name=mRNA_S-dermatodea_contig854.16708.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=92bp
YQRLHRVSLYAGDSTVASTQEAAPLAKKARVLPRCIECGHLSHFVLHLQN
HVKSLRIAIQREGRRRRFRSCTCHGLGQGGGPSRSSCVEELS
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mRNA from alignment at S-dermatodea_contig854:21157..23267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig854.16708.1 ID=mRNA_S-dermatodea_contig854.16708.1|Name=mRNA_S-dermatodea_contig854.16708.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2111bp|location=Sequence derived from alignment at S-dermatodea_contig854:21157..23267+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACCAACGACTACATAGGGTGTCGCTCTACGCGGGAGATAGTACTGTGGC
GTCTACGCAGGAGGCTGCCCCCCTGGCGAAGAAAGCGCGAGTCCTTCCTC
GCTGTATCGAGTGCGGCCACCTTTCACACTTCGTGCTGCACCTCCAGAAC
CACGTGAAGTCGTTGCGTATAGCTATACAACGCGAGGGTAGGCGTAGGAG
ATTTACACGGGTGGTCATTCTGGTACTCTGTCAAGGGGTAAGCATTTGAC
CCTTGCGAGGCTTACAAGGGGGGGCTAACGGGGAAGGTACACCTTGCGGA
GGTGGCCTTGCAGGGCGGGGCGGGGGGTTTTTGAAAAGAAAGGAACTGCA
CTGCGGACTAGGAGGGATTCGAACCAGAGACTTCACGATGTACGATCTAC
ACTGACGTCCGAACTTACTACTGTCCTACTTACCTTACCCACTAACCTTA
ATCAAATGTCTTAACCTTCGGCTACTTATATACCCGAAGTTATTTTTAAT
ATTATCATGGATGATACGCTGTAGAATTGTACCTACTCTGTGATCGCCTA
ATTACTTCAATTAGTAACCCTTTTGGGAGTCCGTCCGTTTTTGCGCTGAA
TATCGTCCCACTAAATAGGGGTATATCGCGGTGACGGATGAACGCACAAG
TGCATGGCCGTGCATGTAAAGCATATTATATAGTACTGCAAAGTGTGTAC
ATCAAAATCGAATCAGAACAACTGCTAGAGCTCCATCAGTAGGCGGGTCC
TCTTTAGTTAGTACACGTTTATTTTTTGCGAAAGGGGCAATACATGCACG
TACATCCGGCCACCCCGCCTATTCATCGATTGATAATCCTCACGTTGCCA
ACGCATGAATGTATGTACGTAATTCCATGTGATAATGGGTGATTTTCTAC
ATGGCGAATTTATAATTTGTGCGTATATATATACAACTACTGTACGTAGT
ATTGTATAATATGCCTAACTAGTTTATGTGATTCAATGTCCTCCCATGTG
ACTCTGTGTGGTGATTATCATGGATTTTCGATTTTGTTTTTTTTCGTGAT
TATCATGGATGGGTTTTTGTTACAATCTAGGTGGTGTGTGTTTAGATTTG
GGTTGCTACTCATAGATAGGGTAGAGCTGGCTGGGTGTGTTTGCGAAAAT
ACAGTAAAATACTAAATCTCATGTCGTGGTAAGGCCTCTTTATAAACCCC
TAGAAGGCGCGTTGATTTTATCACGGTTTCACCTTATCAAATCGTCGCGG
TCGGGTGAGAACGTTAACCGGAGTTCGACCTATTTTTGATTTTATCACGG
TTTCACCTTATCAAATAGTCGCGGTCGGGTGAAAACGTTAACTGGATTTC
GACCTAATATTTATCTATTTTTTTATTAATGTATAGTGTGTCGAGGAAGC
TGTTTTTAGTACGAGAGGAATTTTTCTTCTGGCAAGGAAATTTTTCTTTT
TGGTTCGTGCTGGAAGGAACGTACACCCTACTTTTCTTCCAGCGAGGTGG
TTTGGGGCCCAAAAATAGACAAATTGCACTTTTCTTTCATACTTTTCTTC
CCAAAATATGTCCACAAAGAAAACTTTCCAGAGAAAAGTGCACGAATGGC
AACAAAAAACAAATCTCCTCCATTAGATGTGGTCTTGATATTATATTGAT
ACTGAGGGAGAAATATCGAGATATTTTTTTTGTTATGAAAATATTAACTA
AAATTTAACAACTCTGTTGTTATGCCAGCAAGGTTCACCTTCCCAAGGGG
GTGCCTTGTAGACGAAGCTGTTGTAAAATCACGGTACACAACCGTAAACA
AAGTATCGGAAACACTCGTTGAACTTAGCGTAGGTGTGTTTCTTAAGGAA
ATGCACTCACGACGCTTTCTTGAAAATATCCGAAAAACAAAAAATAAAAA
TAAGTAACAGGGGGGGGGTACACTGCCGCAATGACCCGCTACAAGGTCTA
AACACTTGTAGATACCTTGTACAAGGGTCTGGCAAGGGTCTTTCCCTTGC
CAAGGTACCTACAGGGTACTAGAAAGGCCACCCGTCTAGGTCATGCACTT
GCCATGGTCTGGGGCAGGGCGGGGGACCGAGCAGAAGCTCGTGTGTCGAG
GAGCTTTCCCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig854:21157..23267+

>mRNA_S-dermatodea_contig854.16708.1 ID=mRNA_S-dermatodea_contig854.16708.1|Name=mRNA_S-dermatodea_contig854.16708.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig854:21157..23267+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACCAACGACTACATAGGGTGTCGCTCTACGCGGGAGATAGTACTGTGGC
GTCTACGCAGGAGGCTGCCCCCCTGGCGAAGAAAGCGCGAGTCCTTCCTC
GCTGTATCGAGTGCGGCCACCTTTCACACTTCGTGCTGCACCTCCAGAAC
CACGTGAAGTCGTTGCGTATAGCTATACAACGCGAGGGTAGGCGTAGGAG
ATTTACCAACGACTACATAGGGTGTCGCTCTACGCGGGAGATAGTACTGT
GGCGTCTACGCAGGAGGCTGCCCCCCTGGCGAAGAAAGCGCGAGTCCTTC
CTCGCTGTATCGAGTGCGGCCACCTTTCACACTTCGTGCTGCACCTCCAG
AACCACGTGAAGTCGTTGCGTATAGCTATACAACGCGAGGGTAGGCGTAG
GAGATTTAGGTCATGCACTTGCCATGGTCTGGGGCAGGGCGGGGGACCGA
GCAGAAGCTCGTGTGTCGAGGAGCTTTCCTAGGTCATGCACTTGCCATGG
TCTGGGGCAGGGCGGGGGACCGAGCAGAAGCTCGTGTGTCGAGGAGCTTT
CC
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