prot_S-dermatodea_contig8534.16706.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8534.16706.1
Unique Nameprot_S-dermatodea_contig8534.16706.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length377
Homology
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 1.040e-113
Identity = 206/301 (68.44%), Postives = 230/301 (76.41%), Query Frame = 0
Query:   91 DGSNGGTVAQALASAEGNAAA-LSLLESLLASLNALLAEYGLPSAPVLCAALAVSILALTFAGKVGFGGXXXXXXXXXXXXKQRKGVVLFLGPCGSGKTAMCYRLCNDR---LAPTVTSMQPCRYACG-----------GLTPGGKA-SASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLGAQIAAGAELLYDVLTDPAMEGCRGLMLALNKSDVKEAKASRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFVRASV 375
            +G   G VAQALAS    AAA LS LESLLASL + LAEYGLPSA ++   +A++I  L   GKVG      XXXXXXXXX +RKGVVLFLGPCGSGKTAMCYRL +     L PT TSM+ CRY C            G  P   A S SLVDYPGHERLRGGV EELR ADRVVF+LDGSCL AQ+AAGAELLYDVLTDP++EGC+GLMLALNKSD+KEAKASR KTL+QKEL+KLRGT       GEEDDMPVAMALGRPGQPFSLEVDSPCEVV+A CSVA++GGL+ V +FVRAS+
Sbjct:   63 EGEIAGVVAQALASNSDKAAAVLSQLESLLASLESFLAEYGLPSASLVFPGVAIAIFLLVLLGKVGI-----XXXXXXXXXXKRKGVVLFLGPCGSGKTAMCYRLSHGGETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFVRASL 358          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 6.820e-35
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 0
Query:  221 KASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLGAQIAAGAELLYDVLTDPAMEGCRGLMLALNKSDVKEAKASRVKTLMQKELEKLRGTXXXXXXXGEEDD-MPVA-MALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 371
            K S ++ D+PGHERLRGG+R EL  +  V+F+LDG+ L +Q+  G E+LYD+LTD ++E C+GL +  +K+D+K AK  RV+  + KELE+LR T       GEED   P + + LGR GQP  L VD PC + + +CSV  +G L  V +F+
Sbjct:   22 KGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQGEEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEG-LNAVRDFI 173          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.560e-27
Identity = 72/204 (35.29%), Postives = 120/204 (58.82%), Query Frame = 0
Query:  173 RKGVVLFLGPCGSGKTAMCYRLCNDRLA-PTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAM-EGCRGLMLALNKSDVKEAKA-SRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 371
            ++ V+L LGPCGSGKTA+ +RL +  ++  TVTSM+        L     A+ S++D+PGHERLR    +    A ++VF++D + +    Q+   AE L+D+ T P + +    +++A +K+D   A A SR++ L++ EL +L+GT        +++ +P    LGR   PF+ +VD+PCEVV  S S+    G+ P+ +F+
Sbjct:   41 KRDVILLLGPCGSGKTALFHRLRDGAVSVETVTSMKETMETFP-LHDEETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHTPNGVAPLLDFI 239          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: W7U264_9STRA (Signal recognition particle receptor subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U264_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.660e-27
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 0
Query:  171 KQRKGVVLFLGPCGSGKTAMCYRLCNDRLAPTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRV---VFVLDGSCLGA-QIAAGAELLYDVLTDPAMEGCRGLMLALNKSDVKEAKA-SRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARD---GGLEPVAEFV 371
            + R   V+ LGPCG+GKTA+ ++L  + +  TVTSM        G+         LVD+PGHERLRGG +++   A +V   +FV+D +     ++   AE LYD+LT  AM+    L++A +KSD+  AKA +R+K L+  ELE+LR T       G  ++    + LGR   P +L+VD+P E+  AS +VA+    GG + + E +
Sbjct:  117 RARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESE----GILK--DKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDI 319          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.590e-26
Identity = 73/204 (35.78%), Postives = 117/204 (57.35%), Query Frame = 0
Query:  173 RKGVVLFLGPCGSGKTAMCYRLCND-RLAPTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAM-EGCRGLMLALNKSDVKEAKA-SRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 371
            ++ V+L LGPCG GKTA+ +RL +      TVTSM+        L     A+ S++D+PGHERLR  V +    A ++VFV+D + +G  AQ+   AE LYD+   P + +    L++A +K+DV  A   S +++L++ EL +L+ T        +++ +P    LGR   PF+ +VD+PCEVV  S S+     + P+ +F+
Sbjct:   41 KRDVILLLGPCGGGKTALFHRLRDGPSKVDTVTSMKE-TLETFPLFDEEAATVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHSAEAIAPLLDFI 239          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A485KDV8_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDV8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.100e-26
Identity = 73/206 (35.44%), Postives = 120/206 (58.25%), Query Frame = 0
Query:  173 RKGVVLFLGPCGSGKTAMCYRLCNDRLAPT---VTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAMEGCR-GLMLALNKSDVKEAKA-SRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 371
            ++ V+L +GPCG GKTA+ +RL  D  +PT   VTSM+    +   L     A+ S++D+PGHERLR  V +    A ++VFV+D + +   AQ+   AE L+DV T P +      +++A +KSD+  A A  R+++L++ EL +L+ T        +++ +P    LGR   PF+ +VD+PCEVV  + S+     + P+ +F+
Sbjct:   41 KRDVILLVGPCGGGKTALFHRL-RDGPSPTLETVTSMKETLESFP-LFDEDSANVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDSTTVSDPAQVRKAAEFLFDVFTHPKLNDTAIPVLIACSKSDLTTAAAPGRIQSLLEAELTQLKSTRASLEAHDDDESIP----LGRDNVPFAFDVDAPCEVVFETYSIHSAEAIAPLLDFI 240          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.080e-25
Identity = 68/204 (33.33%), Postives = 114/204 (55.88%), Query Frame = 0
Query:  173 RKGVVLFLGPCGSGKTAMCYRLCNDRL-APTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAMEGCR-GLMLALNKSD-VKEAKASRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 371
            ++ +VL +GPCG+GKTA+ +RL +      TVTSM+        L     A+ ++ D+PGHER+R    +    A +++FV+D +       I   AE LYD+ T P +      +M+A +KSD  K A ++ V++L++ EL +L+ T       GE+D+   ++ LGR   PF+ ++D+PCEV   + S+     L P+ +F+
Sbjct:   41 KRDIVLLVGPCGAGKTALFHRLRDGPTKVTTVTSMKETMEKFP-LFDEENATFNICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHGEDDE---SIPLGRDNAPFAFDIDAPCEVTFENYSIVTPEALNPLLDFI 240          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A067D7V6_SAPPC (Signal recognition particle receptor subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7V6_SAPPC)

HSP 1 Score: 106 bits (264), Expect = 4.980e-23
Identity = 68/201 (33.83%), Postives = 109/201 (54.23%), Query Frame = 0
Query:  176 VVLFLGPCGSGKTAMCYRLCNDRL-APTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLG--AQIAAGAELLYDVLTDPAMEGCR-GLMLALNKSD-VKEAKASRVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 371
            VVL +GPCG+GKTA+ +RL N      TVTSM+        L     A+ S+ D+PGHER+R    +    A +++FV+D +     + I   AE LYD+ T P +      +M+A +K+D VK A  + V++L++ EL +L+ T       G++D+   ++ LGR    F   +D+PC+V     S+     L P+ +F+
Sbjct:   44 VVLLVGPCGAGKTALFHRLRNGPTKVETVTSMKETMETFP-LFDEENATISICDFPGHERMRSTATQFYPIAKKIIFVVDATTANDASHIRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTRASLEAHGDDDE---SIPLGRDNALFEFAIDAPCDVTFEGYSIQTPDALNPLLDFI 240          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A7S3JR42_9STRA (Signal recognition particle receptor subunit beta (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR42_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.460e-23
Identity = 73/184 (39.67%), Postives = 96/184 (52.17%), Query Frame = 0
Query:  171 KQRKGVVLFLGPCGSGKTAMCYRLCNDRLAPTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLGAQIAAGAELLYDVLTDPA-MEGCRGLMLALNKSDVKEAKAS-RVKTLMQKELEKLRGTXXXXXXXGEEDDMPVAMA-LGRPGQPFSLEVDSPCEV 351
            + R   +L +GPCGSGKT + YRL +D    TV+SMQP        +P G     LVD PGH RLRG + +EL  A  ++FV D S    Q    AELLY +L+  A  +    L+   NKSD K  K + RVK +M  E+E LR T        +        A LG PGQ F+ +  SPC++
Sbjct:   28 RTRSASILIVGPCGSGKTLLFYRLVHDETVDTVSSMQPNE---SPASPDG-LPLRLVDLPGHYRLRGLLPDELECAQAIIFVFDASDALKQAKPAAELLYAILSTFADSKTGPDLLFICNKSDNKVVKTTQRVKLMMMNEIETLRKTENSIQSTADGASSSSEQAKLGIPGQFFNFDAHSPCKI 207          
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Match: A0A8K1FBH7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBH7_PYTOL)

HSP 1 Score: 103 bits (256), Expect = 8.680e-22
Identity = 78/205 (38.05%), Postives = 105/205 (51.22%), Query Frame = 0
Query:  173 RKGVVLFLGPCGSGKTAMCYRLCNDRLAPTVTSMQPC--RYACGGL--TPGGKASASLVDYPGHERLRGGVREELRRADRVVFVLDGSCLGAQIAAGAELLYDVLTDPAMEGCRGLML-ALNKSDVKEAKASRV-KTLMQKELEKLRGTXXXXXXXGEEDDMPVAMALGRPGQPFSLEVDSPCEVVIASCSVARDGGLEPVAEFV 371
            +K + + LGP G+GKTA+ ++L + R   TVTSM     ++A      T    A  S+VDYPGHERLR  V +       VVFV+D +         AE LYD+ ++         ML A NK+D+K A    V K  ++KEL KL+ T       GEED   V +  GR G  F   VD+PCEV     S  + G ++ VA FV
Sbjct:   53 KKKMTMLLGPRGAGKTALFHQLRDGRFVETVTSMTELEGKFAVHDRYNTINFGAHLSIVDYPGHERLRSRVADYYPVTGCVVFVVDAA--DQSFRKAAEYLYDIFSNAKFNDLAPRMLIACNKTDIKSAATVEVVKEALEKELTKLKKTRSSLETEGEEDTSVVPV--GRDGVAFEFAVDAPCEVTFVKSSF-KAGDVDDVATFV 252          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8534.16706.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF4_ECTSI1.040e-11368.44Signal recognition particle receptor subunit beta ... [more]
A0A835YTM3_9STRA6.820e-3546.41Signal recognition particle receptor subunit beta ... [more]
A0A6G0XMT9_9STRA3.560e-2735.29Signal recognition particle receptor subunit beta ... [more]
W7U264_9STRA4.660e-2737.32Signal recognition particle receptor subunit beta ... [more]
A0A024TLZ7_9STRA3.590e-2635.78Signal recognition particle receptor subunit beta ... [more]
A0A485KDV8_9STRA5.100e-2635.44Signal recognition particle receptor subunit beta ... [more]
A0A1V9ZHQ0_9STRA7.080e-2533.33Signal recognition particle receptor subunit beta ... [more]
A0A067D7V6_SAPPC4.980e-2333.83Signal recognition particle receptor subunit beta ... [more]
A0A7S3JR42_9STRA9.460e-2339.67Signal recognition particle receptor subunit beta ... [more]
A0A8K1FBH7_PYTOL8.680e-2238.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 168..373
e-value: 8.9E-42
score: 145.0
NoneNo IPR availablePANTHERPTHR11485TRANSFERRINcoord: 140..362
IPR019009Signal recognition particle receptor, beta subunitPFAMPF09439SRPRBcoord: 174..341
e-value: 5.7E-25
score: 87.8
IPR019009Signal recognition particle receptor, beta subunitPANTHERPTHR11485:SF34SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT BETAcoord: 140..362
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 177..317

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8534contigS-dermatodea_contig8534:6416..7546 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8534.16706.1mRNA_S-dermatodea_contig8534.16706.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8534 6416..7546 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8534.16706.1 ID=prot_S-dermatodea_contig8534.16706.1|Name=mRNA_S-dermatodea_contig8534.16706.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=377bp
MLETTTIYVAPASRQRHHGSGGGGGGGGGTVSKADFWMLRLAVALASSTL
AIATPSSAEEQLHADSSSSSSSIGGGDPVVLAAAAHVNSADGSNGGTVAQ
ALASAEGNAAALSLLESLLASLNALLAEYGLPSAPVLCAALAVSILALTF
AGKVGFGGGGGGGVGGGSAKKQRKGVVLFLGPCGSGKTAMCYRLCNDRLA
PTVTSMQPCRYACGGLTPGGKASASLVDYPGHERLRGGVREELRRADRVV
FVLDGSCLGAQIAAGAELLYDVLTDPAMEGCRGLMLALNKSDVKEAKASR
VKTLMQKELEKLRGTRGTLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCE
VVIASCSVARDGGLEPVAEFVRASVR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019009SRP_receptor_beta_su
IPR027417P-loop_NTPase