mRNA_S-dermatodea_contig85318.16703.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85318.16703.1
Unique NamemRNA_S-dermatodea_contig85318.16703.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig85318.16703.1 vs. uniprot
Match: A0A6H5KYQ2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.210e-19
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   73 GTSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGILSGTIVDSQGVKQAVGLPIVVVPGLGRNLFSV 336
            G+S+ +LVDSGA+++Y D  L PG+R  + D   L++P  I TAG H L GV TG+L GT+ D  G  + V   +V+VPGLG NLFSV
Sbjct:  415 GSSILMLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSV 502
[Close]
BLAST of mRNA_S-dermatodea_contig85318.16703.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.260e-19
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   73 GTSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGILSGTIVDSQGVKQAVGLPIVVVPGLGRNLFSV 336
            G+S+ +LVDSGA+++Y D  L PG+R  + D   L++P  I TAG H L GV TG+L GT+ D  G  + V   +V+VPGLG NLFSV
Sbjct:  415 GSSILMLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSV 502
[Close]
BLAST of mRNA_S-dermatodea_contig85318.16703.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.280e-19
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   73 GTSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGILSGTIVDSQGVKQAVGLPIVVVPGLGRNLFSV 336
            G+S+ +LVDSGA+++Y D  L PG+R  + D   L++P  I TAG H L GV TG+L GT+ D  G  + V   +++VPGLG NLFSV
Sbjct:  415 GSSILMLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSV 502
[Close]
BLAST of mRNA_S-dermatodea_contig85318.16703.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.820e-19
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   73 GTSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGILSGTIVDSQGVKQAVGLPIVVVPGLGRNLFSV 336
            G+S+ +L+DSGA+++Y D  L PG+R  + D   L++P  I TAG H L GV TG+L GT+ D  G  + V   +V+VPGLG NLFSV
Sbjct:  415 GSSILMLMDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSV 502
[Close]
BLAST of mRNA_S-dermatodea_contig85318.16703.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.050e-18
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:   73 GTSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGILSGTIVDSQGVKQAVGLPIVVVPGLGRNLFSV 336
            G+S+ ++VDSGA+++Y D  L PGLR  + D   L+VP TI  AG H LKGV TG + G + D  G  + V   +++VPGLG NLFSV
Sbjct:  594 GSSIRMVVDSGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSV 681
[Close]
BLAST of mRNA_S-dermatodea_contig85318.16703.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.460e-18
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:   73 GTSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGILSGTIVDSQGVKQAVGLPIVVVPGLGRNLFSV 336
            G+S+ +L DSGA+++Y D  L PG+R  + D   L++P  I TAG H L GV TG+L GT+ D  G  + V   +V+VPGLG NLFSV
Sbjct:  320 GSSILMLEDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSV 407
[Close]
BLAST of mRNA_S-dermatodea_contig85318.16703.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.460e-18
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:   73 GTSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGILSGTIVDSQGVKQAVGLPIVVVPGLGRNLFSV 336
            G+S+ ++VDSGA+++Y    L PGLR  + D    +VP TI  AG H LKGVATG + G + D  G  Q V   +++VPGLG NLFSV
Sbjct:  155 GSSVRIVVDSGATDNYLGPGLTPGLRAHMRDVEHFRVPHTIVAAGRHVLKGVATGTIFGAVTDDNGNDQLVSFRVILVPGLGTNLFSV 242
[Close]
BLAST of mRNA_S-dermatodea_contig85318.16703.1 vs. uniprot
Match: A0A6H5JWN9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.530e-18
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   88 VLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGILSGTIVDSQGVKQAVGLPIVVVPGLGRNLFSV 336
            ++VDSGA+++Y D  L PGLR  + D   L+VP TI  AG H LKGVATG + G + D  G  + V   +++VPGLG NLFSV
Sbjct:  236 MVVDSGATDNYLDPGLTPGLRTHMRDVEYLRVPHTIVAAGQHVLKGVATGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSV 318
[Close]
BLAST of mRNA_S-dermatodea_contig85318.16703.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.700e-18
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:   73 GTSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGILSGTIVDSQGVKQAVGLPIVVVPGLGRNLFSV 336
            G+S+ ++VDSGA+++Y D  L PGLR  + D   L+VP TI  AG H LKGV TG + G + D  G  + V L +++V GLG NLFSV
Sbjct:  415 GSSIRMVVDSGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSLRVILVSGLGTNLFSV 502
[Close]
BLAST of mRNA_S-dermatodea_contig85318.16703.1 vs. uniprot
Match: A0A6H5JU86_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU86_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 6.650e-18
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:   73 GTSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGILSGTIVDSQGVKQAVGLPIVVVPGLGRNLFSV 336
            G+S+ +++DS A++ Y +  LAPGLR  + D   L+VP TI  AG+H LKG ATG + G + D  G  Q V   +++VPGLG NLFSV
Sbjct:  449 GSSIRMVIDSVAADSYLNPELAPGLRAHMRDVEHLRVPHTIVAAGHHVLKGAATGTIFGAVTDDNGNDQLVSFRVILVPGLGTNLFSV 536
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85318.16703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYQ2_9PHAE2.210e-1950.00CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KJN3_9PHAE2.260e-1950.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE4.280e-1948.86Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE5.820e-1948.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVF6_9PHAE1.050e-1848.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYB5_9PHAE1.460e-1848.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL30_9PHAE1.460e-1848.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWN9_9PHAE3.530e-1850.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC00_9PHAE3.700e-1848.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU86_9PHAE6.650e-1847.73CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85318contigS-dermatodea_contig85318:170..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925350.0970693-UTR-S-dermatodea_contig85318:169..1961622925350.0970693-UTR-S-dermatodea_contig85318:169..196Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85318 170..196 +
1694079873.834245-UTR-S-dermatodea_contig85318:169..1961694079873.834245-UTR-S-dermatodea_contig85318:169..196Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85318 170..196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925350.1125195-CDS-S-dermatodea_contig85318:196..5081622925350.1125195-CDS-S-dermatodea_contig85318:196..508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85318 197..508 +
1694079873.8447719-CDS-S-dermatodea_contig85318:196..5081694079873.8447719-CDS-S-dermatodea_contig85318:196..508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85318 197..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85318.16703.1prot_S-dermatodea_contig85318.16703.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85318 197..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85318.16703.1

>prot_S-dermatodea_contig85318.16703.1 ID=prot_S-dermatodea_contig85318.16703.1|Name=mRNA_S-dermatodea_contig85318.16703.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MAGIKNVVNIHSIITGTSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVL
QVPRTITTAGNHELKGVATGILSGTIVDSQGVKQAVGLPIVVVPGLGRNL
FSVP
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mRNA from alignment at S-dermatodea_contig85318:170..508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85318.16703.1 ID=mRNA_S-dermatodea_contig85318.16703.1|Name=mRNA_S-dermatodea_contig85318.16703.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at S-dermatodea_contig85318:170..508+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGAGCAGATAGAGCACACAGCTCTGATGGCGGGAATCAAGAACGTCGT
CAACATCCACTCCATCATCACCGGCACTTCACTGCCGGTACTTGTGGACA
GCGGGGCGTCAGAGCACTACTTTGACGATCTGCTGGCTCCTGGACTCCGG
GACAAGTTGTCAGACTACACAGTCCTACAGGTTCCACGAACGATCACCAC
TGCGGGCAACCACGAGCTAAAGGGCGTCGCCACCGGCATCCTCAGCGGAA
CCATCGTCGATTCGCAGGGTGTGAAGCAGGCCGTTGGCCTCCCGATTGTA
GTTGTGCCTGGACTTGGGCGCAATCTATTCTCGGTCCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig85318:170..508+

>mRNA_S-dermatodea_contig85318.16703.1 ID=mRNA_S-dermatodea_contig85318.16703.1|Name=mRNA_S-dermatodea_contig85318.16703.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig85318:170..508+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGGAATCAAGAACGTCGTCAACATCCACTCCATCATCACCGGCAC
TTCACTGCCGGTACTTGTGGACAGCGGGGCGTCAGAGCACTACTTTGACG
ATCTGCTGGCTCCTGGACTCCGGGACAAGTTGTCAGACTACACAGTCCTA
CAGGTTCCACGAACGATCACCACTGCGGGCAACCACGAGCTAAAGGGCGT
CGCCACCGGCATCCTCAGCGGAACCATCGTCGATTCGCAGGGTGTGAAGC
AGGCCGTTGGCCTCCCGATTGTAGTTGTGCCTGGACTTGGGCGCAATCTA
TTCTCGGTCCCGATGGCGGGAATCAAGAACGTCGTCAACATCCACTCCAT
CATCACCGGCACTTCACTGCCGGTACTTGTGGACAGCGGGGCGTCAGAGC
ACTACTTTGACGATCTGCTGGCTCCTGGACTCCGGGACAAGTTGTCAGAC
TACACAGTCCTACAGGTTCCACGAACGATCACCACTGCGGGCAACCACGA
GCTAAAGGGCGTCGCCACCGGCATCCTCAGCGGAACCATCGTCGATTCGC
AGGGTGTGAAGCAGGCCGTTGGCCTCCCGATTGTAGTTGTGCCTGGACTT
GGGCGCAATCTATTCTCGGTCCCG
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