mRNA_S-dermatodea_contig8531.16702.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8531.16702.1
Unique NamemRNA_S-dermatodea_contig8531.16702.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8531.16702.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.360e-15
Identity = 45/122 (36.89%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    1 KKWFASTKSLQLASLQFCVVCREKVTVHLQVKVATPRRLWASDEAYKSTSRGSHAQGQTSKRLPALGVRGITWELSTSPQAVFKDLPPIGRLECPRGGDSLNRGVRRLSWPRHLTSVVFGHD 366
            K W+ STK LQLASL FC+ CR   TVHL V    PRRL AS +A        H +     R+P L  R +TW + T+ + +   +  +  +E    GD+    +  + WP HL ++ F HD
Sbjct:   66 KSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPP-----HPKRLCWTRVPRLRSRRVTWNMPTAAK-LRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHD 181          
BLAST of mRNA_S-dermatodea_contig8531.16702.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.820e-12
Identity = 44/114 (38.60%), Postives = 60/114 (52.63%), Query Frame = 1
Query:    1 KKWFASTKSLQLASLQFCVVCREKVTVHLQVKVATPRRLWASDEAYKSTSRGSHAQGQTSKRLPALGVRGITWELSTSPQAVFKDLPPIGRLECPRGGDSLNRGVRRLSWPRHL 342
            K WFASTK LQLASLQ C  CR+   +HL+V  +TP RL A  +   S S GS    +   R+P L  R ++W+L TS   +   +  +   +     DSLN  +  + WP  L
Sbjct:   47 KHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPAD---SPSDGS----EEGTRVPRLRAREVSWDL-TSADRLSSSIYALASAQVFTFSDSLNAVLDAVVWPTSL 152          
BLAST of mRNA_S-dermatodea_contig8531.16702.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.070e-11
Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 1
Query:    1 KKWFASTKSLQLASLQFCVVCREKVTVHLQVKVATPRRLWASDEAYKSTSRGSHAQGQTSKRLPALGVRGITWELSTSPQA-----VFKDLPPIGRLECPRGGDSLNRGVRRLSWPRHLTSVVF 357
            K+W+ STK LQLASL+FC+ CR+   + L+V   TPR L A+ +A        H +     R+P L  R + W + T+ +        KD      + C R G   N  +  + WP  L  ++F
Sbjct:   32 KRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPP-----HTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKD------VNCLRFGGVFNGSLEAVVWPPPLKQIIF 144          
BLAST of mRNA_S-dermatodea_contig8531.16702.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.670e-10
Identity = 40/119 (33.61%), Postives = 60/119 (50.42%), Query Frame = 1
Query:    1 KKWFASTKSLQLASLQFCVVCREKVTVHLQVKVATPRRLWASDEAYKSTSRGSHAQGQTSKRLPALGVRGITWELSTSP--QAVFKDLPPIGRLECPRGGDSLNRGVRRLSWPRHLTSV 351
            K W+ STK  QLASL+FC+ CR   T+ L+V   TPRRL A+ +A        H +     R+P L  R +TW++ T+   +     +     LE  R  +     +  ++WPR L +V
Sbjct:   27 KSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPP-----HPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFED---SLEAVAWPRRLKTV 137          
BLAST of mRNA_S-dermatodea_contig8531.16702.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.300e-8
Identity = 41/124 (33.06%), Postives = 60/124 (48.39%), Query Frame = 1
Query:    1 KKWFASTKSLQLASLQFCVVCREKVTVHLQVKVATPRRLWASDEAYKSTSRGSHAQGQTSKRLPALGVRGITWELSTSPQAVFKDLPPIGR--LECPRGGDSLNRGVR----RLSWPRHLTSVV 354
            + W+ STK LQLASL+FCV CR   T+HL+V    PRRL A  +A        H +     R+P L  R +TW +    +A    +P      ++C + G++    +R    R  W R   S +
Sbjct:  128 ESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPP-----HPELLCRTRVPRLRARRVTWGMR---KAAELSIPIFAMTDVDCLKFGETSLEALRLWHGRDGWKRSSFSFL 243          
BLAST of mRNA_S-dermatodea_contig8531.16702.1 vs. uniprot
Match: A0A6H5K4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.030e-8
Identity = 39/123 (31.71%), Postives = 63/123 (51.22%), Query Frame = 1
Query:    1 KKWFASTKSLQLASLQFCVVCREKVTVHLQVKVATPRRLWAS---DEAYKSTSRGSHAQGQTSKRLPALGVRGITWELSTSPQAVFKDLPPIGRLECPRGGDSLNRGVRRLSWPRHLTSVVFG 360
            + W+ ST  LQLASL FC+ CR+ VT+ L V  + PRRL A    +EA  + + G    G++  R+P    R +TW   +  + +   +  +  ++        NR +  ++WPR L  + FG
Sbjct:   46 ESWYVSTTQLQLASLPFCLACRDSVTLCLTVDDSIPRRLLADVGGNEAVVAPA-GPCQCGRS--RVPRFHAREVTWHRQSCVE-LSASIYALAEVDFFILDGGFNRAIGAVAWPRKLRRLEFG 164          
BLAST of mRNA_S-dermatodea_contig8531.16702.1 vs. uniprot
Match: D7FUL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL9_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.380e-6
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 1
Query:    1 KKWFASTKSLQLASLQFCVVCREKVTVHLQVKVATPRRLWASDEAYKSTSRGSHAQGQTSKRLPALGVR 207
            K WFASTK LQLASLQ C  CR+   +HL+V  +TP RL+A  ++    S       +   R+P L  R
Sbjct:   47 KHWFASTKELQLASLQLCEACRDAAALHLRVDTSTPLRLFAPADSPSDDS-------EEDTRVPRLRAR 108          
BLAST of mRNA_S-dermatodea_contig8531.16702.1 vs. uniprot
Match: A0A6H5JF56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF56_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.140e-5
Identity = 30/76 (39.47%), Postives = 37/76 (48.68%), Query Frame = 1
Query:    1 KKWFASTKSLQLASLQFCVVCREKVTVHLQVKVATPRRLWASDEAYKSTSRGSHAQGQTSKRLPALGVRGITWELS 228
            KKW+ S   LQLASL FCV CR  +   L V   TP RLW                  T  R+PA+ VR + W+L+
Sbjct:   51 KKWYTSIAGLQLASLAFCVACRNVLAPCLTVDKGTPLRLWCGPCTTPLEVL------TTVTRVPAIRVREVVWKLT 120          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8531.16702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JRF9_9PHAE8.360e-1536.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0U4_9PHAE6.820e-1238.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRK5_9PHAE4.070e-1132.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE2.670e-1033.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI2.300e-833.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4H1_9PHAE4.030e-831.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL9_ECTSI1.380e-643.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF56_9PHAE7.140e-539.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8531contigS-dermatodea_contig8531:1909..2441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size533
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925350.0574014-CDS-S-dermatodea_contig8531:1908..24391622925350.0574014-CDS-S-dermatodea_contig8531:1908..2439Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8531 1909..2439 +
1694079873.822845-CDS-S-dermatodea_contig8531:1908..24391694079873.822845-CDS-S-dermatodea_contig8531:1908..2439Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8531 1909..2439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8531.16702.1prot_S-dermatodea_contig8531.16702.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8531 1909..2439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8531.16702.1

>prot_S-dermatodea_contig8531.16702.1 ID=prot_S-dermatodea_contig8531.16702.1|Name=mRNA_S-dermatodea_contig8531.16702.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=177bp
KKWFASTKSLQLASLQFCVVCREKVTVHLQVKVATPRRLWASDEAYKSTS
RGSHAQGQTSKRLPALGVRGITWELSTSPQAVFKDLPPIGRLECPRGGDS
LNRGVRRLSWPRHLTSVVFGHDFNQPVDGLSWPGCLKHLTFGHMFNQVID
KVVWPSALQQLAFGKCFNQTVDKVAWP
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mRNA from alignment at S-dermatodea_contig8531:1909..2441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8531.16702.1 ID=mRNA_S-dermatodea_contig8531.16702.1|Name=mRNA_S-dermatodea_contig8531.16702.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=533bp|location=Sequence derived from alignment at S-dermatodea_contig8531:1909..2441+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAAAATGGTTCGCATCTACGAAAAGCTTGCAGCTTGCGTCCTTGCAGTT TTGCGTGGTGTGCCGAGAAAAGGTCACCGTGCATCTACAGGTTAAGGTCG CCACGCCACGCCGCCTATGGGCTTCCGATGAAGCTTACAAGAGCACCTCC CGTGGGTCACATGCGCAAGGACAGACTTCCAAACGCTTACCGGCTTTGGG GGTGCGAGGCATAACGTGGGAACTGTCCACATCTCCGCAGGCCGTATTCA AAGACCTTCCGCCCATAGGAAGATTGGAGTGCCCCCGCGGGGGCGATTCG TTGAACCGCGGGGTCCGGAGGCTATCGTGGCCAAGGCACCTGACATCGGT GGTGTTCGGGCACGACTTCAACCAGCCTGTGGATGGGCTGAGTTGGCCTG GCTGTCTCAAACACCTAACGTTCGGGCATATGTTCAATCAGGTGATCGAC AAGGTCGTTTGGCCGTCCGCACTCCAACAGCTCGCGTTCGGGAAGTGCTT CAACCAGACGGTTGACAAGGTCGCGTGGCCCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8531:1909..2441+

>mRNA_S-dermatodea_contig8531.16702.1 ID=mRNA_S-dermatodea_contig8531.16702.1|Name=mRNA_S-dermatodea_contig8531.16702.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at S-dermatodea_contig8531:1909..2441+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAAAATGGTTCGCATCTACGAAAAGCTTGCAGCTTGCGTCCTTGCAGTT
TTGCGTGGTGTGCCGAGAAAAGGTCACCGTGCATCTACAGGTTAAGGTCG
CCACGCCACGCCGCCTATGGGCTTCCGATGAAGCTTACAAGAGCACCTCC
CGTGGGTCACATGCGCAAGGACAGACTTCCAAACGCTTACCGGCTTTGGG
GGTGCGAGGCATAACGTGGGAACTGTCCACATCTCCGCAGGCCGTATTCA
AAGACCTTCCGCCCATAGGAAGATTGGAGTGCCCCCGCGGGGGCGATTCG
TTGAACCGCGGGGTCCGGAGGCTATCGTGGCCAAGGCACCTGACATCGGT
GGTGTTCGGGCACGACTTCAACCAGCCTGTGGATGGGCTGAGTTGGCCTG
GCTGTCTCAAACACCTAACGTTCGGGCATATGTTCAATCAGGTGATCGAC
AAGGTCGTTTGGCCGTCCGCACTCCAACAGCTCGCGTTCGGGAAGTGCTT
CAACCAGACGGTTGACAAGGTCGCGTGGCCCAAAAAATGGTTCGCATCTA
CGAAAAGCTTGCAGCTTGCGTCCTTGCAGTTTTGCGTGGTGTGCCGAGAA
AAGGTCACCGTGCATCTACAGGTTAAGGTCGCCACGCCACGCCGCCTATG
GGCTTCCGATGAAGCTTACAAGAGCACCTCCCGTGGGTCACATGCGCAAG
GACAGACTTCCAAACGCTTACCGGCTTTGGGGGTGCGAGGCATAACGTGG
GAACTGTCCACATCTCCGCAGGCCGTATTCAAAGACCTTCCGCCCATAGG
AAGATTGGAGTGCCCCCGCGGGGGCGATTCGTTGAACCGCGGGGTCCGGA
GGCTATCGTGGCCAAGGCACCTGACATCGGTGGTGTTCGGGCACGACTTC
AACCAGCCTGTGGATGGGCTGAGTTGGCCTGGCTGTCTCAAACACCTAAC
GTTCGGGCATATGTTCAATCAGGTGATCGACAAGGTCGTTTGGCCGTCCG
CACTCCAACAGCTCGCGTTCGGGAAGTGCTTCAACCAGACGGTTGACAAG
GTCGCGTGGCCC
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