mRNA_S-dermatodea_contig853.16699.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig853.16699.1
Unique NamemRNA_S-dermatodea_contig853.16699.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: D7G5N9_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5N9_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 9.270e-69
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 3 
Query:   48 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 371
            MLFCPTDG+LLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKI LKKKAVDDIMGG+DAWANVDKTQ TCPFCNNKEAFFLMVQLRSADEPMTCFYKCT CKQRWKE
Sbjct:    1 MLFCPTDGSLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIALKKKAVDDIMGGDDAWANVDKTQTTCPFCNNKEAFFLMVQLRSADEPMTCFYKCTNCKQRWKE 108
[Close]
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: D7G5P0_ECTSI (SHSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P0_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 3.360e-49
Identity = 134/296 (45.27%), Postives = 181/296 (61.15%), Query Frame = -3 
Query: 1738 AVAILLLGALEGA----ESHGGYRNWRGGRVGSNRWPSAFLSSDLDGGAFRPFQG-QARG------GGALVDIFQDVLGDITKVARELSAGTS-TNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTAD----HPSAAGESSASP------------------DSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVAPEPPAQPIEIPIDPPAESENHKAT------RGASKASGGVDSGDKVSVDGSKRSADTHISLS 2505
            A+  LLLG  +G      +HGG+    G R+   + P+   +  +D GAFRPF+  Q RG       G L+D+FQDV+G+I KVA ELS  T+   +P +EVLETPDA  + VDLPGCKK DVDAQ+SEDS  KTL ITAVRKK R AD     PS+  ++S S                   ++A+ +  P+   F+EESF+LSF++GE IDVS +RG LEDGVLTLVLP++APEPPA+PI+IPID  + + ++         R A+ ++GG +     S+  +   ADTHISL+
Sbjct:   10 ALLALLLGTQQGECHRYRTHGGHXXXXGRRL--FQLPTVVNNEIVDTGAFRPFRHVQPRGRPHVSSAGPLMDVFQDVMGEIKKVACELSDPTTEARSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDSGTKTLTITAVRKKPRQADGDARSPSSPPDTSGSXXXXXXXXXXXXXXXXAPHEAAKDTPEPSLSSFSEESFKLSFRVGEDIDVSVIRGGLEDGVLTLVLPKLAPEPPAEPIDIPIDFTSSTRSNTGXXXXXRERHAAASTGGKEE----SIGDAGGDADTHISLA 299
[Close]
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A836CB68_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB68_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.600e-37
Identity = 64/112 (57.14%), Postives = 77/112 (68.75%), Query Frame = 3 
Query:   48 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNN----KEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 371
            MLFCPT GNLLMVE+  +G  RF CQTCPY+HP+    K+T+ + L++K VDD++GG DAW NVDK    C  C +    KEA+F   QLRSADEPMT FYKC  C  RW E
Sbjct:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112
[Close]
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A024UTD8_9STRA (DNA-directed RNA polymerase subunit n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UTD8_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.940e-35
Identity = 60/108 (55.56%), Postives = 81/108 (75.00%), Query Frame = 3 
Query:   48 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 371
            M FCPT GNLLMVE    G  RFCCQTCPYI+ +  + K+  K+ L++K VDD++GG++AW NVD+T   CPFC + +A+F+ +Q+RSADEP T FYKCT CK++W +
Sbjct:    1 MHFCPTCGNLLMVEPDSDGM-RFCCQTCPYIYKI--NQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWND 105
[Close]
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: W7TK62_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK62_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.260e-34
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 3 
Query:   48 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRW 365
            M FCP   NLL+VE G Q + RFCCQTCPYI  +  + KI++ + LK+K VDD++GGEDAWA  D+T   CPFC++ EAFF+ +Q+RSADEPMT FY+CT C  RW
Sbjct:    1 MKFCPICSNLLLVELGEQNF-RFCCQTCPYISVI--TKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRW 103
[Close]
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A058ZBP1_FONAL (DNA-directed RNA polymerase subunit n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZBP1_FONAL)

HSP 1 Score: 136 bits (342), Expect = 4.780e-34
Identity = 59/110 (53.64%), Postives = 82/110 (74.55%), Query Frame = 3 
Query:   48 MLFCPTDGNLLMVESGPQ--GWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 371
            MLFCP  GN+L+V S     G  +F CQTCPY+H ++   KI+ +I+LK+K VDD++GGE +W NVD T+  CP C+N+ A+F+ +Q+RSADEPM+ FYKCTKC  +W+E
Sbjct:    1 MLFCPGCGNVLLVNSDASDIGDFQFACQTCPYVHSIKR--KISSRIILKRKEVDDVLGGEGSWDNVDSTEVPCPKCDNRRAYFMQIQIRSADEPMSTFYKCTKCAAQWRE 108
[Close]
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A1Y1IMC9_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMC9_KLENI)

HSP 1 Score: 134 bits (337), Expect = 2.260e-33
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 3 
Query:   48 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTK--CKQRWKE 371
            M FCPT  NLL+VE G  G  R+ CQTCPY++ ++   K+  K+ L +K VDD++GGE+AW NVDKT+ATCP C   EA+F+ +Q+RSADEPM+ FYKC K  C  +W+E
Sbjct:    1 MDFCPTCANLLLVEGGNMGELRYFCQTCPYVYTIKA--KMKNKLPLARKEVDDVLGGEEAWRNVDKTEATCPKCRYGEAYFMQIQIRSADEPMSTFYKCCKPECSHQWRE 108
[Close]
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A7S0RJ62_9CHLO (DNA-directed RNA polymerase subunit n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RJ62_9CHLO)

HSP 1 Score: 134 bits (336), Expect = 2.900e-33
Identity = 59/108 (54.63%), Postives = 80/108 (74.07%), Query Frame = 3 
Query:   48 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 371
            M FCPT G LLMVE       R+ CQTCPY++ ++   KI ++ VL+ K VDD++GG++AWANVD+T+ +CP C++ +A+F+ VQ RSADEPMT FYKC KC  RWK+
Sbjct:    2 MTFCPTCGTLLMVEYCELTRLRYACQTCPYVYMIDR--KIVKEHVLETKEVDDVLGGDEAWANVDRTEVSCPKCDHGQAYFMQVQTRSADEPMTIFYKCCKCANRWKD 107
[Close]
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A077ZVQ1_STYLE (DNA-directed RNA polymerase subunit n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A077ZVQ1_STYLE)

HSP 1 Score: 132 bits (333), Expect = 7.150e-33
Identity = 57/108 (52.78%), Postives = 81/108 (75.00%), Query Frame = 3 
Query:   48 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 371
            MLFCPT  NLL++E     + RF C+TCPY+  +E +    +K+ L++K VDD++GG++AW NVD+ +A CP CNNK A+F+ +Q+RSADEPMT FYKCT+C  +W+E
Sbjct:    1 MLFCPTCANLLLIEKTHSDF-RFFCKTCPYVFVVEQN--FEKKMQLERKEVDDVLGGKEAWENVDQIEAQCPKCNNKRAYFMQIQIRSADEPMTTFYKCTQCSYQWRE 105
[Close]
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A6G0XP80_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP80_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.130e-32
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = 3 
Query:   48 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQ---------------ATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 371
            M FCPT GNLLMVE    G  RFCCQTCPYI+ +E   K+ +K+ L++K VDD++GG+ AW NVD+T+               A CPFC + +A+F+ +Q+RSADEP T FYKC  CK++W +
Sbjct:    1 MHFCPTCGNLLMVEPDTDGM-RFCCQTCPYIYKIE--SKVQKKVPLQRKQVDDVLGGDQAWENVDQTESLTSFVALYLMFSSVARCPFCQHDKAYFMQIQIRSADEPSTTFYKCVACKKQWND 120
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5N9_ECTSI9.270e-6995.37DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
D7G5P0_ECTSI3.360e-4945.27SHSP domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CB68_9STRA5.600e-3757.14DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A024UTD8_9STRA1.940e-3555.56DNA-directed RNA polymerase subunit n=8 Tax=Saprol... [more]
W7TK62_9STRA1.260e-3458.49DNA-directed RNA polymerase subunit n=2 Tax=Nannoc... [more]
A0A058ZBP1_FONAL4.780e-3453.64DNA-directed RNA polymerase subunit n=1 Tax=Fontic... [more]
A0A1Y1IMC9_KLENI2.260e-3354.55DNA-directed RNA polymerase subunit n=1 Tax=Klebso... [more]
A0A7S0RJ62_9CHLO2.900e-3354.63DNA-directed RNA polymerase subunit n=1 Tax=Pyrami... [more]
A0A077ZVQ1_STYLE7.150e-3352.78DNA-directed RNA polymerase subunit n=2 Tax=Oxytri... [more]
A0A6G0XP80_9STRA1.130e-3249.59DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig853contigS-dermatodea_contig853:10231..15129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.6
Seed ortholog evalue2.2e-59
Seed eggNOG ortholog2880.D7G5N9
Preferred namePOLR3K
KEGG rclassRC02795
KEGG koko:K02326,ko:K03019
KEGG ReactionR00375,R00376,R00377,R00378,R00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko03030,ko03410,ko03420,ko04623,ko05166,ko05169,map00230,map00240,map01100,map03020,map03030,map03410,map03420,map04623,map05166,map05169
KEGG ModuleM00181,M00263
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005667,GO:0005669,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006366,GO:0006368,GO:0006383,GO:0006384,GO:0006386,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031123,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042779,GO:0042780,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090575,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen
EggNOG OGsCOG1594@1,KOG2906@2759
EC2.7.7.7
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, TFIIS-type
Ec32 orthologEc-12_008560.1
Exons4
Model size2702
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig853.16699.1prot_S-dermatodea_contig853.16699.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig853 13686..15082 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925349.8289154-UTR-S-dermatodea_contig853:10230..106421622925349.8289154-UTR-S-dermatodea_contig853:10230..10642Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig853 10231..10642 -
1694079873.6612177-UTR-S-dermatodea_contig853:10230..106421694079873.6612177-UTR-S-dermatodea_contig853:10230..10642Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig853 10231..10642 -
1622925349.8437436-UTR-S-dermatodea_contig853:11769..136851622925349.8437436-UTR-S-dermatodea_contig853:11769..13685Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig853 11770..13685 -
1694079873.6761122-UTR-S-dermatodea_contig853:11769..136851694079873.6761122-UTR-S-dermatodea_contig853:11769..13685Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig853 11770..13685 -
1622925349.8892918-UTR-S-dermatodea_contig853:15082..151291622925349.8892918-UTR-S-dermatodea_contig853:15082..15129Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig853 15083..15129 -
1694079873.7363188-UTR-S-dermatodea_contig853:15082..151291694079873.7363188-UTR-S-dermatodea_contig853:15082..15129Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig853 15083..15129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925349.8574305-CDS-S-dermatodea_contig853:13685..138081622925349.8574305-CDS-S-dermatodea_contig853:13685..13808Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig853 13686..13808 -
1694079873.6959915-CDS-S-dermatodea_contig853:13685..138081694079873.6959915-CDS-S-dermatodea_contig853:13685..13808Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig853 13686..13808 -
1622925349.8675992-CDS-S-dermatodea_contig853:14418..144931622925349.8675992-CDS-S-dermatodea_contig853:14418..14493Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig853 14419..14493 -
1694079873.716102-CDS-S-dermatodea_contig853:14418..144931694079873.716102-CDS-S-dermatodea_contig853:14418..14493Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig853 14419..14493 -
1622925349.877932-CDS-S-dermatodea_contig853:14953..150821622925349.877932-CDS-S-dermatodea_contig853:14953..15082Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig853 14954..15082 -
1694079873.7272422-CDS-S-dermatodea_contig853:14953..150821694079873.7272422-CDS-S-dermatodea_contig853:14953..15082Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig853 14954..15082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig853.16699.1

>prot_S-dermatodea_contig853.16699.1 ID=prot_S-dermatodea_contig853.16699.1|Name=mRNA_S-dermatodea_contig853.16699.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKA
VDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCT
KCKQRWKE*
back to top

mRNA from alignment at S-dermatodea_contig853:10231..15129-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig853.16699.1 ID=mRNA_S-dermatodea_contig853.16699.1|Name=mRNA_S-dermatodea_contig853.16699.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4899bp|location=Sequence derived from alignment at S-dermatodea_contig853:10231..15129- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGAGAGCACTCACTGGTGCAGCTGTGGCCGGTGCACTATAATAATATG
CTCTTCTGTCCTACAGATGGAAACCTGCTCATGGTGGAGAGTGGTCCTCA
AGGATGGACGAGATTCTGCTGCCAGACTTGTCCGTATATCCACCCAATGG
AGCCTTCAGACAAGATCACCCGCAAGGTACTTGTTGCACATATTGGTGCA
GCCGTGTGGTAAAAGACATTAGATAGATAGACATCGTAACACGATAACAC
ACATTAGAGCCGTTCTCCACGGCACCTGGACGCCATATTGTTTAGGAAGA
CCGACTCCCGTTGCTCCATTGTCTAGTACGCGCGGGAGTCTGCTGTGACG
CTGTTTGGGAGATACTTTCGTGGATGACATGCGGCCGCGTTTCCTCTTTC
CGTTGACACGCATCAGTCATCAGCCATCAATCAGTGTAAGCCAGGCGCTG
ATTCCTCGCGTTCCGTGCGGTGCCCTTCGCCCGAGGCCCTCATCGGCAAG
TACCGCCCTGCCCGCCTACTTGAAAGGATTGACAAAAACAGGACCACGAA
CACTGTCCTGGGCGAGTTTCGTTTTATGTTTGCAAATAGTTTCTCGAGAA
GCAGCCCCTTCTTGTCTTCGAATCCTGCCGGTACAGATCGTCCTCAAGAA
GAAGGCGGTGGATGACATCATGGGCGGGGAGGATGCATGGGCTAACGTCG
ACAAAACGCAGGTGCGTTTGCACTCTCACGACGGCACTAGTTGTCTCAGC
GGGCGTGTTCATACCGCCATATTCGAGTCCTGTCTTCTTGGTGCGATTGG
CTATAATACAGCTATTGATGTGTACTTGTATGTACTTGCGTGCTCTCTCG
TCTTTCTGATTAGCATCATACAGAGAGTCGGGGAGGGTTGGAGGTGACCA
GCTGGCGAGGTACTATTATTGTATATCTCTTTCGTTGTCCGCCAGTGTCA
TGTACCGGCGGTGTCCACTGAAAAGTTAACGGAAACAGAGATGGCACTCG
CACTGGCGACGACAAGGCACAGTATATACTATTATAAGAGGGCGCGGCGG
TGGCCCTGTACGCTTTAGGAATACTTCACGTGGAATCCTTCTACTTCTGT
TCAAACAGTGTGTCTTGCGGGGGATCTTCCCCTCCTGATCTCCCGTCTCC
CATACAACATACTATTTTGCAGCGTTGGTGACAATACCTCTGTATGATCC
GAGTGCGGCGTTCTCTCTTTGAACGTCTCTGTCTCAGCGCCTCAGCAGCT
ATCGGCTCCTTTAGCGTTGCCTTCAGAGCATTTGACCCCAGGCACGCCTT
CTCCACCGTTCTCCCTCGCAGGCGACATGTCCATTCTGCAACAACAAGGA
GGCTTTTTTCTTGATGGTGCAGCTGCGTTCGGCCGACGAGCCGATGACGT
GCTTTTACAAGTGCACCAAGTGCAAGCAGCGATGGAAGGAGTGAATCAAG
GCTTCGGTTTTTTGGCCCCCCCTCCTTTGCACCTCTACCAGAGTGCTTCG
CTTTTGTGCGTCGCCCGTTATTGATTTGTATGCAAGTACTTGTATGTTTA
TGTTGTATGTTGATGTTGATGTTGATGTTGATGTTGACGTTGATGCTCGC
TTCTTGCAAAAGTGGGCGGGCGGGTGTCCCCTCGTGTCGTCTCTAGCAGG
TACAATTGGCATCATTGGTGCCACGAGTATCGAGGGTCTTTGATTTTTCG
CACCATCAGTGGACCTTTTCCTCGCTGTGTGGGAATGTCACGACTAAGAT
CGAGTCGGTTCTGCTCTACCTGAGAGCAGCACAGCAGGGTTGACAATGCA
TCTTTGTTTACTTGGAGACTTCGAGCAACGTTTTGGTCGACCCGTAGGCA
GCGTTGCACAAGTGAGCGTGCTACTATTAATACACGTTGAGATCAAGTCG
GGATCGCGTTAGGGCGAGCATGATGAACATCTCGGGTCTTGAAATGAGGC
CGACTCGGCTCGTTGTTTTGTTGGCTACCGAGTCCGTGACGAAACGCGAG
CAGGGCGAAACTATTGTGGGGGCGAGCTGTCTTGGCGGTAGAGATACATG
TCGTGCGAGCATATTGGTTGATGAATTTATGCGAGTTGCTCAAGCACGCT
GGGCCGCCTGTCCCGGGAGTGTTGTGAACAGTTCATCGTGAAAAAGTTTA
ATGTATGTATATCTACTGTAGGCTTGTGTATTCTCGGTGATGAAAGCATA
TATAAGCACACTTTGTGTTCACATGTCGCGGTAGATTGCAAGACGCGACA
AACGGCGCACTGATCACAGCGTTTCCGTTTGGACATATCTCCAACGTGTA
AGTTCAATTAGCTTTAATCGCGCTGCGAGCAACGCCGTCATTACAAGTTT
GCAAGATACACGCAGTGCCTTGTTGCACCATACACGCAGTGCCTTGTTGC
ACCGACAACACTCTACGTACGACACGGCAAAGTCTTCATGCCCGACACCA
ATGAATAAGGAGATACATATTTGCTACAAGTACACCGCCTACCGAACGTA
CATACACGCAAGTTGATGTGGTGCCTCTCAACCCTTGCAATCGCCAGGCT
AACCAAAGAGAAGCGGTAGACGCCCACAAGACAAAAAAACAAAACGTACC
GCCAATTGCTTCAACGTCGTAGAGGTGGATAAACCGAAGGGGCACTCCCC
TCGTACCCTCAAATGCGTGCTGTATCACAACTAAAGACGACCCCGTCGCC
GCCACGCAGTCAATATAACGTACATTTCGATGCTACCTGCTACACTCATC
GGCGGGCACGCCACAACCCATCGCCAGTTCCGGCCTACACATGAAACATG
GAAGTCACGACAAGCTGATGTGCGTGTCCGCGCTTCTTTTACTTCCATCC
ACCGAAACCTTGTCGCCGCTGTCAACTCCTCCCGAGGCCTTCGACGCCCC
TCTGGTCGCCTTATGGTTCTCGCTTTCAGCAGGGGGGTCGATTGGGATCT
CGATGGGCTGCGCGGGTGGCTCCGGTGCTACCCTGGGCAAGACAAGGGTG
AGCACGCCGTCCTCCAGCTTCCCGCGGACGCCCGACACATCAATCCCTTC
CCCGATTTGGAAAGAAAGCTCGAAGCTTTCTTCGGTAAACGGAGGCGTTG
CCGGCGATTCGGAGGACTCTGCGGAGTCGGGAGAGGCAGAGCTTTCACCC
GCGGCGGAGGGGTGGTCGGCGGTGCGCGACTTTTTCCTGACGGCGGTGAT
CTTGAGCGTCTTGATCGCGGAATCCTCGGAGATCTGCGCGTCAACGTCAT
GCTTCTTGCAGCCGGGAAGGTCGACCGTCACGATGACAGCGTCGGGCGTC
TCGAGCACTTCGTGGCGCGGGGTGTTCGTCGACGTACCGGCAGATAGCTC
ACGTGCGACTGCGCGTAGGACGGGGTGTTGTGGGTATGGGGAGGGAATGT
AAACATGGAATGTACTGGGATCAGGAAGTCTTGCGTGCGGAGCTGCAAGA
GGCGTGGGGTAGACGGCCACATTTATACTTTATAATAAGGACGCCTCGTG
GAACACTGCACAGCAGGGTTAGCAAGTGGGGACGACCGCGAAAGTTTTGG
CGCAACACGAGACACGCTGTCAAAATATGCATCAGAGCATCATACTTGTA
TGGGTCGAGCGTTAGAGCGCCTGTACATCTGCAAGACGCCCGAACGCCTG
TCCGCGTGCCGTGCGAAGAACGGACTGAAAATAGCACAATATTTGACAAA
AGAGCCAGTTTGATCACCACCCGAACTATTTCGGTTCGCATCATATGCAT
AGAGCGCGCTCAGCAACCCCCACACCACAGCACTGTTCCTGCAACGGCAA
CGGCATGAGGCAACTAAAGCTCAGGCGCTGCATCTCTCTCGCCATTGGCT
CACGTTGGGATGGTACTCAACGACCAACGATCATGCCAGTGGTGGACGGA
AACAATTGCGCATCAACTGCTTCATCCCGGGGGAAATCGGAAATCGGAAA
TCGGAATCGGATATCGGAAGCAGAGAGCTGGCGAATGCACACCTGGCTAT
GCAAGCGGCAAACAACTAGCAGCACTGCATAGTGCGTTCTTCCGCAGCAC
TTGAAGGGGAGTGAGTGTGTGGCGAGTTCGAGAGGCCCACCTCCGCGGGC
GGGCACATGCGGTGTAATTTGTGTTGGTGGCGATCGTGTAGAAGTTGAAC
ACGTACGTCAAGCCAGCGGCGTACAGCGTAGAGGCAGGCAACACATGTAC
TTGCACAAGTACTGGTACATTTTTACTTGCATGCACAGCGATCGCTGTTG
ACAATCGATTTGCATCCACAGACATACGGCATAGAGCTAGGTAGAGAGGT
AGGCATCGACAACACCCAACAAGGCTTAGGTATCGTGAGCCTTTCCTGCA
TCTGCAACGAGAATCAGGCAAACCAGGGAGCCCGTAGTGCCTTCCTCCCA
GCCAAGAGGTCCGCGATCCTCAAGCACGCAGCATGTAAACATGCAAACCA
CCCCAACGTTTGAAAATAAAACACCCCGCTCTCACCTTTGGTGATGTCGC
CCAACACGTCTTGGAAGATATCGACGAGCGCGCCGCCACCCCGAGCTTGA
CCCTGGAAAGGCCTGAACGCCCCACCGTCCAAGTCGCTGCTGAGGAAGGC
AGACGGCCAGCGGTTGGATCCCACCCGGCCGCCGCGCCAGTTGCGGTAAC
CGCCGTGGGACTCAGCGCCCTCGAGAGCGCCCAAGAGAAGGATCGCTACC
GCAGTGGTCGCGAGATGCGCGCTAGGGTGAGCCATGATTGCTGTTGTTGT
GCTGTTGTGAGGTGTGTGGGCGTGGTGGTGTGGCGTTGTGTGTGTGTGCG
CGTGGGGCGATAGCGAGGGCGCAAGAGGAGAAGGTTGTGCAGCATGGGAA
ATGAACACGGGTCGAGCCACGAGGCACTACACGTGTATCGATCTACGAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig853:10231..15129-

>mRNA_S-dermatodea_contig853.16699.1 ID=mRNA_S-dermatodea_contig853.16699.1|Name=mRNA_S-dermatodea_contig853.16699.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig853:10231..15129- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCTTCTGTCCTACAGATGGAAACCTGCTCATGGTGGAGAGTGGTCC
TCAAGGATGGACGAGATTCTGCTGCCAGACTTGTCCGTATATCCACCCAA
TGGAGCCTTCAGACAAGATCACCCGCAAGATGCTCTTCTGTCCTACAGAT
GGAAACCTGCTCATGGTGGAGAGTGGTCCTCAAGGATGGACGAGATTCTG
CTGCCAGACTTGTCCGTATATCCACCCAATGGAGCCTTCAGACAAGATCA
CCCGCAAGATCGTCCTCAAGAAGAAGGCGGTGGATGACATCATGGGCGGG
GAGGATGCATGGGCTAACGTCGACAAAACGCAGATCGTCCTCAAGAAGAA
GGCGGTGGATGACATCATGGGCGGGGAGGATGCATGGGCTAACGTCGACA
AAACGCAGGCGACATGTCCATTCTGCAACAACAAGGAGGCTTTTTTCTTG
ATGGTGCAGCTGCGTTCGGCCGACGAGCCGATGACGTGCTTTTACAAGTG
CACCAAGTGCAAGCAGCGATGGAAGGAGTGAGCGACATGTCCATTCTGCA
ACAACAAGGAGGCTTTTTTCTTGATGGTGCAGCTGCGTTCGGCCGACGAG
CCGATGACGTGCTTTTACAAGTGCACCAAGTGCAAGCAGCGATGGAAGGA
GTGA
back to top