mRNA_S-dermatodea_contig8529.16697.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8529.16697.1
Unique NamemRNA_S-dermatodea_contig8529.16697.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8529.16697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8529contigS-dermatodea_contig8529:3118..8174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size907
Cds size837
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925349.5244372-UTR-S-dermatodea_contig8529:3117..31421622925349.5244372-UTR-S-dermatodea_contig8529:3117..3142Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8529 3118..3142 +
1694079873.4216952-UTR-S-dermatodea_contig8529:3117..31421694079873.4216952-UTR-S-dermatodea_contig8529:3117..3142Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8529 3118..3142 +
1622925349.6189609-UTR-S-dermatodea_contig8529:8129..81741622925349.6189609-UTR-S-dermatodea_contig8529:8129..8174Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8529 8130..8174 +
1694079873.51457-UTR-S-dermatodea_contig8529:8129..81741694079873.51457-UTR-S-dermatodea_contig8529:8129..8174Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8529 8130..8174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925349.5377-CDS-S-dermatodea_contig8529:3142..32471622925349.5377-CDS-S-dermatodea_contig8529:3142..3247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 3143..3247 +
1694079873.4341733-CDS-S-dermatodea_contig8529:3142..32471694079873.4341733-CDS-S-dermatodea_contig8529:3142..3247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 3143..3247 +
1622925349.5499725-CDS-S-dermatodea_contig8529:4458..46321622925349.5499725-CDS-S-dermatodea_contig8529:4458..4632Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 4459..4632 +
1694079873.4450862-CDS-S-dermatodea_contig8529:4458..46321694079873.4450862-CDS-S-dermatodea_contig8529:4458..4632Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 4459..4632 +
1622925349.5603-CDS-S-dermatodea_contig8529:5339..54141622925349.5603-CDS-S-dermatodea_contig8529:5339..5414Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 5340..5414 +
1694079873.4558218-CDS-S-dermatodea_contig8529:5339..54141694079873.4558218-CDS-S-dermatodea_contig8529:5339..5414Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 5340..5414 +
1622925349.5715065-CDS-S-dermatodea_contig8529:6221..62511622925349.5715065-CDS-S-dermatodea_contig8529:6221..6251Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 6222..6251 +
1694079873.4662378-CDS-S-dermatodea_contig8529:6221..62511694079873.4662378-CDS-S-dermatodea_contig8529:6221..6251Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 6222..6251 +
1622925349.5857673-CDS-S-dermatodea_contig8529:6659..67641622925349.5857673-CDS-S-dermatodea_contig8529:6659..6764Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 6660..6764 +
1694079873.4766247-CDS-S-dermatodea_contig8529:6659..67641694079873.4766247-CDS-S-dermatodea_contig8529:6659..6764Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 6660..6764 +
1622925349.5978177-CDS-S-dermatodea_contig8529:7368..75001622925349.5978177-CDS-S-dermatodea_contig8529:7368..7500Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 7369..7500 +
1694079873.4859173-CDS-S-dermatodea_contig8529:7368..75001694079873.4859173-CDS-S-dermatodea_contig8529:7368..7500Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 7369..7500 +
1622925349.6074321-CDS-S-dermatodea_contig8529:7913..81291622925349.6074321-CDS-S-dermatodea_contig8529:7913..8129Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 7914..8129 +
1694079873.4981282-CDS-S-dermatodea_contig8529:7913..81291694079873.4981282-CDS-S-dermatodea_contig8529:7913..8129Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8529 7914..8129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8529.16697.1prot_S-dermatodea_contig8529.16697.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8529 3143..8129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8529.16697.1

>prot_S-dermatodea_contig8529.16697.1 ID=prot_S-dermatodea_contig8529.16697.1|Name=mRNA_S-dermatodea_contig8529.16697.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=279bp
MLDLVGKVAMMILGEAWKVAGYPIRLFLTWKGEYVEAAYLDRIAADSRAT
MERNSELNNVLNFTTRRVNDECKNHMDTIRRQHEESRECSKAKAYAKQLE
EKLQDADKCRAEYEDFKRLVAAYETPLEFEPGEAWVQIFETAADKTTKEI
FLPVTVIAPGVTQVGRGCACTEGSFIVQPGGAENFSAWKREEGKITWEVP
HSKLFAKGPTVLNRRCNGCGFTNILSCKTPAGQVLCHDCADRPRHNARCQ
AWQRNERAPSFGFRQSTACDCYESRGCA*
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mRNA from alignment at S-dermatodea_contig8529:3118..8174+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8529.16697.1 ID=mRNA_S-dermatodea_contig8529.16697.1|Name=mRNA_S-dermatodea_contig8529.16697.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5057bp|location=Sequence derived from alignment at S-dermatodea_contig8529:3118..8174+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGGCCCTGTGGGTCTTGAAGACCATGCTGGACTTGGTCGGGAAGGTTG
CCATGATGATTCTGGGTGAGGCGTGGAAGGTCGCCGGCTACCCGATCCGC
CTTTTTCTGACGTGGAAGGGAGAGTACGTGGTGAGTGCAGTTGTTATCGC
GGGTATTCGTTTTCTGTTCTGCACATGTATGGGCGTGGTGATAACCAGAT
ATCGATATGTCGTTGGTACCCGGTGCTTTAGCCTCATGTCGCCTATCGTG
CAATGGCATCGCTTGACCAATGAATATTTCGTGTTAGCCGAGGGTCGTTC
GGCAAGGCCAACCTTTCGATGCCGATTCAGTACTTGTGCTGCATTCATGT
GCACTTGCAGCAAAGCACGGGATTCGTCAAGATTATATTACTGTCACAGT
GCAAGGCATTTTGTTTGAGAGAGTGCGATTCGACTATTCGGGTGTCCCAG
GACGGTTTTGTGCGGTATGGTCTATCCAGCGGGTGTGTTCATCATACGTA
GTTCGCGTTTCGATCATAAATGTTTGTGAAAAACCTACGGTGGGGTTTGT
TCCTGGCCGTGTGGTTTGAAATTCTCTGAAGACGGTAGGAACACTGAGCA
CCCCCCCCCCCCACGACATATCTTTGTGTATTTCAAATTCTCGAGCAAAG
GAGGTTTTGCATCCGCTTCATTGGGATAAGAGCGATCGATTGCGGCTTTG
ATGGTTTTTGTGATCGCCTGGGGAGCTTCCTTATAATTACAGGCCTATGG
CGTTTAAGACAGGGATTTACGGCCGAATTTCAAGTCAACTTGGGAACCCA
TAGTTTCCAGATAGCCAAGAACCGTCGGTACCCGATCGCGAAAATATGCT
CCAAAAAGTAACCCCCTCGAGAAAACAAGCGTCAATTTTTTATAATATAG
CCGGAAAGCAAGCATACACGTCCGATACCAAAACATGGCCTCTGCCAGTG
TCCGCCTTGAGATAGAGTGTGCGTTTTCGCGATGTTTTCGGCAGTGCGAG
GGACCCTCCCTAACCTAAGAAAGTTAGGAAATTCCAAAACGCAAGTTATT
GTAGAGCGTTCCCTGGATGGACGATAGGTTTATGGCGGATCGGGTTTCCA
ACGGTAGAAGTGTTAAGAGGAATAATCGAAGTTGCGCTTATTCTCAACGT
CGCACAAGGGTGTACTTTATCAAAGCAGTCGGCAAACCATAACTAGTGGA
AGCAGGTTGTTTTTTGTTGGGTACCGGCAAGATATCATTGGAAAGTACAC
TGCCTTGGACCTCGGCTACATATAGGCTTCGCTTGACCCACCATCAGCCT
GACTGAACCCAGTGGCCTTGATCGGCCCTGCGAAACCTCAGGAAGCGGCG
TACCTCGACAGGATTGCTGCGGACAGCAGGGCCACCATGGAAAGGAACAG
CGAGCTGAACAACGTCCTCAACTTCACTACCAGAAGGGTTAACGACGAGT
GCAAGAACCACATGGACACCATCAGGCGGCAGCACGAGGAATCGCGTGAA
TGCAGTAAGGCAAAGGTGAGCACGTGGCGGCGTATGGTAGGCCTTAGCTC
TCTCGCGTGGGCTCAGGTGTCTACGTGTGTGTAGAATGATACTGTAGCCC
TAGGCAATATCAATTGTTCGTCTTGCCCTAAGGATGGTGATGCCGACTTG
TGCCCTCTCTATGGCCGAACATTAGGATTTTGAGGGATAAAATGATTGGT
TCATTGACGTATTATCACACTTACAACCGACCGGCCAGCCAATCGTTGTC
GATCCCGCTCGTAATCAGATAAGTACTCGAGGCTTCGATAAACCGACTAA
TGTAAACGTAGTACGTAAGGAACAATGGACAAAACGTATAGTCCCAGATT
GAGACCCTAGAGTATGCGGAAAACTCTGCTTGCCGTCGAGAATCCACGGT
TGACATGTCATCTGTAGATAACCGTCTGACGCAACATATATAAAAGCGCC
TAAACCACCAATCGTGCCATCGGCAGATATGGGCGACACTTTCTTCATGT
ACACATACGTTTGTTTGAAACGATCGTTCCGTCTGAGTGATAAATCGTTT
ACGATGCTTTCGGTGAGCACAGTGCGTGCAACCCCGTCCACGTACAATGA
ATTGCCGCGGGTGAAACAAGTAAACACGATAAACGATTCAGACACAGAGG
AGTGCCCAAAAACACAAAAAACCCCAAACATACAAACCATGTTTCCTGTC
GACTGGCCGTTTGGTGTGGCAGGCGTACGCCAAGCAGCTGGAAGAGAAGC
TGCAGGATGCTGACAAGTGCCGGGCAGAATACGAAGACTTCAAGAGGGTG
AGGGAGCGTTCCGATATTCGAGTCTCCAATCGGAAGCAAAAACGCTGCTG
GAGTGCTGTAGAGCAACCGAACTAGTGCTGTAGGATGAAATCTGTGTATA
GCAACCGAAATGACGGAACCGTTGGCAGCGAGAGGCTTTGCTGTCTTGCT
GGATTACATTTAACGTTTTTACGACAGTGTTAAGTAGTTCACTTTTGTTG
TTCGTGTGCATTAATTAAAGGCAGATGGTGTGTATACATCATGCCTGCAC
GTCGGAGTCAGCGATAAACACGGCAAGAGTAGACTGATCGTGTGTAGGCT
GGCGATATGGTTCTGTACCGGTACCTCACAATCGTGGTGCACAACACCAA
CCAAGAGAATTACCGTACACACATTTACCTAGGACGAGAGAGTCCCTAAT
ATCAAACGCCGACCATGAGTGATTATAGTGGTAGATTAGAGTCTGTTCAG
GCTGTACGCGTGCACATGTAGACGTAATGTTGCTTCGAAACGCTTGAATT
TCAACAGGATGCCTGATACCACTAGCATAGTGCCAAACGGGCGACAATGG
ACGCATCTGCCAGAAGATGAATCGGTAGAACAAAGCACGAAACCATTCCC
ACGCGTACACGATCGTCTACAACAAGCAAAGCGCCTCGCGCACACCTGAT
CGTCTATCTCAGCTTGAGTTTGTCTCCCACCCCACCCCCACCCCCGCCTA
ATCGTTCCGATGACATTCTTCACTTTCGCTGTGTTTCGCGCAATAAATCC
ACCCGGCTGGCACGGTTCGTCACCGGCGCTGGGCGAACGATGCGCTGTGA
GCAGTTGGTTGCTGCCTACGAGACGCCCCTCGAGGTACGATGCGTTTTTT
ACTTGCGCGTTACGAACGCCATAAATTGCTTCGTTTTGCTGTCGTTAAAG
ACCCCTGCCGGAGACACGATTATGGGCGTGTACTTGTTTGCTGGATTGAG
AGCGTCTCTGTCGGTTGGCGATGGGTACGGGTGGTGGCCATGGTGACCCG
CGTGTTTATTGTTACGGGACGACCGAACACGGACGGTCGATGAAAACTAG
CGAGGTTGTGTGTGATGCTTTAGGTATTTTTCACCTGCCCATGTTACGTG
GCAGCATATGCGGCGGACGAGATAAAATATGCTCCTTCAAGAAGGACATG
TAGTGATGCAGTGTTTTGCTCGAGGTGCACCTGGCTGACCAACGTACGTC
GTGATATAATCGTACCCACTCCCCCCTCTGACTTCTCCGCAGTTCGAACC
GGGCGAGGCGTGGGTGCAAATCTTCGAGACCGCCGCGGACAAGACCACGA
AGGAGATTTTCCTTCCGGTTACCGTTATCGCGCCAGGCGTGACTCAGGTG
AGCGTTCTCTAAGGCAATAATGTTGCCGGGGAGCAACACGCGGCCAGTGG
CAATAGGAGAGGCCCTTTTTGGGCAACCTGATCGGTTGTCGTCAGGCGAT
GTGGATCGAAAGACGGCCGGCCGTTGTCGTTATAGTTTGGCTGAATAGCG
TAGGACAGCAATCTTAGCAGAAGAAGTAACGAAAAGCTTGGGATCGAATT
AGTTTATTTTGCGATGCTTAAGCACGCATGATTCCACAAGGCGGACGCCC
CCCGACTGGAAAAATACTAGATCAGGTGGACAACGAGACATTCCTTGGCC
GTCCCCCTCCCTCTGCCTGCCTTGCATTCCTCACGTGGCTGGCGTTGCGA
GATCACGTCACCTCTAGCCTAGAGTACCGAACGCCCAGCCTGATGGTACA
CTCTCCGCGGTAAGACCAGGCGGCGCGATGTTACCGACCTCCCGTTAGTT
TGTTCACACGGAACGGAACCCCCCGCCCTTCTCCTGTACGACTGATACAA
TGGAAAGTTGATCAAATCATGTCTTGGCCCCGCCCCACTAATGAACAACC
ACACTTGCACGTGACCCTGTCCCGGGCCGGTCGAAACTTGCTGTGCACAA
GGTGGGGAGGGGTTGTGCGTGCACGGAGGGGAGTTTTATCGTGCAGCCCG
GCGGAGCTGAGAACTTCTCGGCGTGGAAGAGGGAAGAGGGAAAGATAACG
TGGGAAGTGCCACACTCCAAGCTATTCGCAAAGGTACGGCCCCAGCTTGT
CGTGGCAGGTTGATGCACTTGTTTTTGACGGTCCGGTGGCGTGCAGTTCT
CTGAGCATACGCAGGAAGCGACGCAACACCCAAACACGGGATTGGATGTA
TCATAGATCCATTATCCCAGCCCTGATATACCTTCAACTCGCGCTGGGGT
ACATGATTTCCCTGTCAAAATCATCGAAACGAGGGCTAGAGTGGCACCCA
ACGGTAGAGTAGGCACCAACCGATACACGGACTGCAGCGGTTCACTTGGC
ATACAGGTGTCGAGCAAGCCAACTCATTGCATCCCGCTTGAGGACACTTC
TTCTGCTCGCCCCCGCAAACCATTCGCCTGCCGCATCCACCTCTTCGCGC
GATGTGCACTCAAACCTCCGTACCTGAACGCCCTCCCGACTTACAGGGAC
CGACCGTGCTCAACCGTCGGTGCAACGGCTGCGGCTTCACTAACATATTG
AGCTGCAAGACACCGGCGGGACAGGTCCTGTGTCATGACTGCGCGGACAG
GCCCCGCCACAATGCGCGATGTCAGGCATGGCAGCGCAATGAGAGGGCCC
CATCCTTCGGGTTCCGGCAGTCCACCGCGTGTGATTGCTACGAAAGCCGA
GGGTGCGCTTAGGGTCGAGGGGGGTGTAGCCGCGGCAAACGCACGTCTAC
GGGGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8529:3118..8174+

>mRNA_S-dermatodea_contig8529.16697.1 ID=mRNA_S-dermatodea_contig8529.16697.1|Name=mRNA_S-dermatodea_contig8529.16697.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at S-dermatodea_contig8529:3118..8174+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGGACTTGGTCGGGAAGGTTGCCATGATGATTCTGGGTGAGGCGTG
GAAGGTCGCCGGCTACCCGATCCGCCTTTTTCTGACGTGGAAGGGAGAGT
ACGTGATGCTGGACTTGGTCGGGAAGGTTGCCATGATGATTCTGGGTGAG
GCGTGGAAGGTCGCCGGCTACCCGATCCGCCTTTTTCTGACGTGGAAGGG
AGAGTACGTGGAAGCGGCGTACCTCGACAGGATTGCTGCGGACAGCAGGG
CCACCATGGAAAGGAACAGCGAGCTGAACAACGTCCTCAACTTCACTACC
AGAAGGGTTAACGACGAGTGCAAGAACCACATGGACACCATCAGGCGGCA
GCACGAGGAATCGCGTGAATGCAGTAAGGCAAAGGAAGCGGCGTACCTCG
ACAGGATTGCTGCGGACAGCAGGGCCACCATGGAAAGGAACAGCGAGCTG
AACAACGTCCTCAACTTCACTACCAGAAGGGTTAACGACGAGTGCAAGAA
CCACATGGACACCATCAGGCGGCAGCACGAGGAATCGCGTGAATGCAGTA
AGGCAAAGGCGTACGCCAAGCAGCTGGAAGAGAAGCTGCAGGATGCTGAC
AAGTGCCGGGCAGAATACGAAGACTTCAAGAGGGCGTACGCCAAGCAGCT
GGAAGAGAAGCTGCAGGATGCTGACAAGTGCCGGGCAGAATACGAAGACT
TCAAGAGGTTGGTTGCTGCCTACGAGACGCCCCTCGAGTTGGTTGCTGCC
TACGAGACGCCCCTCGAGTTCGAACCGGGCGAGGCGTGGGTGCAAATCTT
CGAGACCGCCGCGGACAAGACCACGAAGGAGATTTTCCTTCCGGTTACCG
TTATCGCGCCAGGCGTGACTCAGTTCGAACCGGGCGAGGCGTGGGTGCAA
ATCTTCGAGACCGCCGCGGACAAGACCACGAAGGAGATTTTCCTTCCGGT
TACCGTTATCGCGCCAGGCGTGACTCAGGTGGGGAGGGGTTGTGCGTGCA
CGGAGGGGAGTTTTATCGTGCAGCCCGGCGGAGCTGAGAACTTCTCGGCG
TGGAAGAGGGAAGAGGGAAAGATAACGTGGGAAGTGCCACACTCCAAGCT
ATTCGCAAAGGTGGGGAGGGGTTGTGCGTGCACGGAGGGGAGTTTTATCG
TGCAGCCCGGCGGAGCTGAGAACTTCTCGGCGTGGAAGAGGGAAGAGGGA
AAGATAACGTGGGAAGTGCCACACTCCAAGCTATTCGCAAAGGGACCGAC
CGTGCTCAACCGTCGGTGCAACGGCTGCGGCTTCACTAACATATTGAGCT
GCAAGACACCGGCGGGACAGGTCCTGTGTCATGACTGCGCGGACAGGCCC
CGCCACAATGCGCGATGTCAGGCATGGCAGCGCAATGAGAGGGCCCCATC
CTTCGGGTTCCGGCAGTCCACCGCGTGTGATTGCTACGAAAGCCGAGGGT
GCGCTTAGGGACCGACCGTGCTCAACCGTCGGTGCAACGGCTGCGGCTTC
ACTAACATATTGAGCTGCAAGACACCGGCGGGACAGGTCCTGTGTCATGA
CTGCGCGGACAGGCCCCGCCACAATGCGCGATGTCAGGCATGGCAGCGCA
ATGAGAGGGCCCCATCCTTCGGGTTCCGGCAGTCCACCGCGTGTGATTGC
TACGAAAGCCGAGGGTGCGCTTAG
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