prot_S-dermatodea_contig85203.16694.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig85203.16694.1
Unique Nameprot_S-dermatodea_contig85203.16694.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length140
Homology
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 3.060e-49
Identity = 86/137 (62.77%), Postives = 105/137 (76.64%), Query Frame = 0
Query:    1 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQ 137
            ++  DIEW+IS +G+P NPPAT+Q AAG  VV+  VLHGQR  P ELP  +  LLED  LT  GVGIKGDCTR+ +F+GV VA+AVDL +LA  RKV +G +RGLADLC HLLG++L KDP VRLSKWN+ +LS DQ
Sbjct:  253 LLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQ 389          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.500e-17
Identity = 46/142 (32.39%), Postives = 82/142 (57.75%), Query Frame = 0
Query:    1 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRH---SPKELPSVVAALLED-EALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 138
            ++G D EW+ +L G+  NP +TLQ +  +       LH + +   +   +P V+ +LLE+  +  + GV +  D + ++ ++GV VAN +D+ T A+   V   + R LA + S L+G+ L KDP +RLS+W+   L+ +Q+
Sbjct:  154 VLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFHLHRRTNRATATSTIPKVLQSLLENVPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETSS-RSLAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQV 294          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A6P5EXU7_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EXU7_ANACO)

HSP 1 Score: 81.3 bits (199), Expect = 2.850e-16
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 0
Query:    1 MIGFDIEWDISLS-GSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 138
            ++G D EW  + S G+  NP A +Q   G   +V  +LH        +P  +A  L D    F GVG+ GD  R+ +  G+ VA+AVDL  LA  R      K+ GLA L + ++   + K   VR+S+W+R++L+ DQI
Sbjct:   53 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADY-----VPLALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQI 187          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: I3SWT4_LOTJA (3'-5' exonuclease domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SWT4_LOTJA)

HSP 1 Score: 80.5 bits (197), Expect = 5.310e-16
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 0
Query:    1 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLA-QMRKVPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 138
            ++G DIEW  +      NP A LQ    +  +V Q++H        +P  +++ L +   TF GVGI+GD  ++      TVANAVDL TLA ++   P   K GL  L   +LG  + K   +  SKW+ + LS +Q+
Sbjct:   51 IVGLDIEWRPNTQAFKNNPVALLQLCVDHRCLVFQIIHAP-----SIPDSLSSFLSNPQHTFVGVGIQGDVDKLLKDRSFTVANAVDLRTLAAEVYGDPEMMKAGLKALTQRVLGMNVEKPKKISTSKWDDRYLSVEQV 184          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: UPI00190061BD (Werner Syndrome-like exonuclease isoform X1 n=2 Tax=Benincasa hispida TaxID=102211 RepID=UPI00190061BD)

HSP 1 Score: 79.0 bits (193), Expect = 2.350e-15
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 0
Query:    1 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQ 137
            M+G DIEW  + + S  NP ATLQ   G   ++LQ++H       E+P  +   LE+E+LTF GVGI  D  +++  +G+ V   VDL  LA+        K  GL  L   +LG+ + K  +V +S+W+++ L+ +Q
Sbjct:   55 MVGLDIEWRPN-NRSYDNPVATLQLCMGRRCLILQLIH-----TPEIPKSLFEFLENESLTFVGVGIDEDAEKLNCDYGLKVGKRVDLRNLAESVTGRRDLKNAGLKRLGKEVLGKEIHKPKSVTMSRWDQEWLTLNQ 186          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A199VKE8_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VKE8_ANACO)

HSP 1 Score: 81.3 bits (199), Expect = 2.540e-15
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 0
Query:    1 MIGFDIEWDISLS-GSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 138
            ++G D EW  + S G+  NP A +Q   G   +V  +LH        +P  +A  L D    F GVG+ GD  R+ +  G+ VA+AVDL  LA  R      K+ GLA L + ++   + K   VR+S+W+R++L+ DQI
Sbjct:  252 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADY-----VPLALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQI 386          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A8K0NE54_COCNU (Werner Syndrome-like exonuclease n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0NE54_COCNU)

HSP 1 Score: 78.6 bits (192), Expect = 2.950e-15
Identity = 47/139 (33.81%), Postives = 74/139 (53.24%), Query Frame = 0
Query:    1 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLA-QMRKVPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 138
            ++G D+EW  S S   QNP A LQ   G   +V  +LH        +P+ +   L D+  TF GVGI GD  R+ +   +++ +  DL  LA +    P   ++GLA L   +LG  + K   V +S+W+R++L+ +QI
Sbjct:   53 IVGLDLEWRPSNSRF-QNPVAVLQLCVGRRCLVFLLLHADY-----VPNALLNFLADDRFTFVGVGIDGDVERLSDDHDISIGHTTDLRCLAAEKMNRPELNQKGLARLAEEVLGVEVRKPRHVTMSRWDRRDLTWEQI 185          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A6J1J8Y2_CUCMA (Werner Syndrome-like exonuclease n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1J8Y2_CUCMA)

HSP 1 Score: 78.2 bits (191), Expect = 4.290e-15
Identity = 46/139 (33.09%), Postives = 79/139 (56.83%), Query Frame = 0
Query:    1 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 138
            ++G DIEW  + S S +NP ATLQ   G+  +++Q+++       E P  +   LE+E+++F GVGI+ D  +++  +G+ V   VDL  LA+        K  GL  L   +LG+ + K   V +S+W+++ L+ +QI
Sbjct:   55 VVGLDIEWRPN-SRSYENPVATLQLCTGSRCLIMQLIY-----TPEFPISLYEFLENESISFVGVGIEDDAEKLNCDYGLKVRKTVDLRNLAERVTGRRELKNAGLKSLAKEILGKEIRKPRGVTMSRWDQEWLTHNQI 187          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A811NZH5_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811NZH5_9POAL)

HSP 1 Score: 75.5 bits (184), Expect = 4.410e-14
Identity = 45/139 (32.37%), Postives = 69/139 (49.64%), Query Frame = 0
Query:    1 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRK-VPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 138
            ++G D+EW  S+S     P A LQ   G   +V ++LH        +P  +   L DE  T  GVG+  D  ++ + +G+ V   VDL TLA      P     GL  L   ++G R+ K   VR+S W+ ++L+ DQ+
Sbjct:   52 VVGIDVEWRPSMSKGHVPPVALLQICVGRRCLVFKILHADY-----IPESLCDFLADERFTIVGVGVLDDAAKLRSGYGLKVGRMVDLRTLAATTLGKPALRGAGLQTLVFEVMGVRMEKPHHVRVSAWDARKLTYDQL 185          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A5A7R5L9_STRAF (Polynucleotidyl transferase n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7R5L9_STRAF)

HSP 1 Score: 75.5 bits (184), Expect = 5.710e-14
Identity = 51/141 (36.17%), Postives = 74/141 (52.48%), Query Frame = 0
Query:    1 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRI--DNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 138
            M+G D+EW  +    P NP ATLQ +AG   ++ Q++H    SP   P  +A  L      F GVG+K D  ++  D+  G T A  VDL  LA         K+ GL +L   +LG  + K  AV++S W+ + LSP+Q+
Sbjct:   65 MVGLDVEWRPNRPSRPDNPAATLQISAGRFCLIYQLIH----SPY-FPLHLAQFLSCYGHDFVGVGVKSDLEKLWRDHRMGYT-AIPVDLRGLAADVYGSTNLKKAGLQELARTVLGTEMEKPKAVKMSAWDNRCLSPEQV 199          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE3.060e-4962.773'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JCK3_9PHAE3.500e-1732.393'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6P5EXU7_ANACO2.850e-1635.71Werner Syndrome-like exonuclease n=1 Tax=Ananas co... [more]
I3SWT4_LOTJA5.310e-1634.533'-5' exonuclease domain-containing protein n=1 Ta... [more]
UPI00190061BD2.350e-1535.51Werner Syndrome-like exonuclease isoform X1 n=2 Ta... [more]
A0A199VKE8_ANACO2.540e-1535.71Werner Syndrome-like exonuclease n=1 Tax=Ananas co... [more]
A0A8K0NE54_COCNU2.950e-1533.81Werner Syndrome-like exonuclease n=1 Tax=Cocos nuc... [more]
A0A6J1J8Y2_CUCMA4.290e-1533.09Werner Syndrome-like exonuclease n=3 Tax=Cucurbita... [more]
A0A811NZH5_9POAL4.410e-1432.37Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
A0A5A7R5L9_STRAF5.710e-1436.17Polynucleotidyl transferase n=1 Tax=Striga asiatic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..139
e-value: 4.6E-34
score: 119.3
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 2..137
e-value: 2.4E-7
score: 30.6
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 1..138
NoneNo IPR availablePANTHERPTHR13620:SF65coord: 1..138
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..138

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85203contigS-dermatodea_contig85203:215..634 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85203.16694.1mRNA_S-dermatodea_contig85203.16694.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig85203 215..643 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig85203.16694.1 ID=prot_S-dermatodea_contig85203.16694.1|Name=mRNA_S-dermatodea_contig85203.16694.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp
MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSV
VAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVG
TKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR0025623'-5'_exonuclease_dom
IPR012337RNaseH-like_sf