mRNA_S-dermatodea_contig8519.16687.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8519.16687.1
Unique NamemRNA_S-dermatodea_contig8519.16687.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8519.16687.1 vs. uniprot
Match: X2KU57_SCYLO (TypA/BipA GTP binding protein n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=X2KU57_SCYLO)

HSP 1 Score: 134 bits (336), Expect = 4.870e-35
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 QNCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQTRFVLKKALELGLQAV 198
            +NCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQTRFVLKKALELGLQAV
Sbjct:  136 KNCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQTRFVLKKALELGLQAV 201
[Close]
BLAST of mRNA_S-dermatodea_contig8519.16687.1 vs. uniprot
Match: A0A836CE33_9STRA (PBipA, plastid GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE33_9STRA)

HSP 1 Score: 130 bits (327), Expect = 8.570e-34
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 QNCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQTRFVLKKALELGLQAV 198
            +NCAI+YQG KFNLVDTPGHADFGGEVERILNMVDG+LLVVDSVEGPKPQTRFVLKKALELGLQAV
Sbjct:  134 KNCAIRYQGVKFNLVDTPGHADFGGEVERILNMVDGVLLVVDSVEGPKPQTRFVLKKALELGLQAV 199
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BLAST of mRNA_S-dermatodea_contig8519.16687.1 vs. uniprot
Match: A0A7S3GZ45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZ45_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.220e-32
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 QNCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQTRFVLKKALELGLQAV 198
            +N AI Y+GTK N+VDTPGHADFGGEVERI+NMVDG+LLVVDSV+GPKPQTRFVLKKALE G++A+
Sbjct:   54 KNAAIMYKGTKINIVDTPGHADFGGEVERIMNMVDGVLLVVDSVDGPKPQTRFVLKKALEKGIRAI 119
[Close]
BLAST of mRNA_S-dermatodea_contig8519.16687.1 vs. uniprot
Match: T1BB85_9ZZZZ (Protein synthesis factor, GTP-binding domain protein (Fragment) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T1BB85_9ZZZZ)

HSP 1 Score: 112 bits (280), Expect = 1.380e-30
Identity = 49/66 (74.24%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 QNCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQTRFVLKKALELGLQAV 198
            +NCAI+Y+GT+ N+VDTPGHADFGGEVER+L+MVDG+LLVVD+V+GP PQTRFV +KAL LGL+A+
Sbjct:   59 KNCAIEYRGTRINIVDTPGHADFGGEVERVLSMVDGVLLVVDAVDGPMPQTRFVTRKALSLGLKAI 124
[Close]
BLAST of mRNA_S-dermatodea_contig8519.16687.1 vs. uniprot
Match: F0XW47_AURAN (Tr-type G domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW47_AURAN)

HSP 1 Score: 121 bits (303), Expect = 1.530e-30
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 QNCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQTRFVLKKALELGLQAV 198
            +N A++Y+G K N+VDTPGHADFGGEVERILNMVDG+LLVVDSVEGPKPQTRFVLKKALELGLQAV
Sbjct:   99 KNAAVEYKGVKINVVDTPGHADFGGEVERILNMVDGVLLVVDSVEGPKPQTRFVLKKALELGLQAV 164
[Close]
BLAST of mRNA_S-dermatodea_contig8519.16687.1 vs. uniprot
Match: A0A6H5KYY6_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYY6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.130e-30
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 QNCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQTRFVLKKALELGLQAV 198
            +NCAIKY+ TKFNLVDTPGHADFGGEVERILNMVDGILLVVDS  GPKPQTRFVLKKAL+LGLQAV
Sbjct:  146 KNCAIKYEDTKFNLVDTPGHADFGGEVERILNMVDGILLVVDS--GPKPQTRFVLKKALDLGLQAV 209
[Close]
BLAST of mRNA_S-dermatodea_contig8519.16687.1 vs. uniprot
Match: A0A8J2WJI0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WJI0_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.010e-30
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 QNCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQTRFVLKKALELGLQAV 198
            +N AI Y+G K NLVDTPGHADFGGEVERILNMVDG+LLVVDSVEGPKPQTRFVLKKALELGL+AV
Sbjct:  104 KNAAIDYKGVKVNLVDTPGHADFGGEVERILNMVDGVLLVVDSVEGPKPQTRFVLKKALELGLKAV 169
[Close]
BLAST of mRNA_S-dermatodea_contig8519.16687.1 vs. uniprot
Match: A0A0G4EBI8_VITBC (Tr-type G domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EBI8_VITBC)

HSP 1 Score: 118 bits (295), Expect = 2.020e-29
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 QNCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQTRFVLKKALELGLQAV 198
            +N AI Y+GTK NLVDTPGHADFGGEVERI+NMVDG+LLVVDSVEGPKPQTRFVLKKALE G +AV
Sbjct:  134 KNTAINYKGTKINLVDTPGHADFGGEVERIMNMVDGVLLVVDSVEGPKPQTRFVLKKALEAGCEAV 199
[Close]
BLAST of mRNA_S-dermatodea_contig8519.16687.1 vs. uniprot
Match: A0A7X7CX27_9BURK (GTP-binding protein (Fragment) n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A7X7CX27_9BURK)

HSP 1 Score: 108 bits (270), Expect = 2.090e-28
Identity = 47/66 (71.21%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 QNCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQTRFVLKKALELGLQAV 198
            +NCA++YQGT+ N+VDTPGHADFGGEVER L+MVDG+LL+VD+V+GP PQTRFV +KAL LGL+ +
Sbjct:   67 KNCAVEYQGTRINIVDTPGHADFGGEVERALSMVDGVLLLVDAVDGPMPQTRFVTRKALALGLRPI 132
[Close]
BLAST of mRNA_S-dermatodea_contig8519.16687.1 vs. uniprot
Match: A0A534TU16_9DELT (GTP-binding protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534TU16_9DELT)

HSP 1 Score: 107 bits (268), Expect = 4.420e-28
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 QNCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQTRFVLKKALELGLQAV 198
            +N A+ Y+G K N+VDTPGHADFGGEVER L MVDGILL+VD+ EGP PQTRFVLKKALELGL AV
Sbjct:   75 KNTAVTYRGVKINIVDTPGHADFGGEVERTLTMVDGILLIVDASEGPLPQTRFVLKKALELGLPAV 140
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8519.16687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X2KU57_SCYLO4.870e-3598.48TypA/BipA GTP binding protein n=1 Tax=Scytosiphon ... [more]
A0A836CE33_9STRA8.570e-3493.94PBipA, plastid GTPase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S3GZ45_9STRA6.220e-3280.30Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
T1BB85_9ZZZZ1.380e-3074.24Protein synthesis factor, GTP-binding domain prote... [more]
F0XW47_AURAN1.530e-3086.36Tr-type G domain-containing protein n=1 Tax=Aureoc... [more]
A0A6H5KYY6_9PHAE3.130e-3090.91Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A8J2WJI0_9STRA4.010e-3087.88Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0G4EBI8_VITBC2.020e-2984.85Tr-type G domain-containing protein n=2 Tax=Vitrel... [more]
A0A7X7CX27_9BURK2.090e-2871.21GTP-binding protein (Fragment) n=1 Tax=Burkholderi... [more]
A0A534TU16_9DELT4.420e-2877.27GTP-binding protein (Fragment) n=1 Tax=Deltaproteo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8519contigS-dermatodea_contig8519:4062..5127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue9.8e-26
Seed eggNOG ortholog44056.XP_009032365.1
KEGG koko:K06207
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006414,GO:0006417,GO:0006448,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009507,GO:0009536,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019222,GO:0019538,GO:0022613,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0032268,GO:0032270,GO:0034248,GO:0034250,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042802,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0045901,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:2000112
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0481@1,KOG0462@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925348.7799902-CDS-S-dermatodea_contig8519:4061..41901622925348.7799902-CDS-S-dermatodea_contig8519:4061..4190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8519 4062..4190 +
1694079872.984429-CDS-S-dermatodea_contig8519:4061..41901694079872.984429-CDS-S-dermatodea_contig8519:4061..4190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8519 4062..4190 +
1622925348.790754-CDS-S-dermatodea_contig8519:5058..51271622925348.790754-CDS-S-dermatodea_contig8519:5058..5127Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8519 5059..5127 +
1694079872.9980514-CDS-S-dermatodea_contig8519:5058..51271694079872.9980514-CDS-S-dermatodea_contig8519:5058..5127Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8519 5059..5127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8519.16687.1prot_S-dermatodea_contig8519.16687.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8519 4062..5127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8519.16687.1

>prot_S-dermatodea_contig8519.16687.1 ID=prot_S-dermatodea_contig8519.16687.1|Name=mRNA_S-dermatodea_contig8519.16687.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=66bp
QNCAIKYQGTKFNLVDTPGHADFGGEVERILNMVDGILLVVDSVEGPKPQ
TRFVLKKALELGLQAV
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mRNA from alignment at S-dermatodea_contig8519:4062..5127+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8519.16687.1 ID=mRNA_S-dermatodea_contig8519.16687.1|Name=mRNA_S-dermatodea_contig8519.16687.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1066bp|location=Sequence derived from alignment at S-dermatodea_contig8519:4062..5127+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGAATTGCGCCATCAAGTACCAAGGTACCAAGTTCAACTTGGTTGATAC
TCCAGGACACGCAGATTTCGGAGGAGAGGTGGAGAGAATTCTGAACATGG
TGGATGGCATCTTGCTCGTCGTTGATTCGGTGAGAGGCGTCACTCAGGAC
CCATGCGCGTACGACTGGACTTATGATCGTGCCGTGCACACACGATGTAG
GCGTATCAACCTTATGAAACGGTGAAATATTTTGCTTTCCACGCACTCTG
CAAGGAAAAGCACATTATATACAGGATATGTACACGAGGTAGTTCCACAT
GCGGCATCGAAAAATTCGAGTCTGGTCATTGTCCGCCCTCAAATAACACT
ATTAATAGGCAAGTAATAGCTCAATCGGTTGTTTATCTATGTTCCTTGTC
CAGATCGTGAACGCATTTTAGTCGCGCGTAGGTCTCGATTTGCCCATCTA
CATCAGGCATTGTATTACCAAGGAAGGCACTTAACATCCAGTATAATTAA
AACGGTCAGTTCCACATGCGGCATCGTAAACTTACCGGCGGGCAGAGTGA
CCTAACGGGAAACTAAGCAATTGATAGCTCCATCGGTTCGTTACCTACCT
TCCTTATTCATATCGCGAACGTATCTAAAAAATCTCATAATTTAGATGGG
CAAATCGAGGGCTACGCGTGGCTCAATTACGTTCGCGATCCGAATAAGGA
AGTAGATAGCGAACCGATGGGCCTATAAATTTATTTTTTAGCGCGTACCG
ATCAGAGGCAAGTTTTGCGATGCCGCATGTGAAACTACCTTGTTTTATTA
TTCTGGAGTTAATCTGCTTTTCCTCACAGAGAGCGTAGGATGCAAAATAA
TTCACCGTTTTTTTTCATTGTTGATGCGCGTATTTCGTGTGTGCACGGCA
CCCTTAATACCTCGTTTAAACCTCCTCTCTTCGGCGGGCTACTAGAAGAT
AGGCCCGATATCGTGTGTTTCTTGTATTTTTCCCTATTTTTTCCCAGGTG
GAGGGCCCCAAACCACAAACTCGCTTTGTTTTGAAAAAAGCGTTGGAGCT
CGGCCTTCAGGCTGTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8519:4062..5127+

>mRNA_S-dermatodea_contig8519.16687.1 ID=mRNA_S-dermatodea_contig8519.16687.1|Name=mRNA_S-dermatodea_contig8519.16687.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at S-dermatodea_contig8519:4062..5127+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGAATTGCGCCATCAAGTACCAAGGTACCAAGTTCAACTTGGTTGATAC
TCCAGGACACGCAGATTTCGGAGGAGAGGTGGAGAGAATTCTGAACATGG
TGGATGGCATCTTGCTCGTCGTTGATTCGCAGAATTGCGCCATCAAGTAC
CAAGGTACCAAGTTCAACTTGGTTGATACTCCAGGACACGCAGATTTCGG
AGGAGAGGTGGAGAGAATTCTGAACATGGTGGATGGCATCTTGCTCGTCG
TTGATTCGGTGGAGGGCCCCAAACCACAAACTCGCTTTGTTTTGAAAAAA
GCGTTGGAGCTCGGCCTTCAGGCTGTTGTGGAGGGCCCCAAACCACAAAC
TCGCTTTGTTTTGAAAAAAGCGTTGGAGCTCGGCCTTCAGGCTGTT
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