mRNA_S-dermatodea_contig8517.16686.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8517.16686.1
Unique NamemRNA_S-dermatodea_contig8517.16686.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8517.16686.1 vs. uniprot
Match: D8LCL7_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCL7_ECTSI)

HSP 1 Score: 403 bits (1035), Expect = 2.310e-135
Identity = 227/338 (67.16%), Postives = 250/338 (73.96%), Query Frame = 1 
Query:    1 MATRVELSVGGTTDVPSLADQIKRFQPRVFSNVESTSRVFDRSAKDNPAREPLTHKCVRVIVENFERLPAHDAAGGIELCNGEADSFDG---------LAGPESRGASAGGAQYSNSWGLANGDPGLEGSFPATGEGTDEGEEGEGLKEGQEQQ---RPREPRAIPAKFLQAISAGLSTSLDPKVGALYVFDENYWKRRCVEQLGRQSCQIAEHGLTWKQLFFEANTNFAVDRWRQAHVSDQLETFDAQNKKFDDLLEFLASCQEYVFSLRIRQLLAHPDMRAVCAVLPNLTMLDVTYGVNSIGMKYERMLFGMKISDASCLAKAVQATDTLASLVLQ 978
            MATR ELSVGGTT+VPSLADQIKRFQPRVFSN ES SRVFDRSAKDNPARE LT KCV+VIV+NFERLPAHDA GG  +   + D  +G                   A  A+ +++   A GD G  G          EGE G+   EG ++Q   + +E R IPAKFLQ ISAGLST LDPKVGALYVFDENYWKRRCVE+LG Q+CQIAEHGLTWKQLFFEA            +VS QLETFDAQ + FD LLEFLASCQEYVF+LRIRQLLAHPDMRAVC VL NLTMLDVTY VNSIGMKYERMLFGMKISDA+CLA A+QAT T+ASLVLQ
Sbjct:    1 MATRGELSVGGTTNVPSLADQIKRFQPRVFSNTESASRVFDRSAKDNPAREALTIKCVKVIVDNFERLPAHDATGGFNVGYRKNDDENGDXXXXXXXXXXXXXXXXVDASAAERTDT---AGGDAGFGGMV--------EGEGGDTKLEGDDEQPHPQQQEGRVIPAKFLQLISAGLSTDLDPKVGALYVFDENYWKRRCVEKLGWQNCQIAEHGLTWKQLFFEA------------YVSTQLETFDAQKETFDHLLEFLASCQEYVFNLRIRQLLAHPDMRAVCEVLQNLTMLDVTYSVNSIGMKYERMLFGMKISDANCLANAIQATQTMASLVLQ 315
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BLAST of mRNA_S-dermatodea_contig8517.16686.1 vs. uniprot
Match: A0A835Z8G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G8_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.210e-74
Identity = 140/320 (43.75%), Postives = 171/320 (53.44%), Query Frame = 1 
Query:   19 LSVGGTTDVPSLADQIKRFQPRVFSNVESTSRVFDRSAKDNPAREPLTHKCVRVIVENFERLPAHDAAGGIELCNGEADSFDGLAGPESRGASAGGAQYSNSWGLANGDPGLEGSFPATGEGTDEGEEGEGLKEGQEQQRPREPRAIPAKFLQAISAGLSTSLDPKVGALYVFDENYWKRRCVEQLGRQSCQIAEHGLTWKQLFFEANTNFAVDRWRQAHVSDQLETFDAQNKKFDDLLEFLASCQEYVFSLRIRQLLAHPDMRAVCAVLPNLTMLDVTYGVNSIGMKYERMLFGMKISDASCLAKAVQATDTLASLVLQ 978
            L+VGGTTDV SL DQ++RF PR F      +  F R A D  A+E L+HKCVR IV+NFER+P ++                                                                                +PAKFL AI+  LSTSLDP+V ALYVFDENYWKRRCVEQLG  +CQ+ EHGLTWKQLFFE             +V+  +E F A     D LL+ L SCQ+YVF+L++ Q+L H DM  VCA LPNL  LD+TYGV +IGMKYERML GMKISDA+ LA+A+ A   L +L L+
Sbjct:    3 LTVGGTTDVSSLKDQVQRFVPRKFEAPPEGTSAFLRPALDGLAKEQLSHKCVRTIVDNFERIPVYNG-------------------------------------------------------------------------------VPAKFLSAITTNLSTSLDPQVAALYVFDENYWKRRCVEQLGWSACQLIEHGLTWKQLFFEN------------YVARSIEAFKAPPPPGDALLQLLRSCQDYVFTLQVGQMLGHLDMERVCACLPNLACLDLTYGVRNIGMKYERMLLGMKISDAAALARALPAAPCLTTLALR 231
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BLAST of mRNA_S-dermatodea_contig8517.16686.1 vs. uniprot
Match: A0A7S2E3F2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E3F2_9STRA)

HSP 1 Score: 167 bits (424), Expect = 7.500e-45
Identity = 85/189 (44.97%), Postives = 117/189 (61.90%), Query Frame = 1 
Query:  457 IPAKFLQAISAGLSTSLDPKVGALYVFDENYWKRRCVEQLGRQSCQIAEHGLTWKQLFFEANTNFAVDRWRQAHVSDQLETFDAQNKK---------------FDDLLEFLASCQEYVFSLRIRQLLAHPDMRAVCAVLPNLTMLDVTYGVNSIGMKYERMLFGMKISDASCLAKAVQATDTLASLVLQ 978
            IPA+ ++ I A L   LDP++ A+ VFDENYWKR C+E+ G   C + EHGLTWK+LFFE             +  + LE+  A   K                D++LE L  CQ+Y+F+L ++QL +HPDM  V A+LPNL+ L+++YGV   GM YERM+FGMKISDA+ L++A+  T  L +LVLQ
Sbjct:   33 IPAEHMREIVARLPVELDPRITAVSVFDENYWKRCCIERFGWHHCHLVEHGLTWKRLFFET------------YAQECLESLQADEGKEXXXXXXXXXXXEDPLDEVLELLKVCQDYIFTLTVKQLPSHPDMERVLALLPNLSKLELSYGVGKCGMNYERMMFGMKISDANHLSRALMVTPNLTTLVLQ 209
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BLAST of mRNA_S-dermatodea_contig8517.16686.1 vs. uniprot
Match: A0A7R9UD69_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD69_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.140e-44
Identity = 82/173 (47.40%), Postives = 108/173 (62.43%), Query Frame = 1 
Query:  457 IPAKFLQAISAGLSTSLDPKVGALYVFDENYWKRRCVEQLGRQSCQIAEHGLTWKQLFFEANTNFAVDRWRQAHVSDQLETFDAQNKKFDDLLEFLASCQEYVFSLRIRQLLAHPDMRAVCAVLPNLTMLDVTYGVNSIGMKYERMLFGMKISDASCLAKAVQATDTLASLVL 975
            IP+   Q  ++ L T+++P V A Y+F E YWKRRC  +    +C+I EHGL WKQL+FE             H  + LE +D +++  + LL  LA C EY+F+L   QLL HPDM  VCA+ PNL  L + YGV   GM YER+LFGMKISDA  L K ++ATDTL +L+L
Sbjct:   75 IPSTHAQLFTSQLPTTINPIVAAQYIFSEGYWKRRCASKYAWHNCRIQEHGLMWKQLYFET------------HAQETLEAWDDEDEPEETLLNQLAVCAEYIFTLTAHQLLGHPDMSRVCALFPNLCRLRIRYGVRKTGMDYERILFGMKISDAQGLTKYLKATDTLTTLIL 235
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BLAST of mRNA_S-dermatodea_contig8517.16686.1 vs. uniprot
Match: A0A8K1FGP6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGP6_PYTOL)

HSP 1 Score: 161 bits (407), Expect = 1.950e-42
Identity = 83/173 (47.98%), Postives = 111/173 (64.16%), Query Frame = 1 
Query:  457 IPAKFLQAISAGLSTSLDPKVGALYVFDENYWKRRCVEQLGRQSCQIAEHGLTWKQLFFEANTNFAVDRWRQAHVSDQLETFDAQNKKFDDLLEFLASCQEYVFSLRIRQLLAHPDMRAVCAVLPNLTMLDVTYGVNSIGMKYERMLFGMKISDASCLAKAVQATDTLASLVL 975
            +P KFL  + + L   +D  + A  + DENYWKR C+ +   ++ QI+EHGLTWKQLF E N            + D LE FD+     D+L++ + +CQEY+F+L I QLL+H D+  VC+ L NLT L +TYGV  IGMKYERMLFGMKISDA+ L+  V+ T TL +L L
Sbjct:   70 VPRKFLPEVMSRLPLDMDVCISAPNITDENYWKRCCMSKSAWKNLQISEHGLTWKQLFMEKN------------LQDMLEGFDSSTDDNDELIDVVKACQEYIFTLEIDQLLSHLDLNEVCSHLKNLTRLRLTYGVKQIGMKYERMLFGMKISDATNLSHIVKNTKTLTTLWL 230
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BLAST of mRNA_S-dermatodea_contig8517.16686.1 vs. uniprot
Match: K3WV20_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV20_GLOUD)

HSP 1 Score: 160 bits (405), Expect = 4.040e-42
Identity = 84/174 (48.28%), Postives = 111/174 (63.79%), Query Frame = 1 
Query:  454 AIPAKFLQAISAGLSTSLDPKVGALYVFDENYWKRRCVEQLGRQSCQIAEHGLTWKQLFFEANTNFAVDRWRQAHVSDQLETFDAQNKKFDDLLEFLASCQEYVFSLRIRQLLAHPDMRAVCAVLPNLTMLDVTYGVNSIGMKYERMLFGMKISDASCLAKAVQATDTLASLVL 975
            ++P KFL  + A L   L+  V A  V DENYWKR C+ +L  ++ QI +HGLTWKQLF E             H+ D LE FDA     D L++ + +CQEY+F+L I QLL+H D+  +C+ + NLT L +TYGV  +GMKYERMLFGMKISDA+ L+  V+ T TL +L L
Sbjct:   72 SVPRKFLPDVMARLPLDLNVCVSAPNVSDENYWKRCCMSKLAWKNLQIEDHGLTWKQLFLEK------------HLQDLLEDFDATTDDPDHLVDVVKACQEYIFTLEITQLLSHLDLNELCSHMKNLTRLQLTYGVKQVGMKYERMLFGMKISDATNLSHIVKNTKTLTTLWL 233
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BLAST of mRNA_S-dermatodea_contig8517.16686.1 vs. uniprot
Match: A0A6G0WXN8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXN8_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.040e-41
Identity = 83/175 (47.43%), Postives = 110/175 (62.86%), Query Frame = 1 
Query:  457 IPAKFLQAISAGLSTSLDPKVGALYVFDENYWKRRCVEQLGRQSCQIAEHGLTWKQLFFEANTNFAVDRWRQAHVSDQLETFDAQNKK--FDDLLEFLASCQEYVFSLRIRQLLAHPDMRAVCAVLPNLTMLDVTYGVNSIGMKYERMLFGMKISDASCLAKAVQATDTLASLVL 975
            IP K L  ++  L   L     A ++ DEN+WKR C+ + G  + QIA HGLTWKQL+ E N            + ++LE+FD  N    ++DLL  + +C  Y+FSL + QLL+H DM  V   LPNLT L +TYGV  IGMKYERMLFGMKISDA+ LA A+++T TL++L L
Sbjct:   69 IPTKLLPEVTLRLPLDLPLSASAPHIQDENFWKRCCLNRTGWTNLQIAHHGLTWKQLYLERN------------LQEELESFDPSNSPDTYEDLLTKVRACAPYIFSLELEQLLSHLDMHEVTLCLPNLTKLKLTYGVKQIGMKYERMLFGMKISDATALAHAIKSTSTLSTLCL 231
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BLAST of mRNA_S-dermatodea_contig8517.16686.1 vs. uniprot
Match: A0A5D6XLJ3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLJ3_9STRA)

HSP 1 Score: 157 bits (396), Expect = 8.650e-41
Identity = 86/179 (48.04%), Postives = 111/179 (62.01%), Query Frame = 1 
Query:  445 EPRA--IPAKFLQAISAGLSTSLDPKVGALYVFDENYWKRRCVEQLGRQSCQIAEHGLTWKQLFFEANTNFAVDRWRQAHVSDQLETFDAQNKKFDDLLEFLASCQEYVFSLRIRQLLAHPDMRAVCAVLPNLTMLDVTYGVNSIGMKYERMLFGMKISDASCLAKAVQATDTLASLVL 975
            +P+A  +P KF   + A L   LD  V A  V DENYWKR C+ +L  ++ QI  HGLTWKQL+ E             H+ D LE FDA     D L++ + +CQE+VFSL I QLL+H D+  +C+ L NLT L +TYGV  +GM YERMLFGMKISDA+ L+  V+ T TL +L L
Sbjct:   69 DPKAQNVPRKFFPDVMARLPLDLDVCVSAPTVSDENYWKRCCMSKLAWRNLQIEAHGLTWKQLYLEK------------HLQDVLEDFDAGADDTDRLVDVVKACQEFVFSLEIAQLLSHVDLNELCSHLKNLTRLQLTYGVKQVGMNYERMLFGMKISDATNLSHIVKNTKTLTALWL 235
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BLAST of mRNA_S-dermatodea_contig8517.16686.1 vs. uniprot
Match: A0A2D4C6H8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6H8_PYTIN)

HSP 1 Score: 156 bits (395), Expect = 1.210e-40
Identity = 83/173 (47.98%), Postives = 106/173 (61.27%), Query Frame = 1 
Query:  457 IPAKFLQAISAGLSTSLDPKVGALYVFDENYWKRRCVEQLGRQSCQIAEHGLTWKQLFFEANTNFAVDRWRQAHVSDQLETFDAQNKKFDDLLEFLASCQEYVFSLRIRQLLAHPDMRAVCAVLPNLTMLDVTYGVNSIGMKYERMLFGMKISDASCLAKAVQATDTLASLVL 975
            +P KFL  + A L   +D  V A  + DENYWKR C      ++ QI +HGLTWKQ++ E             H+ D LE FDA     D L++ + +CQE +F+L I QLL+H D+  +C  L NLT L +TYGV SIGMKYERMLFGMKISDA+ L+  V+ T TL SL L
Sbjct:   67 VPTKFLPEVMARLPLDMDVCVSAPNITDENYWKRCCKHNSAWKNLQIQDHGLTWKQMYLEK------------HLQDLLEGFDANADDIDRLVDIVKACQELIFTLEIDQLLSHLDLNEICVHLKNLTRLRLTYGVKSIGMKYERMLFGMKISDATNLSHIVKNTKTLTSLWL 227
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BLAST of mRNA_S-dermatodea_contig8517.16686.1 vs. uniprot
Match: A0A485LRU7_9STRA (Aste57867_24942 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRU7_9STRA)

HSP 1 Score: 155 bits (391), Expect = 6.120e-40
Identity = 105/330 (31.82%), Postives = 153/330 (46.36%), Query Frame = 1 
Query:   22 SVGGTTDVPSLADQIKRFQPRVFSNVESTSRVFDRSAKDNPAREPLTHKCVRVIVENFERLPAHDAAGGIELCNGEADSFDGLAGPESRGASAGGAQYSNSWGLANGDPGLEGSFPATGEGTDEGEEGEGLKEGQEQQRPREPRAIPAKFLQAISAGLSTSLDPKVGALYVFDENYWKRRCVEQLGRQSCQIAEHGLTWKQLFF---------EANTNFAVDRWRQAHVSDQLETFDAQNKK---FDDLLEFLASCQEYVFSLRIRQLLAHPDMRAVCAVLPNLTMLDVTYGVNSIGMKYERMLFGMKISDASCLAKAVQATDTLASLVL 975
            SVG TT V SL+DQ+K+++PR+  + +  S    R A      + L   C++VI E F                 +A+  +G                                                               IP KFL  ++  L  +L     A ++ DEN+WKR C+ + G  + QIA+HGLTWKQL+          E     A +R    ++ ++LE FD  +     + +LL  + +C  ++FSL I QLL+H D+  V + LPNLT L +TYGV +IGMKYERMLFGMKISDA+ L+ A++ T TL++L L
Sbjct:    6 SVGATTAVCSLSDQVKKYRPRLIQDEKDASGNQSRKALPKREIDSLVIMCIKVITERFST---------------KANPMEG---------------------------------------------------------------IPTKFLPDVTLRLPLTLHLTATAPHIADENFWKRSCLNRAGWTNLQIAQHGLTWKQLYLGTYSSIHRLEGGLTVATER----NLQEELEAFDPTHTDAAPYAELLTKIRACAPHIFSLEIDQLLSHLDLHEVTSCLPNLTKLKLTYGVKNIGMKYERMLFGMKISDATSLSHAIKTTTTLSTLQL 253
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8517.16686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCL7_ECTSI2.310e-13567.16Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
A0A835Z8G8_9STRA2.210e-7443.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2E3F2_9STRA7.500e-4544.97Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9UD69_9STRA2.140e-4447.40Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8K1FGP6_PYTOL1.950e-4247.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WV20_GLOUD4.040e-4248.28Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0WXN8_9STRA1.040e-4147.43Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A5D6XLJ3_9STRA8.650e-4148.04Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4C6H8_PYTIN1.210e-4047.98Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A485LRU7_9STRA6.120e-4031.82Aste57867_24942 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8517contigS-dermatodea_contig8517:219..6763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.1
Seed ortholog evalue2.4e-109
Seed eggNOG ortholog2880.D8LCL7
KEGG koko:K20865
KEGG Pathwayko04621,map04621
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-03_002410.1
Exons6
Model size978
Cds size978
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8517.16686.1prot_S-dermatodea_contig8517.16686.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8517 219..6763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925348.6793823-CDS-S-dermatodea_contig8517:218..3531622925348.6793823-CDS-S-dermatodea_contig8517:218..353Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8517 219..353 -
1694079872.9191089-CDS-S-dermatodea_contig8517:218..3531694079872.9191089-CDS-S-dermatodea_contig8517:218..353Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8517 219..353 -
1622925348.6962032-CDS-S-dermatodea_contig8517:1165..12521622925348.6962032-CDS-S-dermatodea_contig8517:1165..1252Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8517 1166..1252 -
1694079872.9310615-CDS-S-dermatodea_contig8517:1165..12521694079872.9310615-CDS-S-dermatodea_contig8517:1165..1252Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8517 1166..1252 -
1622925348.711732-CDS-S-dermatodea_contig8517:2138..22541622925348.711732-CDS-S-dermatodea_contig8517:2138..2254Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8517 2139..2254 -
1694079872.9398282-CDS-S-dermatodea_contig8517:2138..22541694079872.9398282-CDS-S-dermatodea_contig8517:2138..2254Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8517 2139..2254 -
1622925348.7236197-CDS-S-dermatodea_contig8517:2689..28131622925348.7236197-CDS-S-dermatodea_contig8517:2689..2813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8517 2690..2813 -
1694079872.9486012-CDS-S-dermatodea_contig8517:2689..28131694079872.9486012-CDS-S-dermatodea_contig8517:2689..2813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8517 2690..2813 -
1622925348.7341852-CDS-S-dermatodea_contig8517:3717..40981622925348.7341852-CDS-S-dermatodea_contig8517:3717..4098Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8517 3718..4098 -
1694079872.9623373-CDS-S-dermatodea_contig8517:3717..40981694079872.9623373-CDS-S-dermatodea_contig8517:3717..4098Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8517 3718..4098 -
1622925348.748024-CDS-S-dermatodea_contig8517:6628..67631622925348.748024-CDS-S-dermatodea_contig8517:6628..6763Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8517 6629..6763 -
1694079872.9735494-CDS-S-dermatodea_contig8517:6628..67631694079872.9735494-CDS-S-dermatodea_contig8517:6628..6763Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8517 6629..6763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8517.16686.1

>prot_S-dermatodea_contig8517.16686.1 ID=prot_S-dermatodea_contig8517.16686.1|Name=mRNA_S-dermatodea_contig8517.16686.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=326bp
MATRVELSVGGTTDVPSLADQIKRFQPRVFSNVESTSRVFDRSAKDNPAR
EPLTHKCVRVIVENFERLPAHDAAGGIELCNGEADSFDGLAGPESRGASA
GGAQYSNSWGLANGDPGLEGSFPATGEGTDEGEEGEGLKEGQEQQRPREP
RAIPAKFLQAISAGLSTSLDPKVGALYVFDENYWKRRCVEQLGRQSCQIA
EHGLTWKQLFFEANTNFAVDRWRQAHVSDQLETFDAQNKKFDDLLEFLAS
CQEYVFSLRIRQLLAHPDMRAVCAVLPNLTMLDVTYGVNSIGMKYERMLF
GMKISDASCLAKAVQATDTLASLVLQ
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mRNA from alignment at S-dermatodea_contig8517:219..6763-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8517.16686.1 ID=mRNA_S-dermatodea_contig8517.16686.1|Name=mRNA_S-dermatodea_contig8517.16686.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6545bp|location=Sequence derived from alignment at S-dermatodea_contig8517:219..6763- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGACACGTGTGGAGTTATCTGTTGGCGGTACCACGGACGTACCCTC
CCTGGCGGACCAGATCAAGCGATTTCAGCCTAGGGTATTCAGCAACGTCG
AAAGTACTTCGAGGGTGTTCGATCGCTCGGCTAAGGTGAGTTACGTCTGC
TTTGGCAGTTGGTTAAAACGTGTGCATCAGCTGCACACGCACGTGTGAAT
GTTGGGAGACGCTGGGCAGACGAACGAACACCGCCAGTCTGCCATCGGTC
AGATGTTTACCGCTTTTATCTTGTACCCAGTCGTCATGTGGACAACAAGT
TGTACCAGGTAGTCCGTATGCTAGTCGCAAAGGATCCTCCCACCTCTCTC
CCCGGTTGGGTTTTTGCCACGCCTAGGTGTCAGCTAGGCCACTCAGCAAC
CACCCAGCAAGCAGTTGTTCGTCAAAGTATGTTTACTCGTGTCCTCCCAC
TTCCGTGCCTGAGGTTGAGCCAAGAATAAACAGGAATCCACGCCAGACAG
TAGTAACTTTATGTGTTCTGTTTCTAAAACAAAACTGATGGAAGATGCGT
GCGTCACGGTAGATCCACACTCACTCCAGAGCACAATTGCATTATGATAC
TGGTACATTTTAACGTATCAGGCTTCGTAGCTGCTATCATATGATTCATA
GTCGGACATATCAAAATGGACGCCAAACGCAAGACGAAAGATCGCGCGTA
ACCCCTTTGGGACCTGAGTCCGTTGCGGCGACGAACGCCGCGGGTCACTT
CGGTTATATCGCGGTGACTGGTGGACGCACAAGTGCACTATTAATAGCGT
TCATGGACGCTAAGCAAGCGGGGAAGGTACAGAGTACATAAATAATCGGC
GAGTAGTCACGGTCCGGTCCCGGTTCCAGTCAAACACGGTATGATGCAAG
TACACTGACGGACGACCCTGAAAACAGGCTCAGTGTCAAATACTGTAAGG
GTTATTTGGTGCTGACATCTCGTGCGTGCCTACATGAGGCCGTAGGCACG
GTACCGATCCAACATCGCCAGGACGCTTGCAGTCCTCGCACCTGCGATGG
TGTCCTTGAGGAACAATTATGTTCTGCTCATAGCAACATACAATGCCAAT
AAATAGTAGACGTACAAAAGTATTTGCTGAAGTTCCAAGGATAGCTCTAT
ACTTGTAGCCGTCTTTCTCGGAACTGATGCACCTTTTCGTGCCCCCTCGG
TTTCCAAACCTTGTCCATAATGACAACCATGCACAGCTGCACATGTGCAT
GTACCGTGTGGGTGGAACAAACCTACTGTACACGTATACGGTGCCAATTT
CGTATAATAGATGATGCATTAACGAGAGTTGATCTCGAGGCGTGCACAGC
AGCAATATCCTGCGGATTGGGGCTACATGGTACACGGACCTTCGTCACGG
GCGCCATCAGATTCAGTGTTTTTACACCTCCCCTCGAGCACATGCTTTTC
CGTACAAATACCTGATGTCGTATCGCCTGTACTATTGTAAGATACGTTGT
GTGCGATCAGGAATCGTTAAAAAGCACACTCTCGAGGACCAGAATATGTG
CGGTTTCCCTCTTTCACGTATGTACATATCGAATAATGCGTCAGTCAGAG
AAAAGCCCGTGCTGCCTTCAGAAGATACCACCGTCTCGTGTGTATATAGA
CCGGTTGTGCCTGGGGAGAATAAATACTCCCTTAAAACTACGACAATCTA
CTCAATGTGACCATACCTATCGACTTTTTTCGCGGCTGGGACGAAGTTTG
CGCAGGTTTGTACCAGCTTTGCATGGCATTTTGCGCTTTAACGTTGTTCG
TGCAGCCACTGAAATGCCAAGAGTTCGGGAGATGCAGTGTTCGTCCCCTT
TTCCGCTCGAAGTGTGTTTCTAACCCAGCAATAACAGTCGGCGTTATTGT
GCTGTGCATAAAACAAGCAAAAATCTCCCTCTTTTATCTTATGTAATATG
GGCTTTTGATCGCAAAAATGGCACAGGGCAGTTCTAAGGTATGCATCACA
GCGCTAGACTCCAGTGTAAATCGCATCGTCATGGACAGTTTGGATAATAC
TGCTGTACACTCAGGGATTATGTATGTCAGGCTCTTATATACGCTCTTCG
CCCCAGTAAAAGAACGGAGCACAACTAGCAGTTCCTACCTCCAGCGCTGG
CCACCCGCAGTCTGCAACAGGCACGGTGGAGGGAGAATGCCGCACGCACG
AAAACGCGACATGCAACGGGTGTTGTAGGAATACCGCTGAGCTGAAGGAT
ATATAAAGTCGCCCAACACGAACAACGGACGTCAAATCATGCATATAACC
TCCGTGAAGATCCCTCTGCGCTATAGAAGGAGAGAATCCACGCCATGTGG
GCTCAAAGCCACGCAGGTTTCATGGTGTCGTTCGGATGATGAAGCCACAC
AAAACGCCGCATCCATGGAAGCAACGAATGACCCCTTCGCGCGGCGAAGA
GTCGTTATATGAGAAAAGCTACCCCTCTCTCGGCCGTAGATTTCACGGGT
CGGTCCGGCTGTTTTTTTCATGGCCCGAAGTCATCCTACCTTAACTTCCG
GTCACGGTTTGTCTTGGTTATTGTGTGGAACGCTCAGCGCTGTATACGCT
TCACCTGCTCCCCCACTAACGCGGCCGTTCTTCTGACGCGCCCGTTCTTC
TCGTTCGCCATCCAGGACAACCCAGCGAGGGAGCCGCTGACCCATAAATG
CGTAAGGGTGATCGTCGAGAACTTCGAGCGCCTACCAGCACACGACGCCG
CGGGAGGCATCGAGCTATGCAACGGCGAGGCCGATAGCTTCGATGGCCTG
GCAGGCCCCGAAAGCAGGGGCGCTAGTGCGGGAGGTGCTCAGTACAGCAA
TAGTTGGGGCCTTGCAAACGGCGACCCAGGGTTGGAAGGGAGTTTTCCCG
CTACAGGAGAAGGAACGGATGAGGGAGAAGAGGGAGAGGGGTTGAAGGAA
GGGCAAGAGCAGCAGCGACCGAGAGAACCGCGAGCGATTCCCGCAAAGTT
TTTGCAGGCGATAAGCGCGGGTCTTAGCACCAGTCTAGATCCTAAGGTCG
GGGGGAGAACTGCAGCACAAACTAGTGGGGGCGTTTTTAGTTTTTAGTTT
TAGGGGAGGCGTTACGTGTGGCTTGTACATCCCGATGCACAATGCTACAG
CACCTGGGGCTTGGGCCTGCACGGTATGTATATAAGTGCACTGAGCATAG
TATCGTAGGGCAGAAGGGTATGCCGGATGGCTCACCTTCGATTGCCAGCG
ACTTTCTCGACCCTCCAAGGTGGCGGAAGCAAGCGACGAATCACGCTCCA
AGTGCGACGCTTAAACCATGGCGAAGCTATAGTGCGCCCGTCATGCCAGA
AGGCAGTACAGTCATGTTAAAGTCCAATTCAACCGCCTGAGGTACAACAA
ACCCATGCCGTCCGTTCGAGCGCGGTACCACGTGTGCCAGGGTTAGGGCT
GCGCTTCGTTGTGTGTGTCGTCTAGGGTAGAGTTGTGGGTGGCGAGTGAG
ATTGCGCACACAACCCCGACGAAGAGTGTGATTGTTCAGCTACCAGGCGG
TGATTTCTGTATCATGCCCGGCGGCTGCCAAGCTTGCCGTGGTGGCCATA
CCCAGTAAAAGCTGATGTTGTGACTCACTATCGTATTTTGTAGGTCAGCA
ATCACACACCGTTGCGGTACCATCGTGTACAGGACTGGTTTGATAACGAT
ACAATATTTAGATGAGGGCGCATCTACTCCTGAGAACATGGCTGACAACA
ATTAACCCAGTGTAGCCTCAGTATCGCTTCTGGGTGTATTGCCAAAACTT
TGGTGGTATTGAAGTTCCTTGCAGGGGTTGTGCACAATGCTCCTACATCA
CGCTCCTACCGCAGCGACCCCCTCCAGAACCGGTGCGTTACGCGTGTTGT
ATTTGCTATTAAAATACATACCCGCCGACATTTCCACTGGTGTTCCGAAG
GTGGGAGCGTTGTACGTGTTCGATGAGAACTACTGGAAGCGGCGATGCGT
GGAGCAGCTTGGTAGGCAGAGCTGTCAAATCGCGGAGCACGGCCTAACTT
GGAAACAGCTCTTCTTCGAGGCAAGTACATAGACTGCCTACCTCTTGCGA
GGCGTCCGGTTTGCAACCATGACTTGTTCGACGACTAATTATAGCGAGAG
TTGGTCCGCATGGAGTACGCAGATACGCAAAATGTGCGGCTGACGGGCTG
CGTCTCGCGGAGTACCTGAAACCTAGCTTGCGCGGTCTTGCATTTACCAC
GTTATGATTTAGTCGATGAATGGAGTGCGTACGCATCGTCCCGGGTCCCT
TTTGCCCTTACCACACACATGGGCGCTGTTGCAGCTGTAGGAGAAATAAC
CGCAAGTTCGAAATGCGATTAATTATTTGTGTAACGCTAAGAATTCATGT
GTTATGTTATATTAGTTGGAATACGTCCTGATCTAACAAGGAACGACGTT
GTTTGCATAGGCCGACCGATTTAAAGTACGAGAGCCACGCAATAACGCAA
CCAATCCAGACACGAATTTTGCCGTTGACCGGTGGCGCCAGGCTCACGTG
AGCGACCAGCTGGAGACGTTCGACGCCCAGAACAAGAAGTTTGATGATCT
CTTGGAATTCCTCGCATCATGTCAGGTAACCACATACAGCTGCACTTCTG
AGGCTTACACCAACGAGTCAAAATGTCGGCAAATGCTTCACATTCAGCAT
CAAATTATACTCCAGTACTAGCTCTCGACGACAGGGCATCACGGTCGGTA
GCAGGCGTATCCCACGCTGAACGTATGTTTCCTTCGCCCAGTTGACTCGA
TCTGAAAACCGTCAACGTTGTCTTAGGCACCATTTCGAGGGTTCGCTCCC
CATCAGACACATACGCCGTGGCCCCATAACTTCGCCCCCAGAAGCGCATA
ATTTTGTATGCAGTATGCAACGTCCGTGTGCTGGCATGGGCCAGCACGCG
AGGAGAATAAGTCCCGCGAACCAACAGCACGGAATGTACTGAGTAGGAGC
GACCAAGAAACTGGGTCTATAATGGAGCGCAAACACGACTCATCGAGGAG
TATTTGCTCAAATGAGCGGCGGGTGCAGAGCAGAAACCAGCCTCGTGCAT
AACTAACTGACACGAGCTCTGCCGAATTGTTTCACCCCGGAAAGTATCCC
CATGGAAACGAAATGGGCGTCCTCGCCATAAACGACGCGGAAAATACATT
ACACGAGGTTTGGTCCTTCTTGAATAATGAGTCTCACCGCTGGAGATATG
CAAGCGCAAGCCAATCCCAGCCTCCTTCAGTTTTACCCTTCCCACAACGC
GTCAAAACCTTCCAGGTGGTTCTAACAACACATGCATTTATCATGCCTCG
CATTTGGACCGTCTGCTAGGCCCTGCAAGGGGGCGAATTATAGCAGGCTC
TCGCCATAAAATTGGTCGTCGAGCACGCCTTTGGCTGCCCGGGTTTCGGC
ACCACGGAACACTCAGACGCTGGAAGCATTCCATTCCCTTGCCGCTCGTC
CTCTCCTGCAGGAGTACGTGTTCAGCCTCCGCATCCGGCAGCTATTGGCA
CACCCGGATATGCGGGCCGTGTGCGCCGTCCTTCCAAACCTCACAATGGT
AAGCGCCTCGAACCACACATTACTGCTTAGTGCAACACAAGCTGAGATAG
CTTCGAGTAGCACTGCACGTCGGCAGGCATCGCACAGATTCGTTGTGCGC
GTCAAATTTAGCTCGAACTGGAGCTCGAAGATGTTGGCGGCCGCTCACAC
GTATGATCGTACTCGGGCAGTATTCAACCATGTCCAGCAGAGAGGGTGTT
CCGAGAAGGCCGTTGCGCCAGGCATCGAAGGCCCACGGCCTACCGTCATA
ATACGCAGGCGTGCATCGAATTGTCCAGCCTTACCCATGTATCGGCTATT
TCGTCGTGTTCCGTGTCTATTTCGGTATGTCGCGTGGAGCCTAGCAGCAG
CGGTGATGTTTTCGCAGTGCTTCGGCCTTGCGGTTACGCACTTGCGTGTG
CAGCGTGGCATGCAGGAATGATACCCGGCCGGCGGACAGTGCCCTCTTCC
CCCCAAGTTTCCATCCCCTTACGCCAGTAAAATTGAGCCACTCGGTGGCA
GTTGTGCCGAACTTTTGGCTCGACTCGCCACAAAAATACGGCAACTTCTG
GCCCCAATGCACGGGCTCTCCCGCTACCTTTGGGTGCGGCAGCCTTTGTC
TTGAACGCTCTCTTCTGTAAGCGTTAGCGTTCAGGGCGTTTCCCCATCTG
CATGTCCCCGGCCCCTATCCCTGGGCACCATGTCCTGCATGCCATTGCTG
CACGAACGTGATTTCGTGGCTCTTTGTAGTTACGCCACGGTCGCCGTCCT
CCTCGAGTATGACACTATTCAGCCACCCTCCCCCCGCTCTCATTCGTATT
TGATGTCCAGCTTGACGTGACGTATGGCGTGAACTCTATTGGCATGAAGT
ATGAGCGCATGCTCTTCGGGATGAAGATCTCGGACGCGAGCTGCCTGGCC
AAGGCTGTCCAGGCGACCGACACACTTGCCTCCTTGGTGCTGCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8517:219..6763-

>mRNA_S-dermatodea_contig8517.16686.1 ID=mRNA_S-dermatodea_contig8517.16686.1|Name=mRNA_S-dermatodea_contig8517.16686.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1956bp|location=Sequence derived from alignment at S-dermatodea_contig8517:219..6763- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGACACGTGTGGAGTTATCTGTTGGCGGTACCACGGACGTACCCTC
CCTGGCGGACCAGATCAAGCGATTTCAGCCTAGGGTATTCAGCAACGTCG
AAAGTACTTCGAGGGTGTTCGATCGCTCGGCTAAGATGGCGACACGTGTG
GAGTTATCTGTTGGCGGTACCACGGACGTACCCTCCCTGGCGGACCAGAT
CAAGCGATTTCAGCCTAGGGTATTCAGCAACGTCGAAAGTACTTCGAGGG
TGTTCGATCGCTCGGCTAAGGACAACCCAGCGAGGGAGCCGCTGACCCAT
AAATGCGTAAGGGTGATCGTCGAGAACTTCGAGCGCCTACCAGCACACGA
CGCCGCGGGAGGCATCGAGCTATGCAACGGCGAGGCCGATAGCTTCGATG
GCCTGGCAGGCCCCGAAAGCAGGGGCGCTAGTGCGGGAGGTGCTCAGTAC
AGCAATAGTTGGGGCCTTGCAAACGGCGACCCAGGGTTGGAAGGGAGTTT
TCCCGCTACAGGAGAAGGAACGGATGAGGGAGAAGAGGGAGAGGGGTTGA
AGGAAGGGCAAGAGCAGCAGCGACCGAGAGAACCGCGAGCGATTCCCGCA
AAGTTTTTGCAGGCGATAAGCGCGGGTCTTAGCACCAGTCTAGATCCTAA
GGACAACCCAGCGAGGGAGCCGCTGACCCATAAATGCGTAAGGGTGATCG
TCGAGAACTTCGAGCGCCTACCAGCACACGACGCCGCGGGAGGCATCGAG
CTATGCAACGGCGAGGCCGATAGCTTCGATGGCCTGGCAGGCCCCGAAAG
CAGGGGCGCTAGTGCGGGAGGTGCTCAGTACAGCAATAGTTGGGGCCTTG
CAAACGGCGACCCAGGGTTGGAAGGGAGTTTTCCCGCTACAGGAGAAGGA
ACGGATGAGGGAGAAGAGGGAGAGGGGTTGAAGGAAGGGCAAGAGCAGCA
GCGACCGAGAGAACCGCGAGCGATTCCCGCAAAGTTTTTGCAGGCGATAA
GCGCGGGTCTTAGCACCAGTCTAGATCCTAAGGTGGGAGCGTTGTACGTG
TTCGATGAGAACTACTGGAAGCGGCGATGCGTGGAGCAGCTTGGTAGGCA
GAGCTGTCAAATCGCGGAGCACGGCCTAACTTGGAAACAGCTCTTCTTCG
AGGCAAGTGGGAGCGTTGTACGTGTTCGATGAGAACTACTGGAAGCGGCG
ATGCGTGGAGCAGCTTGGTAGGCAGAGCTGTCAAATCGCGGAGCACGGCC
TAACTTGGAAACAGCTCTTCTTCGAGGCAAACACGAATTTTGCCGTTGAC
CGGTGGCGCCAGGCTCACGTGAGCGACCAGCTGGAGACGTTCGACGCCCA
GAACAAGAAGTTTGATGATCTCTTGGAATTCCTCGCATCATGTCAGACAC
GAATTTTGCCGTTGACCGGTGGCGCCAGGCTCACGTGAGCGACCAGCTGG
AGACGTTCGACGCCCAGAACAAGAAGTTTGATGATCTCTTGGAATTCCTC
GCATCATGTCAGGAGTACGTGTTCAGCCTCCGCATCCGGCAGCTATTGGC
ACACCCGGATATGCGGGCCGTGTGCGCCGTCCTTCCAAACCTCACAATGG
AGTACGTGTTCAGCCTCCGCATCCGGCAGCTATTGGCACACCCGGATATG
CGGGCCGTGTGCGCCGTCCTTCCAAACCTCACAATGCTTGACGTGACGTA
TGGCGTGAACTCTATTGGCATGAAGTATGAGCGCATGCTCTTCGGGATGA
AGATCTCGGACGCGAGCTGCCTGGCCAAGGCTGTCCAGGCGACCGACACA
CTTGCCTCCTTGGTGCTGCAGCTTGACGTGACGTATGGCGTGAACTCTAT
TGGCATGAAGTATGAGCGCATGCTCTTCGGGATGAAGATCTCGGACGCGA
GCTGCCTGGCCAAGGCTGTCCAGGCGACCGACACACTTGCCTCCTTGGTG
CTGCAG
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