mRNA_S-dermatodea_contig85131.16684.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85131.16684.1
Unique NamemRNA_S-dermatodea_contig85131.16684.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig85131.16684.1 vs. uniprot
Match: D8LJL3_ECTSI (Alpha-dioxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL3_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.090e-29
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    4 HPAYPNRRTHWWDVSFVYGSDDATLARTRTHVGGRIHAGNDGVMDHRPDGVISTGDNKNSWIGVSLLQA 210
            H AY N RTHWWDVSFVYGSD+ TL RTRT  GG+I AG+DGVMDH P+G I++GDNKNSW+GVSLLQA
Sbjct:  216 HQAYRNPRTHWWDVSFVYGSDEDTLRRTRTFEGGKILAGSDGVMDHTPEGNIASGDNKNSWVGVSLLQA 284
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BLAST of mRNA_S-dermatodea_contig85131.16684.1 vs. uniprot
Match: A0A6H5KY43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY43_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.780e-27
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    4 HPAYPNRRTHWWDVSFVYGSDDATLARTRTHVGGRIHAGNDGVMDHRPDGVISTGDNKNSWIGVSLLQA 210
            H AY N RTHWWDVSFVYGSD+ T  RTRT  GG+I AG+DG+MDH P+G I++GDNKNSW+GVSLLQA
Sbjct:  216 HQAYRNPRTHWWDVSFVYGSDEETHRRTRTFEGGKILAGSDGIMDHTPEGNIASGDNKNSWVGVSLLQA 284
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BLAST of mRNA_S-dermatodea_contig85131.16684.1 vs. uniprot
Match: UPI001D022BDC (alpha-dioxygenase 1-like isoform X2 n=2 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D022BDC)

HSP 1 Score: 75.1 bits (183), Expect = 3.530e-14
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   13 YPNRRTHWWDVSFVYGSDDATLARTRTHVGGRIHAGNDGVMDHRPDGVISTGDNKNSWIGVSLLQA 210
            Y N RT WWD S VYG+++  + +TRT+V G++  G+DG++ H  +GV  +GD +N W+GVS+LQA
Sbjct:  204 YNNVRTAWWDGSAVYGNNEKQVEKTRTYVDGKLVIGDDGLLLHEENGVPLSGDVRNGWVGVSILQA 269
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BLAST of mRNA_S-dermatodea_contig85131.16684.1 vs. uniprot
Match: A0A7J6VKD5_THATH (Alpha-dioxygenase 1-like n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VKD5_THATH)

HSP 1 Score: 74.3 bits (181), Expect = 6.060e-14
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   19 NRRTHWWDVSFVYGSDDATLARTRTHVGGRIHAGNDGVMDHRPDGVISTGDNKNSWIGVSLLQA 210
            N RT WWD S +YGS++ TL++ RT+  G++    DG++ H  DGV  +GD +NSW GVS+LQA
Sbjct:   41 NIRTPWWDGSAIYGSNNKTLSKVRTYKDGKLKISKDGLLPHDEDGVAVSGDVRNSWAGVSVLQA 104
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BLAST of mRNA_S-dermatodea_contig85131.16684.1 vs. uniprot
Match: A0A804UA66_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804UA66_MAIZE)

HSP 1 Score: 74.3 bits (181), Expect = 6.480e-14
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   13 YPNRRTHWWDVSFVYGSDDATLARTRTHVGGRIHAGNDGVMDHRPDGVISTGDNKNSWIGVSLLQA 210
            Y N RT WWD S +YG++D    + RT+V G++  G+DG++ H  +GV   GD +NSW+GVS+LQA
Sbjct:  206 YYNVRTAWWDGSAIYGNNDKKAEKLRTYVDGKLVIGDDGLLLHEENGVALLGDVRNSWVGVSILQA 271
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BLAST of mRNA_S-dermatodea_contig85131.16684.1 vs. uniprot
Match: A0A843TJ13_COLES (Uncharacterized protein n=3 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TJ13_COLES)

HSP 1 Score: 74.3 bits (181), Expect = 6.680e-14
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   19 NRRTHWWDVSFVYGSDDATLARTRTHVGGRIHAGNDGVMDHRPDGVISTGDNKNSWIGVSLLQA 210
            N RT WWD S +YG+D  + +R RTHV G++  G+D ++ H  +G   +GD +NSWIGVS+LQA
Sbjct:  203 NIRTSWWDGSMIYGNDKKSGSRVRTHVDGKLKTGDDNLLLHDEEGRAVSGDVRNSWIGVSILQA 266
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BLAST of mRNA_S-dermatodea_contig85131.16684.1 vs. uniprot
Match: A0A2G5F2G1_AQUCA (Uncharacterized protein n=2 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F2G1_AQUCA)

HSP 1 Score: 74.3 bits (181), Expect = 6.680e-14
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   19 NRRTHWWDVSFVYGSDDATLARTRTHVGGRIHAGNDGVMDHRPDGVISTGDNKNSWIGVSLLQA 210
            N RT WWD S +YGS++ TL++ RT+  G++    DG++ H  DGV  +GD +NSW GVS+LQA
Sbjct:  213 NIRTPWWDGSAIYGSNNKTLSKVRTYKDGKLKISKDGLLPHDEDGVAVSGDVRNSWAGVSVLQA 276
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BLAST of mRNA_S-dermatodea_contig85131.16684.1 vs. uniprot
Match: A0A1R3H2J4_9ROSI (Uncharacterized protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3H2J4_9ROSI)

HSP 1 Score: 73.9 bits (180), Expect = 9.120e-14
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   19 NRRTHWWDVSFVYGSDDATLARTRTHVGGRIHAGNDGVMDHRPDGVISTGDNKNSWIGVSLLQA 210
            N RT WWD S +YGSD+ +L + RT + G++    DG++ H  DG+   GD +NSW GVS LQA
Sbjct:  209 NIRTPWWDGSVIYGSDETSLEKVRTFIDGKLKIAEDGLLQHDKDGIPIVGDVRNSWAGVSTLQA 272
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BLAST of mRNA_S-dermatodea_contig85131.16684.1 vs. uniprot
Match: A0A7J9F7Y5_9ROSI (Uncharacterized protein n=8 Tax=Gossypium TaxID=3633 RepID=A0A7J9F7Y5_9ROSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.230e-13
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   19 NRRTHWWDVSFVYGSDDATLARTRTHVGGRIHAGNDGVMDHRPDGVISTGDNKNSWIGVSLLQA 210
            N RTHWWD S +YGSD   L + RT V G++    DG++    DG+  +GD KNSW GVS LQA
Sbjct:   84 NIRTHWWDGSVIYGSDKERLQKVRTLVDGKLKISEDGLLQQDEDGIPISGDIKNSWAGVSTLQA 147
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BLAST of mRNA_S-dermatodea_contig85131.16684.1 vs. uniprot
Match: A0A1U8ML47_GOSHI (alpha-dioxygenase 1-like n=22 Tax=Malvoideae TaxID=214907 RepID=A0A1U8ML47_GOSHI)

HSP 1 Score: 73.6 bits (179), Expect = 1.250e-13
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   19 NRRTHWWDVSFVYGSDDATLARTRTHVGGRIHAGNDGVMDHRPDGVISTGDNKNSWIGVSLLQA 210
            N RTHWWD S +YGSD   L + RT V G++    DG++    DG+  +GD KNSW GVS LQA
Sbjct:  215 NIRTHWWDGSVIYGSDKERLQKVRTLVDGKLKISEDGLLQQDEDGIPISGDIKNSWAGVSTLQA 278
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85131.16684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJL3_ECTSI2.090e-2975.36Alpha-dioxygenase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KY43_9PHAE1.780e-2772.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001D022BDC3.530e-1448.48alpha-dioxygenase 1-like isoform X2 n=2 Tax=Tritic... [more]
A0A7J6VKD5_THATH6.060e-1450.00Alpha-dioxygenase 1-like n=1 Tax=Thalictrum thalic... [more]
A0A804UA66_MAIZE6.480e-1448.48Uncharacterized protein n=1 Tax=Zea mays TaxID=457... [more]
A0A843TJ13_COLES6.680e-1450.00Uncharacterized protein n=3 Tax=Colocasia esculent... [more]
A0A2G5F2G1_AQUCA6.680e-1450.00Uncharacterized protein n=2 Tax=Aquilegia coerulea... [more]
A0A1R3H2J4_9ROSI9.120e-1448.44Uncharacterized protein n=1 Tax=Corchorus olitoriu... [more]
A0A7J9F7Y5_9ROSI1.230e-1351.56Uncharacterized protein n=8 Tax=Gossypium TaxID=36... [more]
A0A1U8ML47_GOSHI1.250e-1351.56alpha-dioxygenase 1-like n=22 Tax=Malvoideae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85131contigS-dermatodea_contig85131:324..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue9.7e-24
Seed eggNOG ortholog2880.D8LJL3
Preferred nameDOX2
KEGG koko:K10529
KEGG Pathwayko00592,map00592
GOsGO:0000302,GO:0001101,GO:0001516,GO:0001561,GO:0001676,GO:0002376,GO:0003008,GO:0003013,GO:0003674,GO:0003824,GO:0004601,GO:0004666,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005811,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006690,GO:0006692,GO:0006693,GO:0006805,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0007275,GO:0007568,GO:0008015,GO:0008150,GO:0008152,GO:0008217,GO:0008219,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009410,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009627,GO:0009636,GO:0009719,GO:0009725,GO:0009737,GO:0009751,GO:0009814,GO:0009987,GO:0010033,GO:0010035,GO:0010150,GO:0012505,GO:0012511,GO:0014070,GO:0016020,GO:0016042,GO:0016053,GO:0016054,GO:0016209,GO:0016491,GO:0016684,GO:0016701,GO:0016702,GO:0016705,GO:0019369,GO:0019371,GO:0019395,GO:0019752,GO:0030258,GO:0031090,GO:0031984,GO:0032501,GO:0032502,GO:0032787,GO:0032870,GO:0033554,GO:0033559,GO:0033993,GO:0034440,GO:0034599,GO:0034614,GO:0035690,GO:0042175,GO:0042221,GO:0042493,GO:0042742,GO:0042759,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046394,GO:0046395,GO:0046456,GO:0046457,GO:0046677,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050832,GO:0050896,GO:0051213,GO:0051704,GO:0051707,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071229,GO:0071236,GO:0071241,GO:0071310,GO:0071407,GO:0071446,GO:0071466,GO:0071495,GO:0071704,GO:0071731,GO:0071732,GO:0072329,GO:0072330,GO:0090693,GO:0097237,GO:0097305,GO:0097366,GO:0098542,GO:0098754,GO:0098827,GO:0098869,GO:0099402,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1902609,GO:1990748
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionalpha-dioxygenase
Ec32 orthologEc-17_002430.1
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925348.5842762-CDS-S-dermatodea_contig85131:323..5331622925348.5842762-CDS-S-dermatodea_contig85131:323..533Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85131 324..533 -
1694079872.877828-CDS-S-dermatodea_contig85131:323..5331694079872.877828-CDS-S-dermatodea_contig85131:323..533Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85131 324..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85131.16684.1prot_S-dermatodea_contig85131.16684.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85131 324..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85131.16684.1

>prot_S-dermatodea_contig85131.16684.1 ID=prot_S-dermatodea_contig85131.16684.1|Name=mRNA_S-dermatodea_contig85131.16684.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=70bp
GHPAYPNRRTHWWDVSFVYGSDDATLARTRTHVGGRIHAGNDGVMDHRPD
GVISTGDNKNSWIGVSLLQA
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mRNA from alignment at S-dermatodea_contig85131:324..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85131.16684.1 ID=mRNA_S-dermatodea_contig85131.16684.1|Name=mRNA_S-dermatodea_contig85131.16684.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig85131:324..533- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCACCCGGCCTACCCCAACCGCCGCACGCACTGGTGGGACGTGTCCTT
CGTCTACGGCAGTGACGATGCGACTTTGGCGCGCACTCGCACGCATGTCG
GAGGGCGTATCCACGCTGGAAACGACGGTGTCATGGACCACAGGCCTGAC
GGAGTGATCAGCACGGGAGACAACAAGAACTCGTGGATCGGGGTTTCCCT
TCTGCAGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig85131:324..533-

>mRNA_S-dermatodea_contig85131.16684.1 ID=mRNA_S-dermatodea_contig85131.16684.1|Name=mRNA_S-dermatodea_contig85131.16684.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at S-dermatodea_contig85131:324..533- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCACCCGGCCTACCCCAACCGCCGCACGCACTGGTGGGACGTGTCCTT
CGTCTACGGCAGTGACGATGCGACTTTGGCGCGCACTCGCACGCATGTCG
GAGGGCGTATCCACGCTGGAAACGACGGTGTCATGGACCACAGGCCTGAC
GGAGTGATCAGCACGGGAGACAACAAGAACTCGTGGATCGGGGTTTCCCT
TCTGCAGGCGGGCCACCCGGCCTACCCCAACCGCCGCACGCACTGGTGGG
ACGTGTCCTTCGTCTACGGCAGTGACGATGCGACTTTGGCGCGCACTCGC
ACGCATGTCGGAGGGCGTATCCACGCTGGAAACGACGGTGTCATGGACCA
CAGGCCTGACGGAGTGATCAGCACGGGAGACAACAAGAACTCGTGGATCG
GGGTTTCCCTTCTGCAGGCG
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