mRNA_S-dermatodea_contig8509.16681.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8509.16681.1
Unique NamemRNA_S-dermatodea_contig8509.16681.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8509.16681.1 vs. uniprot
Match: A0A812Z1L7_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z1L7_SYMMI)

HSP 1 Score: 143 bits (360), Expect = 1.020e-41
Identity = 69/100 (69.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:    1 DYANTLIVGQTMRAFTDSLLISREKLSFLVDATSAPIASLSPVSSWIGFEIGLIGDALDSIEASGEDVSCYDSSAFIIFIKTIPSRFYPFFILVVQFLLI 300
            DYANTLIVGQT+R   D+L +SREKL+FLVD+T+AP+AS+SP+SSWIGFE+ LI DAL  +E  GED+SCYD SAFIIF+ TIPSRFYP F+L +Q  LI
Sbjct:   38 DYANTLIVGQTVRPIVDALGVSREKLAFLVDSTAAPVASVSPISSWIGFELSLIEDALQQLEDQGEDISCYDDSAFIIFLNTIPSRFYPMFVLSIQLFLI 137
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BLAST of mRNA_S-dermatodea_contig8509.16681.1 vs. uniprot
Match: F2UNY6_SALR5 (Na+/H+ antiporter family protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UNY6_SALR5)

HSP 1 Score: 134 bits (336), Expect = 3.150e-34
Identity = 62/102 (60.78%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:    7 ANTLIVGQTMRAFTDSLLISREKLSFLVDATSAPIASLSPVSSWIGFEIGLIGDALDSIEASGEDVSCYDSSAFIIFIKTIPSRFYPFFILVVQFLLIGEQK 312
            ANTLIVGQT+R  TD L ISREKL+FLVDATS+P+ S+SP+S+W+GFE+ LI + L  + ++GEDV+CYDSSAF+IF+KTIP R+YPF ++ +Q LL+  ++
Sbjct:  238 ANTLIVGQTVRPITDMLHISREKLAFLVDATSSPVTSVSPISTWVGFELSLIENTLRDLASTGEDVTCYDSSAFVIFVKTIPGRYYPFIMIALQLLLVIAER 339
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BLAST of mRNA_S-dermatodea_contig8509.16681.1 vs. uniprot
Match: A0A7S0BV58_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BV58_9RHOD)

HSP 1 Score: 125 bits (314), Expect = 5.020e-34
Identity = 59/104 (56.73%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:    1 DYANTLIVGQTMRAFTDSLLISREKLSFLVDATSAPIASLSPVSSWIGFEIGLIGDALDSIEASGEDVSCYDSSAFIIFIKTIPSRFYPFFILVVQFLLIGEQK 312
            DYANTLI+G TMR  +D+L +SREKL+FLVDAT+AP+AS++P+SSWIGFE+GLI + +D + ASGED+     +A+++F++TIPSRFYP  +L  QF +I  ++
Sbjct:    4 DYANTLILGNTMRFVSDALWVSREKLAFLVDATTAPVASIAPISSWIGFEVGLIQEQIDLLIASGEDLVGVSENAYLVFLETIPSRFYPIIMLFFQFFMIVARR 107
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BLAST of mRNA_S-dermatodea_contig8509.16681.1 vs. uniprot
Match: A0A7S0ZLS6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZLS6_9RHOD)

HSP 1 Score: 119 bits (298), Expect = 3.680e-29
Identity = 59/104 (56.73%), Postives = 81/104 (77.88%), Query Frame = 1 
Query:    1 DYANTLIVGQTMRAFTDSLLISREKLSFLVDATSAPIASLSPVSSWIGFEIGLIGDALDSIEASGEDVSCYDSSAFIIFIKTIPSRFYPFFILVVQFLLIGEQK 312
            DYANTLI+G TMR+  D  L+SREK +FLVDAT+APIAS++P+SSWIGFE+GLI   LD + A G++V    +SA+ +F+KTIPSR+YP F+L+  F++I   +
Sbjct:  245 DYANTLILGNTMRSVVDGYLVSREKFAFLVDATTAPIASIAPISSWIGFELGLIQAELDILSADGQNVP---TSAYDVFLKTIPSRYYPIFMLLFSFVMILSMR 345
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BLAST of mRNA_S-dermatodea_contig8509.16681.1 vs. uniprot
Match: A0A812S9W9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812S9W9_9DINO)

HSP 1 Score: 112 bits (280), Expect = 1.070e-26
Identity = 55/107 (51.40%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:    1 DYANTLIVGQTMRAFTDSLLISREKLSFLVDATSAPIASLSPVSSWIGFEIGLIGDALDSIEASGEDVSCYDS---SAFIIFIKTIPSRFYPFFILVVQFLLIGEQK 312
            DYANTLI+G TMR  +D+  +SREKL+FLVDAT+APIASL+P+SSWIGFE+GLI D L++++  G + +  ++   + + IF+ ++ SR+YP F+L+ Q  LI  Q+
Sbjct:  241 DYANTLILGNTMRGISDAFFVSREKLAFLVDATTAPIASLAPISSWIGFEVGLINDQLETLKGLGYEAALEEAGLTNGYSIFLSSLVSRYYPIFMLIFQLSLIVFQR 347
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BLAST of mRNA_S-dermatodea_contig8509.16681.1 vs. uniprot
Match: A0A5J4YVS4_PORPP (Uncharacterized protein n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVS4_PORPP)

HSP 1 Score: 112 bits (279), Expect = 1.490e-26
Identity = 58/104 (55.77%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:    1 DYANTLIVGQTMRAFTDSLLISREKLSFLVDATSAPIASLSPVSSWIGFEIGLIGDALDSIEASGEDVSCYDSSAFIIFIKTIPSRFYPFFILVVQFLLIGEQK 312
            DYANTLI+G TMR   D   ++REK + LVD T+APIAS++P+SSWIGFE+GLI D+L  +EA G +     SSA+ +FI TIPSR+YP F+L++QF+LI   +
Sbjct:  249 DYANTLILGGTMRPIADLYWVAREKFAALVDCTTAPIASIAPISSWIGFELGLIQDSLTQLEALGYEN--LPSSAYEVFINTIPSRYYPMFMLLLQFVLILSMR 350
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BLAST of mRNA_S-dermatodea_contig8509.16681.1 vs. uniprot
Match: A0A812XI41_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XI41_9DINO)

HSP 1 Score: 111 bits (277), Expect = 2.840e-26
Identity = 57/107 (53.27%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:    1 DYANTLIVGQTMRAFTDSLLISREKLSFLVDATSAPIASLSPVSSWIGFEIGLIGDALDSIEASGEDVSCYDS---SAFIIFIKTIPSRFYPFFILVVQFLLIGEQK 312
            DYANTLI+G TMR  +D+  +SREKL+FLVDAT+APIASL+P+SSWIGFE+GLI D L++++  G   +  ++   S + IF+ ++ SR+YP F+LV Q  LI  Q+
Sbjct:  700 DYANTLILGNTMRGISDAFFVSREKLAFLVDATTAPIASLAPISSWIGFEVGLINDQLETLKGLGYTDALAEAGLTSGYGIFLSSLASRYYPIFMLVFQLSLIVFQR 806
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BLAST of mRNA_S-dermatodea_contig8509.16681.1 vs. uniprot
Match: A0A1Q9CHN1_SYMMI (Uncharacterized protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CHN1_SYMMI)

HSP 1 Score: 111 bits (277), Expect = 2.920e-26
Identity = 57/107 (53.27%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:    1 DYANTLIVGQTMRAFTDSLLISREKLSFLVDATSAPIASLSPVSSWIGFEIGLIGDALDSIEASGEDVSCYDS---SAFIIFIKTIPSRFYPFFILVVQFLLIGEQK 312
            DYANTLI+G TMR  +D+  +SREKL+FLVDAT+APIASL+P+SSWIGFE+GLI D L++++  G   +  ++   S + IF+ ++ SR+YP F+LV Q  LI  Q+
Sbjct: 1994 DYANTLILGNTMRGISDAFFVSREKLAFLVDATTAPIASLAPISSWIGFEVGLINDQLETLKGLGYTDALAEAGLTSGYGIFLSSLASRYYPIFMLVFQLSLIVFQR 2100
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BLAST of mRNA_S-dermatodea_contig8509.16681.1 vs. uniprot
Match: A0A1Q9DTG3_SYMMI (Hypothetical protein n=8 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DTG3_SYMMI)

HSP 1 Score: 110 bits (276), Expect = 3.740e-26
Identity = 57/107 (53.27%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:    1 DYANTLIVGQTMRAFTDSLLISREKLSFLVDATSAPIASLSPVSSWIGFEIGLIGDALDSIEASGEDVSCYDS---SAFIIFIKTIPSRFYPFFILVVQFLLIGEQK 312
            DYANTLI+G TMR  +D+  +SREKL+FLVDAT+APIASL+P+SSWIGFE+GLI D L++++  G   +  ++   S + IF+ ++ SR+YP F+LV Q  LI  Q+
Sbjct:  241 DYANTLILGNTMRGISDAFFVSREKLAFLVDATTAPIASLAPISSWIGFEVGLINDQLETLKGLGYTDALAEAGLTSGYGIFLSSLASRYYPIFMLVFQLSLIIFQR 347
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BLAST of mRNA_S-dermatodea_contig8509.16681.1 vs. uniprot
Match: A0A5J4Z7N6_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7N6_PORPP)

HSP 1 Score: 110 bits (274), Expect = 7.090e-26
Identity = 56/104 (53.85%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:    1 DYANTLIVGQTMRAFTDSLLISREKLSFLVDATSAPIASLSPVSSWIGFEIGLIGDALDSIEASGEDVSCYDSSAFIIFIKTIPSRFYPFFILVVQFLLIGEQK 312
            DYANTLI+G TMR  +D   ++REK + LVD T+APIAS++P+SSWIGFE+GLI  +LD + A G +     SSA+ +FI TIPSR+YP ++L++QF+LI   +
Sbjct:  259 DYANTLILGGTMRPISDMYWVAREKFAALVDCTTAPIASIAPISSWIGFELGLIQSSLDQLAALGYEG--LPSSAYDVFINTIPSRYYPMYMLLLQFILILSMR 360
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8509.16681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812Z1L7_SYMMI1.020e-4169.00Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
F2UNY6_SALR53.150e-3460.78Na+/H+ antiporter family protein n=1 Tax=Salpingoe... [more]
A0A7S0BV58_9RHOD5.020e-3456.73Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S0ZLS6_9RHOD3.680e-2956.73Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A812S9W9_9DINO1.070e-2651.40Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A5J4YVS4_PORPP1.490e-2655.77Uncharacterized protein n=2 Tax=Porphyridium purpu... [more]
A0A812XI41_9DINO2.840e-2653.27Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A1Q9CHN1_SYMMI2.920e-2653.27Uncharacterized protein n=1 Tax=Symbiodinium micro... [more]
A0A1Q9DTG3_SYMMI3.740e-2653.27Hypothetical protein n=8 Tax=Symbiodinium TaxID=29... [more]
A0A5J4Z7N6_PORPP7.090e-2653.85Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8509contigS-dermatodea_contig8509:8862..9173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue3e-29
Seed eggNOG ortholog946362.XP_004989110.1
Preferred nameNCF2
KEGG koko:K08010,ko:K21432
KEGG Pathwayko04145,ko04380,ko04670,ko05140,ko05418,map04145,map04380,map04670,map05140,map05418
GOsGO:0000323,GO:0001669,GO:0002237,GO:0002376,GO:0003008,GO:0003013,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005764,GO:0005767,GO:0005773,GO:0005829,GO:0005886,GO:0005887,GO:0006091,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006742,GO:0006753,GO:0006793,GO:0006796,GO:0006801,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006968,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007568,GO:0008015,GO:0008022,GO:0008047,GO:0008150,GO:0008152,GO:0008217,GO:0009055,GO:0009056,GO:0009058,GO:0009109,GO:0009117,GO:0009166,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009987,GO:0010033,GO:0010310,GO:0010941,GO:0010942,GO:0012505,GO:0014070,GO:0014823,GO:0016020,GO:0016021,GO:0016176,GO:0016491,GO:0017016,GO:0017048,GO:0017124,GO:0018130,GO:0019222,GO:0019362,GO:0019364,GO:0019438,GO:0019439,GO:0019637,GO:0019899,GO:0019904,GO:0022900,GO:0023052,GO:0030139,GO:0030141,GO:0030234,GO:0031224,GO:0031226,GO:0031267,GO:0031323,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032010,GO:0032496,GO:0032501,GO:0032502,GO:0032570,GO:0032870,GO:0032991,GO:0033993,GO:0034284,GO:0034404,GO:0034405,GO:0034616,GO:0034641,GO:0034654,GO:0034655,GO:0036296,GO:0042221,GO:0042493,GO:0042554,GO:0042981,GO:0043020,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043523,GO:0043525,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045087,GO:0045335,GO:0045730,GO:0045777,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0048010,GO:0048365,GO:0048518,GO:0048522,GO:0048545,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051020,GO:0051186,GO:0051187,GO:0051193,GO:0051704,GO:0051707,GO:0051716,GO:0055086,GO:0055093,GO:0055114,GO:0060263,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070887,GO:0071310,GO:0071495,GO:0071704,GO:0071944,GO:0072524,GO:0072526,GO:0072593,GO:0097223,GO:0097708,GO:0098772,GO:0098796,GO:0098797,GO:0099503,GO:1901214,GO:1901216,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901654,GO:1901700,GO:1902494,GO:1990204,GO:2000377
EggNOG free text desc.superoxide-generating NADPH oxidase activator activity
EggNOG OGsKOG4225@1,KOG4225@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925348.290278-CDS-S-dermatodea_contig8509:8861..91731622925348.290278-CDS-S-dermatodea_contig8509:8861..9173Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8509 8862..9173 +
1694079872.6441143-CDS-S-dermatodea_contig8509:8861..91731694079872.6441143-CDS-S-dermatodea_contig8509:8861..9173Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8509 8862..9173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8509.16681.1prot_S-dermatodea_contig8509.16681.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8509 8862..9173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8509.16681.1

>prot_S-dermatodea_contig8509.16681.1 ID=prot_S-dermatodea_contig8509.16681.1|Name=mRNA_S-dermatodea_contig8509.16681.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
DYANTLIVGQTMRAFTDSLLISREKLSFLVDATSAPIASLSPVSSWIGFE
IGLIGDALDSIEASGEDVSCYDSSAFIIFIKTIPSRFYPFFILVVQFLLI
GEQK
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mRNA from alignment at S-dermatodea_contig8509:8862..9173+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8509.16681.1 ID=mRNA_S-dermatodea_contig8509.16681.1|Name=mRNA_S-dermatodea_contig8509.16681.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at S-dermatodea_contig8509:8862..9173+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATTACGCCAACACCCTGATCGTGGGGCAGACGATGCGCGCGTTCACCGA
CTCCCTCCTCATCTCCCGCGAGAAGCTGTCCTTCCTAGTGGACGCCACCA
GCGCGCCCATCGCCAGCCTCAGCCCCGTGTCCTCTTGGATCGGGTTCGAG
ATCGGCCTCATCGGCGACGCACTGGACTCCATCGAGGCGAGCGGAGAGGA
CGTGTCTTGCTACGACTCGAGCGCCTTCATCATCTTCATCAAGACCATCC
CCAGCCGGTTTTACCCGTTCTTCATCCTCGTCGTCCAGTTTTTGCTCATC
GGTGAGCAGAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8509:8862..9173+

>mRNA_S-dermatodea_contig8509.16681.1 ID=mRNA_S-dermatodea_contig8509.16681.1|Name=mRNA_S-dermatodea_contig8509.16681.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig8509:8862..9173+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATTACGCCAACACCCTGATCGTGGGGCAGACGATGCGCGCGTTCACCGA
CTCCCTCCTCATCTCCCGCGAGAAGCTGTCCTTCCTAGTGGACGCCACCA
GCGCGCCCATCGCCAGCCTCAGCCCCGTGTCCTCTTGGATCGGGTTCGAG
ATCGGCCTCATCGGCGACGCACTGGACTCCATCGAGGCGAGCGGAGAGGA
CGTGTCTTGCTACGACTCGAGCGCCTTCATCATCTTCATCAAGACCATCC
CCAGCCGGTTTTACCCGTTCTTCATCCTCGTCGTCCAGTTTTTGCTCATC
GGTGAGCAGAAAGATTACGCCAACACCCTGATCGTGGGGCAGACGATGCG
CGCGTTCACCGACTCCCTCCTCATCTCCCGCGAGAAGCTGTCCTTCCTAG
TGGACGCCACCAGCGCGCCCATCGCCAGCCTCAGCCCCGTGTCCTCTTGG
ATCGGGTTCGAGATCGGCCTCATCGGCGACGCACTGGACTCCATCGAGGC
GAGCGGAGAGGACGTGTCTTGCTACGACTCGAGCGCCTTCATCATCTTCA
TCAAGACCATCCCCAGCCGGTTTTACCCGTTCTTCATCCTCGTCGTCCAG
TTTTTGCTCATCGGTGAGCAGAAA
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