mRNA_S-dermatodea_contig85076.16680.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85076.16680.1
Unique NamemRNA_S-dermatodea_contig85076.16680.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig85076.16680.1 vs. uniprot
Match: D7G624_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G624_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.230e-30
Identity = 64/99 (64.65%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 KKRLADETTEGMDEEEYVSTFFEFRKAFFLAGR------GPQRKESAGSRPYLAEYLGLDGCAEATEKKLLEALAYMMYDYVGLVVETAIRARTGGRLI 279
            +KR ADE T GM+EE+YV TFFEFRKAFFL GR      G ++K   GSRP+LA YL L    EA +KKLLEALA+MMYDYVG V+E AIR RTGGRL+
Sbjct:  478 RKRFADERTVGMEEEDYVKTFFEFRKAFFLKGRCRTNPHGDKKKHPPGSRPFLASYLELQDSQEAKDKKLLEALAFMMYDYVGRVIEGAIRKRTGGRLV 576
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BLAST of mRNA_S-dermatodea_contig85076.16680.1 vs. uniprot
Match: A0A6H5L1L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1L2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.120e-29
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 KKRLADETTEGMDEEEYVSTFFEFRKAFFLAGR---GPQR---KESAGSRPYLAEYLGLDGCAEATEKKLLEALAYMMYDYVGLVVETAIRARTGGRLI 279
            +KR ADE T GM+EE+YV TFFEFRKAFFL GR    P R   K   GSRP+LA YL L    EA +KKLLEALA+MMYDYVG V+E AIR RTGGRL+
Sbjct:  490 RKRFADERTVGMEEEDYVKTFFEFRKAFFLKGRCRTNPHRDRKKNPPGSRPFLASYLELQDPQEAKDKKLLEALAFMMYDYVGRVIEGAIRKRTGGRLV 588
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85076.16680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G624_ECTSI1.230e-3064.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1L2_9PHAE2.120e-2965.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85076contigS-dermatodea_contig85076:219..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_004830.1
Exons1
Model size292
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925348.2500715-CDS-S-dermatodea_contig85076:218..5091622925348.2500715-CDS-S-dermatodea_contig85076:218..509Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85076 219..509 +
1694079872.630161-CDS-S-dermatodea_contig85076:218..5091694079872.630161-CDS-S-dermatodea_contig85076:218..509Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85076 219..509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85076.16680.1prot_S-dermatodea_contig85076.16680.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85076 219..509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85076.16680.1

>prot_S-dermatodea_contig85076.16680.1 ID=prot_S-dermatodea_contig85076.16680.1|Name=mRNA_S-dermatodea_contig85076.16680.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
KKRLADETTEGMDEEEYVSTFFEFRKAFFLAGRGPQRKESAGSRPYLAEY
LGLDGCAEATEKKLLEALAYMMYDYVGLVVETAIRARTGGRLIPICG
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mRNA from alignment at S-dermatodea_contig85076:219..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85076.16680.1 ID=mRNA_S-dermatodea_contig85076.16680.1|Name=mRNA_S-dermatodea_contig85076.16680.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=292bp|location=Sequence derived from alignment at S-dermatodea_contig85076:219..510+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAAAGAGGCTCGCAGATGAGACGACCGAGGGCATGGACGAGGAGGAGTA
CGTCAGCACCTTTTTCGAGTTCAGGAAGGCGTTTTTCTTGGCGGGGAGGG
GCCCGCAGCGCAAGGAAAGCGCCGGCTCCCGCCCTTACCTCGCCGAGTAC
CTCGGGCTCGACGGGTGTGCCGAGGCAACCGAGAAGAAGCTGCTCGAGGC
GCTGGCCTACATGATGTACGACTACGTGGGGTTGGTGGTGGAGACGGCGA
TCAGGGCGCGGACGGGGGGGCGGTTGATTCCTATCTGTGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig85076:219..510+

>mRNA_S-dermatodea_contig85076.16680.1 ID=mRNA_S-dermatodea_contig85076.16680.1|Name=mRNA_S-dermatodea_contig85076.16680.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig85076:219..510+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAAAGAGGCTCGCAGATGAGACGACCGAGGGCATGGACGAGGAGGAGTA
CGTCAGCACCTTTTTCGAGTTCAGGAAGGCGTTTTTCTTGGCGGGGAGGG
GCCCGCAGCGCAAGGAAAGCGCCGGCTCCCGCCCTTACCTCGCCGAGTAC
CTCGGGCTCGACGGGTGTGCCGAGGCAACCGAGAAGAAGCTGCTCGAGGC
GCTGGCCTACATGATGTACGACTACGTGGGGTTGGTGGTGGAGACGGCGA
TCAGGGCGCGGACGGGGGGGCGGTTGATTCCTATCTGTGGAAAAAAGAGG
CTCGCAGATGAGACGACCGAGGGCATGGACGAGGAGGAGTACGTCAGCAC
CTTTTTCGAGTTCAGGAAGGCGTTTTTCTTGGCGGGGAGGGGCCCGCAGC
GCAAGGAAAGCGCCGGCTCCCGCCCTTACCTCGCCGAGTACCTCGGGCTC
GACGGGTGTGCCGAGGCAACCGAGAAGAAGCTGCTCGAGGCGCTGGCCTA
CATGATGTACGACTACGTGGGGTTGGTGGTGGAGACGGCGATCAGGGCGC
GGACGGGGGGGCGGTTGATTCCTATCTGTGGA
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