mRNA_S-dermatodea_contig8506.16677.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8506.16677.1
Unique NamemRNA_S-dermatodea_contig8506.16677.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8506.16677.1 vs. uniprot
Match: D8LDX3_ECTSI (Exocyst subunit Exo70 family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX3_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 8.630e-82
Identity = 140/168 (83.33%), Postives = 151/168 (89.88%), Query Frame = 1 
Query:   37 MGAEKEILSAAALVAGVDTLQAGLASFESSTGQMKSIFEDFEGRLNKLEGEMLPMKDISAKLTLARRNITNAISKMESINDCFLLEKELRGVVQKGMRGNVGAVEYLEEMRRIDDAIAYFRKWPSLKSQKEAIQGLEDLSNTAAKESIDEFNRLMRTVGPAVQFQVHT 540
            MGAEKEI++AAAL  GV+ L AGL SFESST QMK I EDFEGRL KLE EMLPMK+ISAKL+ +RRNI +AI KMESIN+CFLLEKELRGVVQKGMRGNVGAVEYLEEMRRIDDAIAYFRKWPSLKSQKEAI+GLE+LS+ AAKE IDEFNRLMRTVGPAVQFQ  T
Sbjct:    1 MGAEKEIVNAAALAKGVEILGAGLTSFESSTRQMKGICEDFEGRLGKLEREMLPMKEISAKLSTSRRNIISAIEKMESINECFLLEKELRGVVQKGMRGNVGAVEYLEEMRRIDDAIAYFRKWPSLKSQKEAIKGLEELSSMAAKECIDEFNRLMRTVGPAVQFQTQT 168
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BLAST of mRNA_S-dermatodea_contig8506.16677.1 vs. uniprot
Match: A0A835YN31_9STRA (Exocyst subunit Exo70 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN31_9STRA)

HSP 1 Score: 130 bits (327), Expect = 7.830e-32
Identity = 66/133 (49.62%), Postives = 94/133 (70.68%), Query Frame = 1 
Query:  136 MKSIFEDFEGRLNKLEGEMLPMKDISAKLTLARRNITNAISKMESINDCFLLEKELRGVVQKGMRGNVGA--VEYLEEMRRIDDAIAYFRKWPSLKSQKEAIQGLEDLSNTAAKESIDEFNRLMRTVGPAVQF 528
            M+ I   F+GRL +LE EM PMK +S KL++ARR++T A+ +ME +N+ F LE E R  + +G+RG   A   EY +++RR+ +A+A+FR  PSL+SQ  A+ GL  L NTAA E ++E+ RLMR VGP+VQF
Sbjct:    1 MEGICNSFQGRLGQLEAEMRPMKMMSQKLSVARRHVTEAVEEMEKVNEYFTLEAEKRDAIARGVRGGGPARLAEYADDVRRVLEAMAFFRALPSLRSQGTALSGLTALCNTAAAECLEEYGRLMRAVGPSVQF 133
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BLAST of mRNA_S-dermatodea_contig8506.16677.1 vs. uniprot
Match: A0A6G0XP35_9STRA (Exocyst subunit Exo70 family protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP35_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.300e-5
Identity = 30/137 (21.90%), Postives = 74/137 (54.01%), Query Frame = 1 
Query:   85 VDTLQAGLASFESSTGQMKSIFEDFEGRLNKLEGEMLPMKDISAKLTLARRNITNAISKMESINDCFLLEKELRGVVQKGMRGNVGAVEYLEEMRRIDDAIAYFRKWPSLKSQKEAI-QGLEDLSNTAAKESIDEFN 492
            +D ++  L   ++    + ++   F+  L++LEG+M+P+ +++ KL   ++NI  ++ ++ ++N+ F    E+   +QKG + +    EY++ ++++  +IA+  +    +   +A+ Q  + L+ T  K   D  N
Sbjct:    9 IDAIRRALGESKTQLATINTVLAGFKTGLDRLEGQMMPIYNLTGKLRETQKNIDLSVHELRAVNETFTTATEVASTLQKGAKYD--QEEYIKSIQKLLRSIAFLEEHRVYEGSGKALEQAKQLLAQTQVKCKTDIVN 143
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BLAST of mRNA_S-dermatodea_contig8506.16677.1 vs. uniprot
Match: A0A1V9YNI8_9STRA (Exocyst subunit Exo70 family protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YNI8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.200e-5
Identity = 31/113 (27.43%), Postives = 60/113 (53.10%), Query Frame = 1 
Query:   79 AGVDTLQAGLASFESSTGQMKSIFEDFEGRLNKLEGEMLPMKDISAKLTLARRNITNAISKMESINDCFLLEKELRGVVQKG-----------MRGNVGAVEYLEEMRRIDDA 384
            A V T++  +A  ++    +  I   F   L+KLEGEM+P+ +++ KL   ++NI  ++ ++ ++ND F    ++  V+Q+G           M   + A+E+LE+ R  + A
Sbjct:    9 AAVATIRMAMADSKAQLEAVNGILVGFTAGLDKLEGEMMPIYNLTEKLRETQKNIDISVHELRAVNDNFTTATDVAAVLQQGAKYDQERYIKTMHKLLRAIEFLEQHRGYEGA 121
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8506.16677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LDX3_ECTSI8.630e-8283.33Exocyst subunit Exo70 family protein n=2 Tax=Ectoc... [more]
A0A835YN31_9STRA7.830e-3249.62Exocyst subunit Exo70 family protein n=1 Tax=Tribo... [more]
A0A6G0XP35_9STRA2.300e-521.90Exocyst subunit Exo70 family protein n=1 Tax=Aphan... [more]
A0A1V9YNI8_9STRA4.200e-527.43Exocyst subunit Exo70 family protein n=1 Tax=Achly... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8506contigS-dermatodea_contig8506:402..2440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.5
Seed ortholog evalue9.5e-07
Seed eggNOG ortholog10224.XP_006812104.1
Preferred nameEXOC7
KEGG koko:K07195
KEGG Pathwayko04910,map04910
GOsGO:0000145,GO:0001505,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006810,GO:0006836,GO:0006887,GO:0006903,GO:0006904,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0008013,GO:0008150,GO:0008289,GO:0009894,GO:0009987,GO:0010506,GO:0015630,GO:0016020,GO:0016043,GO:0016079,GO:0016080,GO:0016081,GO:0016192,GO:0016241,GO:0017156,GO:0019222,GO:0022406,GO:0023052,GO:0023061,GO:0030424,GO:0030426,GO:0030427,GO:0031323,GO:0031329,GO:0032584,GO:0032940,GO:0032991,GO:0033267,GO:0034451,GO:0035091,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043900,GO:0043903,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0046903,GO:0046907,GO:0048278,GO:0048489,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090522,GO:0090723,GO:0097458,GO:0097479,GO:0097480,GO:0098916,GO:0099003,GO:0099022,GO:0099023,GO:0099504,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0150034,GO:1901981,GO:1902936,GO:2000535
EggNOG free text desc.exocytosis
EggNOG OGs38F68@33154,3BG2U@33208,3CRK9@33213,KOG2344@1,KOG2344@2759
COG Functional cat.U
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size542
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8506.16677.1prot_S-dermatodea_contig8506.16677.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8506 402..2440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925348.1245778-CDS-S-dermatodea_contig8506:401..5781622925348.1245778-CDS-S-dermatodea_contig8506:401..578Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8506 402..578 -
1694079872.5683959-CDS-S-dermatodea_contig8506:401..5781694079872.5683959-CDS-S-dermatodea_contig8506:401..578Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8506 402..578 -
1622925348.1360974-CDS-S-dermatodea_contig8506:1456..15581622925348.1360974-CDS-S-dermatodea_contig8506:1456..1558Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8506 1457..1558 -
1694079872.5842752-CDS-S-dermatodea_contig8506:1456..15581694079872.5842752-CDS-S-dermatodea_contig8506:1456..1558Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8506 1457..1558 -
1622925348.1491888-CDS-S-dermatodea_contig8506:2179..24401622925348.1491888-CDS-S-dermatodea_contig8506:2179..2440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8506 2180..2440 -
1694079872.5959902-CDS-S-dermatodea_contig8506:2179..24401694079872.5959902-CDS-S-dermatodea_contig8506:2179..2440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8506 2180..2440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8506.16677.1

>prot_S-dermatodea_contig8506.16677.1 ID=prot_S-dermatodea_contig8506.16677.1|Name=mRNA_S-dermatodea_contig8506.16677.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=180bp
PLQTHESSTPAIMGAEKEILSAAALVAGVDTLQAGLASFESSTGQMKSIF
EDFEGRLNKLEGEMLPMKDISAKLTLARRNITNAISKMESINDCFLLEKE
LRGVVQKGMRGNVGAVEYLEEMRRIDDAIAYFRKWPSLKSQKEAIQGLED
LSNTAAKESIDEFNRLMRTVGPAVQFQVHT
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mRNA from alignment at S-dermatodea_contig8506:402..2440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8506.16677.1 ID=mRNA_S-dermatodea_contig8506.16677.1|Name=mRNA_S-dermatodea_contig8506.16677.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2039bp|location=Sequence derived from alignment at S-dermatodea_contig8506:402..2440- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCATTGCAAACGCACGAGAGCTCCACCCCGGCCATCATGGGGGCTGAGAA
GGAGATACTGAGCGCCGCTGCGTTAGTAGCGGGGGTGGACACCCTGCAAG
CCGGCCTTGCGAGCTTTGAGTCGTCGACGGGTCAAATGAAGTCCATATTC
GAGGACTTCGAAGGACGACTAAACAAGCTGGAGGGCGAGATGCTCCCCAT
GAAAGACATAAGCGCGAAGCTGACCCTGGCGCGACGTAACATCACCAACG
CCATATCGAAGGTGTGATGTGCTTTGTGGGATTCTTGGGCGTGGGTGTGG
TGATTGCGTACGGCTGTGGTGCTACGGTGGGTCGAAAGCCGACGGGTTGA
TAGAAGAGAGGCCGAGTGGACGGTGGAAGAGCTGTCAAGATTTGTTCCAT
GATGTGTTGTATGTACAACATAAGTTTGTATTGTATCATATCATACGAAC
AACCCACAGCAGCCTTGAGGCAATTACTCGTACAAGTACGTGAAGACAGC
AGTAGCGTAGCTGTGTGTGTGAAAGCCGGCGCAAGGTTTTTCGACGAGGG
CGCCGCTCCCATGTACGACCAGGAACGAGGTTGCGCTGTGATTCGGTCGC
CTCTGTTGATGAAGGCTGACAAACGCACGTACAATACTGCTGTACCAGGT
ATTCAACAGCAGTAGTTCAAGTTACGCCGCACCTTTCTGTCTTCAGCAAA
GCTGCATCACGTATCATATCATACTGCTGCTGTAAGAATGAACCTCTGTA
CCGGTACATTGTAAAAGCCTATTATAGACGATGATGTGACCGCAAACATT
TTCGTGTGTACGGTACAGTAGTGTAGCAGGGTCTGATGAAAACAGCTGTC
CGTTTTGCGTGTCCTTCTGCTCTCTGCGCTAGATGGAGAGCATCAACGAT
TGCTTCCTGCTGGAGAAGGAGTTGCGGGGGGTGGTGCAAAAGGGCATGCG
TGGGAACGTCGGGGCTGTGGAGTATCTTGAAGAGGTGGGTTTGTAATCAC
CGTTGAGCGCGCGTCCACATGAGCCCATCACCACGACTACATCATACCTC
AGCTGCATAGTATTTAGTACCTGTTGGGCCAATACGTTCTGCTGCACTCA
GCGCGCGGGCTGGAGACGCCCGGGTCCTTCGGAGCCCATCAACAACAGTA
TCCCCGCCCCATGCCCCTTGCCCTCCTCCGCTGCTTCAAGCATCCATAAT
GGTGAAGGAAGACCGTGGCTGTGTATTTGCACTACCCTTAGGTGTTGTGC
TGCGTTGCGGGTTAAATTCGCGCAGTCGTTAGTCGTGGCAAAGCAAAACA
TGTCGTTACATAAAAACACTCGGCTGGGACGAGAACAATGGCGATTGAGG
GCTTGCGGATGAGATTCCATGAGGTGGTCCCTGCCACAAATGTGGCGTTA
AACGGGCCACGAGCAGTTTCAAAGAAGATTCGCAAAATTGCTGTGAAAAC
GAATGACGTCAAAACGGAATCGTGGGGAAGCAAGGTATCTTCATCCCCTA
AGCGATCAACGAAGAGTAAGCGAGGGCCTATATAGTTCCCTCCCTAAGCG
GTTTGATATTGGGCGCTGTCCGTCTTGATCGTTGGGCCTCCGATTTTTTT
CAGGAAGAAGCCCCAGGGTTTGCTCGTCTTGACCCCACTTCGAAGTATTT
TCGGAACTATGGGAGTGTGATGCCGGCATGGTCATTCTTCGAACTCGCTT
TTCGACGAAGTTTAACTCGTCGTGTTCACCGCGGAAGAACGCGAAGCTGG
CCCTTCCTGCCATTCAACGAGCTGGACACCTCGCTAGCACGAGCTTTGAC
CCACCACCCCTGCCGTCTCCAATCTCACTCGCGTCGTGCCCCGCCTCTCC
CCCCCCCCGCAGATGCGACGTATCGACGACGCTATCGCGTACTTCCGCAA
GTGGCCCAGCCTCAAGTCTCAGAAGGAAGCCATCCAAGGCTTGGAGGATC
TCTCCAACACAGCTGCTAAGGAGAGCATCGATGAATTCAACCGTCTCATG
CGAACCGTTGGACCCGCGGTTCAATTCCAGGTACACACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8506:402..2440-

>mRNA_S-dermatodea_contig8506.16677.1 ID=mRNA_S-dermatodea_contig8506.16677.1|Name=mRNA_S-dermatodea_contig8506.16677.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at S-dermatodea_contig8506:402..2440- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCATTGCAAACGCACGAGAGCTCCACCCCGGCCATCATGGGGGCTGAGAA
GGAGATACTGAGCGCCGCTGCGTTAGTAGCGGGGGTGGACACCCTGCAAG
CCGGCCTTGCGAGCTTTGAGTCGTCGACGGGTCAAATGAAGTCCATATTC
GAGGACTTCGAAGGACGACTAAACAAGCTGGAGGGCGAGATGCTCCCCAT
GAAAGACATAAGCGCGAAGCTGACCCTGGCGCGACGTAACATCACCAACG
CCATATCGAAGCCATTGCAAACGCACGAGAGCTCCACCCCGGCCATCATG
GGGGCTGAGAAGGAGATACTGAGCGCCGCTGCGTTAGTAGCGGGGGTGGA
CACCCTGCAAGCCGGCCTTGCGAGCTTTGAGTCGTCGACGGGTCAAATGA
AGTCCATATTCGAGGACTTCGAAGGACGACTAAACAAGCTGGAGGGCGAG
ATGCTCCCCATGAAAGACATAAGCGCGAAGCTGACCCTGGCGCGACGTAA
CATCACCAACGCCATATCGAAGATGGAGAGCATCAACGATTGCTTCCTGC
TGGAGAAGGAGTTGCGGGGGGTGGTGCAAAAGGGCATGCGTGGGAACGTC
GGGGCTGTGGAGTATCTTGAAGAGATGGAGAGCATCAACGATTGCTTCCT
GCTGGAGAAGGAGTTGCGGGGGGTGGTGCAAAAGGGCATGCGTGGGAACG
TCGGGGCTGTGGAGTATCTTGAAGAGATGCGACGTATCGACGACGCTATC
GCGTACTTCCGCAAGTGGCCCAGCCTCAAGTCTCAGAAGGAAGCCATCCA
AGGCTTGGAGGATCTCTCCAACACAGCTGCTAAGGAGAGCATCGATGAAT
TCAACCGTCTCATGCGAACCGTTGGACCCGCGGTTCAATTCCAGGTACAC
ACGATGCGACGTATCGACGACGCTATCGCGTACTTCCGCAAGTGGCCCAG
CCTCAAGTCTCAGAAGGAAGCCATCCAAGGCTTGGAGGATCTCTCCAACA
CAGCTGCTAAGGAGAGCATCGATGAATTCAACCGTCTCATGCGAACCGTT
GGACCCGCGGTTCAATTCCAGGTACACACG
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