mRNA_S-dermatodea_contig8504.16676.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-dermatodea_contig8504.16676.1
Unique Name	mRNA_S-dermatodea_contig8504.16676.1
Type	mRNA
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig8504.16676.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig8504.16676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig8504	contig	S-dermatodea_contig8504:6691..8247 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	1557
Cds size	1557
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622925348.08701-CDS-S-dermatodea_contig8504:6690..8247	1622925348.08701-CDS-S-dermatodea_contig8504:6690..8247	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig8504 6691..8247 +
1694079872.5564384-CDS-S-dermatodea_contig8504:6690..8247	1694079872.5564384-CDS-S-dermatodea_contig8504:6690..8247	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig8504 6691..8247 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig8504.16676.1	prot_S-dermatodea_contig8504.16676.1	Saccorhiza dermatodea SderLu1190fm monoicous	polypeptide	S-dermatodea_contig8504 6691..8247 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-dermatodea_contig8504:6691..8247+
coding sequence from alignment at S-dermatodea_contig8504:6691..8247+

protein sequence of mRNA_S-dermatodea_contig8504.16676.1

>prot_S-dermatodea_contig8504.16676.1 ID=prot_S-dermatodea_contig8504.16676.1|Name=mRNA_S-dermatodea_contig8504.16676.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=519bp
DEVIGQRYGFFSPVTTTGRSFSSETAATADTVAAADDPDHGDDIGREGDE
EKYPDARIPRESGDMQTSKSAPEFSAAVGPGTSGAERGEGSRSEPRSIPN
PESSAESGAESVANEQQATDSLLPSEGFTSLGEGLASPGAAGDPASVSAQ
RAASKNVRDGAPEEQALLARGRDDPGRDVPPGESELGEVGGFSAEVVSAA
AGDVTAGGVLQGPTDGKIIGGDRAGFATVGRADAGDVFARDPTGVITAKS
SGGLASQSSGTTAPWDDDDGPLRVDFSSPGRSELESWRRLEYFPLSERQE
QRVGADDAGARGKDGPDAGLGVGDALAAADAESGTAESLRVMFAGDRSAL
GLPGRTSPSDADDTDKHDEVLLVGGLSMLLPTPPSASAGVSPDCSEERSA
DRSVGGSSVAAAADDPIVKSAPLGPTLGVEALPPAAGKLLAKDGRYSTEE
TTDRHVANRGYGSWNNEKCAAVGIDGNNDAPCSTLADGRGEREGGGGDSP
VSDTGAGAGDGRAGTDGNG

mRNA from alignment at S-dermatodea_contig8504:6691..8247+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-dermatodea_contig8504.16676.1 ID=mRNA_S-dermatodea_contig8504.16676.1|Name=mRNA_S-dermatodea_contig8504.16676.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1557bp|location=Sequence derived from alignment at S-dermatodea_contig8504:6691..8247+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGAGGTGATTGGCCAAAGGTACGGTTTCTTTTCGCCGGTTACGACCAC
CGGGCGTTCCTTTTCGAGTGAAACCGCCGCCACCGCAGACACCGTCGCAG
CCGCCGACGACCCCGACCACGGTGACGATATCGGTCGCGAAGGAGATGAG
GAAAAATACCCCGACGCTCGCATTCCTAGAGAGTCCGGCGATATGCAGAC
CTCTAAATCTGCCCCGGAATTCAGCGCGGCGGTCGGCCCGGGAACGTCCG
GCGCCGAACGGGGCGAGGGATCTCGTTCGGAACCTCGCAGCATTCCGAAT
CCGGAATCCAGCGCGGAATCCGGAGCGGAATCGGTCGCGAACGAGCAACA
AGCTACCGATTCCCTTCTCCCGAGCGAGGGGTTTACTTCCCTTGGCGAGG
GTCTTGCTTCCCCTGGCGCGGCGGGAGACCCTGCTTCGGTAAGCGCCCAA
CGTGCTGCCTCAAAAAATGTGCGCGACGGTGCCCCTGAGGAGCAAGCACT
TTTGGCCCGTGGTAGGGACGATCCCGGGCGCGATGTGCCTCCCGGAGAAT
CGGAACTCGGAGAGGTGGGCGGGTTTTCAGCGGAGGTGGTGTCCGCAGCG
GCAGGGGATGTCACGGCGGGCGGAGTCCTGCAGGGTCCCACCGATGGGAA
GATAATCGGAGGCGATCGCGCCGGATTCGCGACGGTGGGCAGGGCTGACG
CCGGCGACGTTTTTGCCAGAGATCCGACCGGGGTTATCACCGCGAAATCT
TCCGGGGGTCTGGCATCTCAGTCATCAGGAACGACTGCTCCCTGGGATGA
CGACGACGGTCCTCTGCGGGTCGATTTTTCGTCTCCCGGCCGATCGGAGC
TTGAGTCTTGGCGGAGGCTGGAATATTTCCCGCTGTCCGAGAGGCAAGAA
CAGCGGGTCGGTGCCGACGATGCGGGCGCGAGGGGTAAGGATGGGCCAGA
TGCAGGGCTCGGGGTCGGGGATGCTCTGGCGGCGGCCGATGCGGAGTCTG
GCACAGCGGAATCGCTGCGGGTGATGTTTGCGGGAGATCGGTCGGCGCTT
GGTTTGCCCGGGCGCACGAGCCCCTCGGACGCCGATGATACTGACAAACA
CGATGAGGTACTGCTGGTGGGTGGCCTGTCGATGCTACTACCGACCCCGC
CATCGGCGAGTGCGGGAGTCTCCCCGGATTGTTCCGAAGAACGGTCTGCG
GATCGTTCTGTGGGTGGTTCCTCCGTTGCGGCGGCGGCGGATGACCCCAT
CGTGAAGAGCGCCCCGTTAGGGCCAACCTTGGGCGTTGAAGCCTTGCCGC
CGGCGGCGGGAAAGCTCCTCGCGAAGGATGGGCGTTACTCGACGGAGGAA
ACAACCGACCGGCATGTGGCGAACCGCGGGTACGGCAGCTGGAACAACGA
GAAGTGTGCCGCAGTCGGCATCGATGGCAACAACGATGCGCCGTGTTCGA
CCTTGGCAGATGGCAGAGGAGAAAGAGAAGGAGGGGGAGGAGATAGCCCC
GTCTCAGACACCGGCGCCGGCGCCGGCGACGGCCGAGCGGGTACCGACGG
TAACGGC

Coding sequence (CDS) from alignment at S-dermatodea_contig8504:6691..8247+

>mRNA_S-dermatodea_contig8504.16676.1 ID=mRNA_S-dermatodea_contig8504.16676.1|Name=mRNA_S-dermatodea_contig8504.16676.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3114bp|location=Sequence derived from alignment at S-dermatodea_contig8504:6691..8247+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGAGGTGATTGGCCAAAGGTACGGTTTCTTTTCGCCGGTTACGACCAC
CGGGCGTTCCTTTTCGAGTGAAACCGCCGCCACCGCAGACACCGTCGCAG
CCGCCGACGACCCCGACCACGGTGACGATATCGGTCGCGAAGGAGATGAG
GAAAAATACCCCGACGCTCGCATTCCTAGAGAGTCCGGCGATATGCAGAC
CTCTAAATCTGCCCCGGAATTCAGCGCGGCGGTCGGCCCGGGAACGTCCG
GCGCCGAACGGGGCGAGGGATCTCGTTCGGAACCTCGCAGCATTCCGAAT
CCGGAATCCAGCGCGGAATCCGGAGCGGAATCGGTCGCGAACGAGCAACA
AGCTACCGATTCCCTTCTCCCGAGCGAGGGGTTTACTTCCCTTGGCGAGG
GTCTTGCTTCCCCTGGCGCGGCGGGAGACCCTGCTTCGGTAAGCGCCCAA
CGTGCTGCCTCAAAAAATGTGCGCGACGGTGCCCCTGAGGAGCAAGCACT
TTTGGCCCGTGGTAGGGACGATCCCGGGCGCGATGTGCCTCCCGGAGAAT
CGGAACTCGGAGAGGTGGGCGGGTTTTCAGCGGAGGTGGTGTCCGCAGCG
GCAGGGGATGTCACGGCGGGCGGAGTCCTGCAGGGTCCCACCGATGGGAA
GATAATCGGAGGCGATCGCGCCGGATTCGCGACGGTGGGCAGGGCTGACG
CCGGCGACGTTTTTGCCAGAGATCCGACCGGGGTTATCACCGCGAAATCT
TCCGGGGGTCTGGCATCTCAGTCATCAGGAACGACTGCTCCCTGGGATGA
CGACGACGGTCCTCTGCGGGTCGATTTTTCGTCTCCCGGCCGATCGGAGC
TTGAGTCTTGGCGGAGGCTGGAATATTTCCCGCTGTCCGAGAGGCAAGAA
CAGCGGGTCGGTGCCGACGATGCGGGCGCGAGGGGTAAGGATGGGCCAGA
TGCAGGGCTCGGGGTCGGGGATGCTCTGGCGGCGGCCGATGCGGAGTCTG
GCACAGCGGAATCGCTGCGGGTGATGTTTGCGGGAGATCGGTCGGCGCTT
GGTTTGCCCGGGCGCACGAGCCCCTCGGACGCCGATGATACTGACAAACA
CGATGAGGTACTGCTGGTGGGTGGCCTGTCGATGCTACTACCGACCCCGC
CATCGGCGAGTGCGGGAGTCTCCCCGGATTGTTCCGAAGAACGGTCTGCG
GATCGTTCTGTGGGTGGTTCCTCCGTTGCGGCGGCGGCGGATGACCCCAT
CGTGAAGAGCGCCCCGTTAGGGCCAACCTTGGGCGTTGAAGCCTTGCCGC
CGGCGGCGGGAAAGCTCCTCGCGAAGGATGGGCGTTACTCGACGGAGGAA
ACAACCGACCGGCATGTGGCGAACCGCGGGTACGGCAGCTGGAACAACGA
GAAGTGTGCCGCAGTCGGCATCGATGGCAACAACGATGCGCCGTGTTCGA
CCTTGGCAGATGGCAGAGGAGAAAGAGAAGGAGGGGGAGGAGATAGCCCC
GTCTCAGACACCGGCGCCGGCGCCGGCGACGGCCGAGCGGGTACCGACGG
TAACGGCGACGAGGTGATTGGCCAAAGGTACGGTTTCTTTTCGCCGGTTA
CGACCACCGGGCGTTCCTTTTCGAGTGAAACCGCCGCCACCGCAGACACC
GTCGCAGCCGCCGACGACCCCGACCACGGTGACGATATCGGTCGCGAAGG
AGATGAGGAAAAATACCCCGACGCTCGCATTCCTAGAGAGTCCGGCGATA
TGCAGACCTCTAAATCTGCCCCGGAATTCAGCGCGGCGGTCGGCCCGGGA
ACGTCCGGCGCCGAACGGGGCGAGGGATCTCGTTCGGAACCTCGCAGCAT
TCCGAATCCGGAATCCAGCGCGGAATCCGGAGCGGAATCGGTCGCGAACG
AGCAACAAGCTACCGATTCCCTTCTCCCGAGCGAGGGGTTTACTTCCCTT
GGCGAGGGTCTTGCTTCCCCTGGCGCGGCGGGAGACCCTGCTTCGGTAAG
CGCCCAACGTGCTGCCTCAAAAAATGTGCGCGACGGTGCCCCTGAGGAGC
AAGCACTTTTGGCCCGTGGTAGGGACGATCCCGGGCGCGATGTGCCTCCC
GGAGAATCGGAACTCGGAGAGGTGGGCGGGTTTTCAGCGGAGGTGGTGTC
CGCAGCGGCAGGGGATGTCACGGCGGGCGGAGTCCTGCAGGGTCCCACCG
ATGGGAAGATAATCGGAGGCGATCGCGCCGGATTCGCGACGGTGGGCAGG
GCTGACGCCGGCGACGTTTTTGCCAGAGATCCGACCGGGGTTATCACCGC
GAAATCTTCCGGGGGTCTGGCATCTCAGTCATCAGGAACGACTGCTCCCT
GGGATGACGACGACGGTCCTCTGCGGGTCGATTTTTCGTCTCCCGGCCGA
TCGGAGCTTGAGTCTTGGCGGAGGCTGGAATATTTCCCGCTGTCCGAGAG
GCAAGAACAGCGGGTCGGTGCCGACGATGCGGGCGCGAGGGGTAAGGATG
GGCCAGATGCAGGGCTCGGGGTCGGGGATGCTCTGGCGGCGGCCGATGCG
GAGTCTGGCACAGCGGAATCGCTGCGGGTGATGTTTGCGGGAGATCGGTC
GGCGCTTGGTTTGCCCGGGCGCACGAGCCCCTCGGACGCCGATGATACTG
ACAAACACGATGAGGTACTGCTGGTGGGTGGCCTGTCGATGCTACTACCG
ACCCCGCCATCGGCGAGTGCGGGAGTCTCCCCGGATTGTTCCGAAGAACG
GTCTGCGGATCGTTCTGTGGGTGGTTCCTCCGTTGCGGCGGCGGCGGATG
ACCCCATCGTGAAGAGCGCCCCGTTAGGGCCAACCTTGGGCGTTGAAGCC
TTGCCGCCGGCGGCGGGAAAGCTCCTCGCGAAGGATGGGCGTTACTCGAC
GGAGGAAACAACCGACCGGCATGTGGCGAACCGCGGGTACGGCAGCTGGA
ACAACGAGAAGTGTGCCGCAGTCGGCATCGATGGCAACAACGATGCGCCG
TGTTCGACCTTGGCAGATGGCAGAGGAGAAAGAGAAGGAGGGGGAGGAGA
TAGCCCCGTCTCAGACACCGGCGCCGGCGCCGGCGACGGCCGAGCGGGTA
CCGACGGTAACGGC