mRNA_S-dermatodea_contig8504.16673.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8504.16673.1
Unique NamemRNA_S-dermatodea_contig8504.16673.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8504.16673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8504contigS-dermatodea_contig8504:393..858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925348.0201795-CDS-S-dermatodea_contig8504:392..8571622925348.0201795-CDS-S-dermatodea_contig8504:392..857Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8504 393..857 +
1694079872.5237353-CDS-S-dermatodea_contig8504:392..8571694079872.5237353-CDS-S-dermatodea_contig8504:392..857Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8504 393..857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8504.16673.1prot_S-dermatodea_contig8504.16673.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8504 393..857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8504.16673.1

>prot_S-dermatodea_contig8504.16673.1 ID=prot_S-dermatodea_contig8504.16673.1|Name=mRNA_S-dermatodea_contig8504.16673.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=155bp
GPAFNPFSPLHRAAYHLLGVKRPPSGPEQPQALQQATPPPPHSRRGIPSP
QANRSRIESPTRRASRGPPAGSSDRVSVTVVSGGVRRGRSDGGAVGFGLS
DGVYATAVSGGVRRGGSSGGGVGDGDGRVDDDREAVDSERRQNAAINAAR
LSSVR
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mRNA from alignment at S-dermatodea_contig8504:393..858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8504.16673.1 ID=mRNA_S-dermatodea_contig8504.16673.1|Name=mRNA_S-dermatodea_contig8504.16673.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=466bp|location=Sequence derived from alignment at S-dermatodea_contig8504:393..858+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCCGGCGTTCAACCCCTTCTCGCCCCTCCACCGGGCCGCTTACCACCT
CCTCGGTGTAAAGAGACCACCGAGCGGCCCGGAGCAACCACAGGCATTGC
AGCAGGCGACTCCGCCACCGCCGCACTCGCGCAGGGGGATTCCCTCCCCC
CAGGCCAACCGTAGCCGAATCGAGAGCCCTACTCGGAGGGCTAGCCGTGG
GCCGCCGGCTGGGTCTTCGGATCGCGTGTCGGTGACAGTGGTTTCAGGAG
GTGTCCGCCGCGGGAGATCCGATGGTGGAGCAGTTGGATTTGGCTTGTCG
GATGGCGTTTATGCGACGGCGGTTTCGGGAGGTGTCCGCCGTGGGGGTTC
AAGTGGCGGAGGCGTTGGCGACGGCGATGGGCGTGTTGATGACGACAGAG
AGGCTGTAGACAGCGAGCGCCGGCAAAATGCGGCAATAAACGCGGCGAGA
CTCTCGTCGGTTCGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8504:393..858+

>mRNA_S-dermatodea_contig8504.16673.1 ID=mRNA_S-dermatodea_contig8504.16673.1|Name=mRNA_S-dermatodea_contig8504.16673.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at S-dermatodea_contig8504:393..858+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCCGGCGTTCAACCCCTTCTCGCCCCTCCACCGGGCCGCTTACCACCT
CCTCGGTGTAAAGAGACCACCGAGCGGCCCGGAGCAACCACAGGCATTGC
AGCAGGCGACTCCGCCACCGCCGCACTCGCGCAGGGGGATTCCCTCCCCC
CAGGCCAACCGTAGCCGAATCGAGAGCCCTACTCGGAGGGCTAGCCGTGG
GCCGCCGGCTGGGTCTTCGGATCGCGTGTCGGTGACAGTGGTTTCAGGAG
GTGTCCGCCGCGGGAGATCCGATGGTGGAGCAGTTGGATTTGGCTTGTCG
GATGGCGTTTATGCGACGGCGGTTTCGGGAGGTGTCCGCCGTGGGGGTTC
AAGTGGCGGAGGCGTTGGCGACGGCGATGGGCGTGTTGATGACGACAGAG
AGGCTGTAGACAGCGAGCGCCGGCAAAATGCGGCAATAAACGCGGCGAGA
CTCTCGTCGGTTCGGGGCCCGGCGTTCAACCCCTTCTCGCCCCTCCACCG
GGCCGCTTACCACCTCCTCGGTGTAAAGAGACCACCGAGCGGCCCGGAGC
AACCACAGGCATTGCAGCAGGCGACTCCGCCACCGCCGCACTCGCGCAGG
GGGATTCCCTCCCCCCAGGCCAACCGTAGCCGAATCGAGAGCCCTACTCG
GAGGGCTAGCCGTGGGCCGCCGGCTGGGTCTTCGGATCGCGTGTCGGTGA
CAGTGGTTTCAGGAGGTGTCCGCCGCGGGAGATCCGATGGTGGAGCAGTT
GGATTTGGCTTGTCGGATGGCGTTTATGCGACGGCGGTTTCGGGAGGTGT
CCGCCGTGGGGGTTCAAGTGGCGGAGGCGTTGGCGACGGCGATGGGCGTG
TTGATGACGACAGAGAGGCTGTAGACAGCGAGCGCCGGCAAAATGCGGCA
ATAAACGCGGCGAGACTCTCGTCGGTTCGG
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