mRNA_S-dermatodea_contig8504.16675.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8504.16675.1
Unique NamemRNA_S-dermatodea_contig8504.16675.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8504.16675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8504contigS-dermatodea_contig8504:3476..6348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2039
Cds size2037
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.9779575-CDS-S-dermatodea_contig8504:3475..35921622925347.9779575-CDS-S-dermatodea_contig8504:3475..3592Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8504 3476..3592 +
1694079872.495831-CDS-S-dermatodea_contig8504:3475..35921694079872.495831-CDS-S-dermatodea_contig8504:3475..3592Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8504 3476..3592 +
1622925347.9939587-CDS-S-dermatodea_contig8504:4428..63481622925347.9939587-CDS-S-dermatodea_contig8504:4428..6348Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8504 4429..6348 +
1694079872.5059452-CDS-S-dermatodea_contig8504:4428..63481694079872.5059452-CDS-S-dermatodea_contig8504:4428..6348Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8504 4429..6348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8504.16675.1prot_S-dermatodea_contig8504.16675.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8504 3476..6348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8504.16675.1

>prot_S-dermatodea_contig8504.16675.1 ID=prot_S-dermatodea_contig8504.16675.1|Name=mRNA_S-dermatodea_contig8504.16675.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=679bp
GKVVGESPSASSVLLSSAVKDFSAAVGEFSEASQAWMGQVTVGGDLNDDV
VAFREEAEIPTTASRPPSDAIPDIVTLPQQQYRGHKEHPSPPRTTEIGTA
NPGLPLDATPALSLNGILEDYDRSDVAVALERKIPEISADFSEDIPEVAP
RGKSGTPRWRDRARAWFGGGGPGGDAGRVTGEDRSDVANAGALVGVDTDA
IDGNFVGADVARDGRDTAMVGNVVVSSEDTAGGVDGFGVNGDGGDERSIA
GWTEGGAAGTDAMHTVTDASEVSAVDGPEIVAGAAKNADVPDTAAIAAGV
IDGGFASADAMVKDASDVSTVDGFGYVAGATKPADVQDTPAIDAGVSGAT
ASDGGTTFATGDAESSDDISSVPNEAEVDRDNAAGTADPRKGTRDTASVE
GGAAITADYGTGVKNAAEVEFAAGVLVVAGGDETVASEYAAATTADTADA
TSACGNTVSDDAPCTPSAASAVASMGGGDDALADADTEDAEDTAAVEQGS
GGGTASSAAFDVGATANAVADHRETGIPDSVGEVVAATDDDGTGRSNREG
TIKSASDGIDVTPATFASLLGAGGPTAGNGVKTDFGGSTNVGTTVDSDNS
PHPPEKETALSDAPGPDDTGRNDNTGASGSGYRAPRPEITPESSPTPPPD
PRSRPAPSVGPDSAPTPPSGLAPTASTTP
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mRNA from alignment at S-dermatodea_contig8504:3476..6348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8504.16675.1 ID=mRNA_S-dermatodea_contig8504.16675.1|Name=mRNA_S-dermatodea_contig8504.16675.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2873bp|location=Sequence derived from alignment at S-dermatodea_contig8504:3476..6348+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAAAGGTAGTAGGCGAGTCGCCGTCGGCTTCGTCTGTGCTGCTGTCGTC
GGCCGTGAAGGATTTCTCGGCCGCGGTCGGAGAGTTTTCGGAAGCTTCTC
AGGCGTGGATGGGGCAGGTGAAAGCTGTACGGGTGTTTCTTGGTGTCCTG
CTTCGCGGGCTCTGCCGTTGCGCTGTTGTGTATGTTTGTGATCGGTAGCG
TACTCGCACTAGTGCGTTTTGTCTCCGGTATCGAGGGTACCCGACGCGAC
GCTCTCCCTTCTTTACCGCACGGAAAAACCTCCTGCTTGTATGTGCATGG
CGTCTTGTGTTCCGGGTTTTGTTTTGTTTTGCGTTTTCCCCAACGCCATG
CGGGTTTCTGTCCTCAAAAGGCATTCCGAAGTCAGCGGTTGACATTGTCT
CCACTTGGTTATTTTCTTTGCAGGACTCACGATTTGGGCAACTCGCTCGT
CACAGTTTCTGGATTCGCTCAGTTAAAATCTTTCGGGTGACCCTTTGAAC
ACCTTGGGCGCACTGCCGTAAACCACTCCCGGTGGTATGGTGACCGTCGC
TTTAGAAGGTGCTGCATGCCCTTGCAATCGGAGAGGAGGCTAACCCAAGT
TCCGAGGTATGCCCTCTCTGATTCCAACCTTTGTTGTGAATCTTCCTCAC
GCACTACAGCCGTTTTGTAGATGAGCCAGCATTATTTTTTTCGATTTATC
GATTTCTCATTTGACCACGAGCGGGAGCGGAAACGATTGGCGAGCCGGTC
GGTCGCACGTGCCGGTCCGCTGCAAGTGTGACGATCAATTAACCAATGAA
GCCAATGCGATGAAATCAAAGCAACGAAACATGAGGTATAATATCTACTC
CGGCGGATCTACATGCAATTTTGGCATTTTGGTATGTGTGCTGTATTCAA
TCACCCTCATCATCCCTCCTCCCGCGCGACGTATCCGCAAAATTTCCCAC
CAGGTGACAGTTGGTGGAGACCTTAACGATGACGTCGTCGCTTTCCGCGA
GGAGGCAGAAATACCGACGACTGCCTCGCGGCCACCGTCAGACGCAATCC
CCGACATCGTTACCCTGCCGCAGCAGCAATACCGCGGGCATAAAGAACAC
CCTTCCCCGCCCCGTACCACAGAGATCGGCACCGCCAACCCGGGCCTGCC
CCTTGACGCAACGCCCGCGCTATCCCTCAACGGCATTCTGGAGGACTATG
ACCGTTCTGACGTGGCGGTAGCGTTGGAGCGGAAGATTCCCGAGATTTCC
GCCGATTTTTCCGAGGATATTCCGGAGGTGGCACCCCGCGGGAAGAGTGG
AACTCCCCGCTGGCGTGACCGCGCGCGGGCGTGGTTTGGCGGCGGTGGCC
CCGGCGGTGATGCTGGCCGTGTTACCGGCGAGGACAGGTCCGACGTAGCA
AATGCAGGTGCTCTTGTTGGGGTGGACACCGATGCGATTGATGGCAATTT
TGTCGGTGCCGATGTTGCCAGGGATGGTCGGGACACCGCCATGGTCGGGA
ACGTCGTGGTTTCGAGTGAGGATACTGCTGGTGGCGTCGATGGCTTTGGC
GTGAACGGCGACGGTGGCGATGAGAGAAGCATCGCAGGTTGGACCGAGGG
CGGCGCTGCTGGCACCGATGCCATGCATACGGTAACTGACGCGTCTGAAG
TCTCTGCTGTCGACGGGCCTGAAATTGTTGCGGGTGCCGCAAAAAACGCC
GATGTGCCAGATACCGCGGCTATCGCTGCCGGTGTCATCGATGGCGGTTT
TGCTAGCGCCGATGCCATGGTAAAAGACGCGTCCGATGTCTCTACTGTCG
ACGGGTTCGGTTACGTTGCGGGTGCTACAAAACCAGCCGATGTACAGGAT
ACACCGGCTATCGATGCCGGTGTTTCCGGTGCCACGGCAAGTGACGGGGG
TACTACTTTTGCCACCGGCGATGCCGAATCTAGCGATGACATCTCCAGTG
TGCCGAATGAGGCGGAGGTCGACCGTGATAACGCTGCCGGAACGGCTGAC
CCCCGCAAGGGCACTCGGGACACGGCCTCGGTAGAGGGCGGCGCGGCGAT
CACGGCTGACTACGGTACCGGGGTGAAAAACGCCGCCGAGGTCGAATTCG
CCGCCGGTGTTCTAGTCGTTGCAGGGGGCGATGAAACCGTCGCGAGCGAG
TACGCGGCCGCCACGACCGCCGACACCGCCGATGCCACTAGCGCCTGCGG
AAATACTGTCAGCGATGATGCTCCGTGCACCCCTTCTGCTGCTAGTGCTG
TTGCATCCATGGGCGGCGGCGATGACGCATTGGCCGACGCCGATACCGAG
GATGCGGAAGACACCGCTGCGGTCGAACAGGGCAGCGGCGGCGGCACGGC
TAGCTCTGCCGCTTTCGATGTTGGGGCCACCGCGAACGCCGTGGCTGACC
ACCGCGAGACCGGTATTCCCGACTCTGTTGGTGAAGTCGTAGCCGCCACG
GATGACGATGGAACGGGCCGCAGCAACAGGGAAGGAACGATCAAGAGCGC
CAGCGATGGCATCGACGTGACACCAGCCACCTTTGCTAGCCTGCTCGGCG
CGGGCGGGCCTACTGCAGGCAATGGGGTCAAAACCGATTTCGGCGGCAGC
ACCAACGTCGGGACCACCGTGGACAGCGACAACAGCCCGCACCCGCCAGA
AAAAGAAACCGCCCTCTCCGATGCGCCTGGGCCCGACGACACCGGCAGAA
ACGACAACACTGGCGCTAGCGGCTCAGGGTACCGCGCACCGCGCCCCGAG
ATAACCCCAGAGTCAAGCCCCACACCTCCCCCCGATCCCCGTTCCCGCCC
AGCCCCAAGCGTCGGTCCGGATTCGGCGCCCACGCCTCCGTCGGGCCTTG
CCCCGACGGCAAGCACAACTCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8504:3476..6348+

>mRNA_S-dermatodea_contig8504.16675.1 ID=mRNA_S-dermatodea_contig8504.16675.1|Name=mRNA_S-dermatodea_contig8504.16675.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4074bp|location=Sequence derived from alignment at S-dermatodea_contig8504:3476..6348+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAAAGGTAGTAGGCGAGTCGCCGTCGGCTTCGTCTGTGCTGCTGTCGTC
GGCCGTGAAGGATTTCTCGGCCGCGGTCGGAGAGTTTTCGGAAGCTTCTC
AGGCGTGGATGGGGCAGGGAAAGGTAGTAGGCGAGTCGCCGTCGGCTTCG
TCTGTGCTGCTGTCGTCGGCCGTGAAGGATTTCTCGGCCGCGGTCGGAGA
GTTTTCGGAAGCTTCTCAGGCGTGGATGGGGCAGGTGACAGTTGGTGGAG
ACCTTAACGATGACGTCGTCGCTTTCCGCGAGGAGGCAGAAATACCGACG
ACTGCCTCGCGGCCACCGTCAGACGCAATCCCCGACATCGTTACCCTGCC
GCAGCAGCAATACCGCGGGCATAAAGAACACCCTTCCCCGCCCCGTACCA
CAGAGATCGGCACCGCCAACCCGGGCCTGCCCCTTGACGCAACGCCCGCG
CTATCCCTCAACGGCATTCTGGAGGACTATGACCGTTCTGACGTGGCGGT
AGCGTTGGAGCGGAAGATTCCCGAGATTTCCGCCGATTTTTCCGAGGATA
TTCCGGAGGTGGCACCCCGCGGGAAGAGTGGAACTCCCCGCTGGCGTGAC
CGCGCGCGGGCGTGGTTTGGCGGCGGTGGCCCCGGCGGTGATGCTGGCCG
TGTTACCGGCGAGGACAGGTCCGACGTAGCAAATGCAGGTGCTCTTGTTG
GGGTGGACACCGATGCGATTGATGGCAATTTTGTCGGTGCCGATGTTGCC
AGGGATGGTCGGGACACCGCCATGGTCGGGAACGTCGTGGTTTCGAGTGA
GGATACTGCTGGTGGCGTCGATGGCTTTGGCGTGAACGGCGACGGTGGCG
ATGAGAGAAGCATCGCAGGTTGGACCGAGGGCGGCGCTGCTGGCACCGAT
GCCATGCATACGGTAACTGACGCGTCTGAAGTCTCTGCTGTCGACGGGCC
TGAAATTGTTGCGGGTGCCGCAAAAAACGCCGATGTGCCAGATACCGCGG
CTATCGCTGCCGGTGTCATCGATGGCGGTTTTGCTAGCGCCGATGCCATG
GTAAAAGACGCGTCCGATGTCTCTACTGTCGACGGGTTCGGTTACGTTGC
GGGTGCTACAAAACCAGCCGATGTACAGGATACACCGGCTATCGATGCCG
GTGTTTCCGGTGCCACGGCAAGTGACGGGGGTACTACTTTTGCCACCGGC
GATGCCGAATCTAGCGATGACATCTCCAGTGTGCCGAATGAGGCGGAGGT
CGACCGTGATAACGCTGCCGGAACGGCTGACCCCCGCAAGGGCACTCGGG
ACACGGCCTCGGTAGAGGGCGGCGCGGCGATCACGGCTGACTACGGTACC
GGGGTGAAAAACGCCGCCGAGGTCGAATTCGCCGCCGGTGTTCTAGTCGT
TGCAGGGGGCGATGAAACCGTCGCGAGCGAGTACGCGGCCGCCACGACCG
CCGACACCGCCGATGCCACTAGCGCCTGCGGAAATACTGTCAGCGATGAT
GCTCCGTGCACCCCTTCTGCTGCTAGTGCTGTTGCATCCATGGGCGGCGG
CGATGACGCATTGGCCGACGCCGATACCGAGGATGCGGAAGACACCGCTG
CGGTCGAACAGGGCAGCGGCGGCGGCACGGCTAGCTCTGCCGCTTTCGAT
GTTGGGGCCACCGCGAACGCCGTGGCTGACCACCGCGAGACCGGTATTCC
CGACTCTGTTGGTGAAGTCGTAGCCGCCACGGATGACGATGGAACGGGCC
GCAGCAACAGGGAAGGAACGATCAAGAGCGCCAGCGATGGCATCGACGTG
ACACCAGCCACCTTTGCTAGCCTGCTCGGCGCGGGCGGGCCTACTGCAGG
CAATGGGGTCAAAACCGATTTCGGCGGCAGCACCAACGTCGGGACCACCG
TGGACAGCGACAACAGCCCGCACCCGCCAGAAAAAGAAACCGCCCTCTCC
GATGCGCCTGGGCCCGACGACACCGGCAGAAACGACAACACTGGCGCTAG
CGGCTCAGGGTACCGCGCACCGCGCCCCGAGATAACCCCAGAGTCAAGCC
CCACACCTCCCCCCGATCCCCGTTCCCGCCCAGCCCCAAGCGTCGGTCCG
GATTCGGCGCCCACGCCTCCGTCGGGCCTTGCCCCGACGGCAAGCACAAC
TCCCGTGACAGTTGGTGGAGACCTTAACGATGACGTCGTCGCTTTCCGCG
AGGAGGCAGAAATACCGACGACTGCCTCGCGGCCACCGTCAGACGCAATC
CCCGACATCGTTACCCTGCCGCAGCAGCAATACCGCGGGCATAAAGAACA
CCCTTCCCCGCCCCGTACCACAGAGATCGGCACCGCCAACCCGGGCCTGC
CCCTTGACGCAACGCCCGCGCTATCCCTCAACGGCATTCTGGAGGACTAT
GACCGTTCTGACGTGGCGGTAGCGTTGGAGCGGAAGATTCCCGAGATTTC
CGCCGATTTTTCCGAGGATATTCCGGAGGTGGCACCCCGCGGGAAGAGTG
GAACTCCCCGCTGGCGTGACCGCGCGCGGGCGTGGTTTGGCGGCGGTGGC
CCCGGCGGTGATGCTGGCCGTGTTACCGGCGAGGACAGGTCCGACGTAGC
AAATGCAGGTGCTCTTGTTGGGGTGGACACCGATGCGATTGATGGCAATT
TTGTCGGTGCCGATGTTGCCAGGGATGGTCGGGACACCGCCATGGTCGGG
AACGTCGTGGTTTCGAGTGAGGATACTGCTGGTGGCGTCGATGGCTTTGG
CGTGAACGGCGACGGTGGCGATGAGAGAAGCATCGCAGGTTGGACCGAGG
GCGGCGCTGCTGGCACCGATGCCATGCATACGGTAACTGACGCGTCTGAA
GTCTCTGCTGTCGACGGGCCTGAAATTGTTGCGGGTGCCGCAAAAAACGC
CGATGTGCCAGATACCGCGGCTATCGCTGCCGGTGTCATCGATGGCGGTT
TTGCTAGCGCCGATGCCATGGTAAAAGACGCGTCCGATGTCTCTACTGTC
GACGGGTTCGGTTACGTTGCGGGTGCTACAAAACCAGCCGATGTACAGGA
TACACCGGCTATCGATGCCGGTGTTTCCGGTGCCACGGCAAGTGACGGGG
GTACTACTTTTGCCACCGGCGATGCCGAATCTAGCGATGACATCTCCAGT
GTGCCGAATGAGGCGGAGGTCGACCGTGATAACGCTGCCGGAACGGCTGA
CCCCCGCAAGGGCACTCGGGACACGGCCTCGGTAGAGGGCGGCGCGGCGA
TCACGGCTGACTACGGTACCGGGGTGAAAAACGCCGCCGAGGTCGAATTC
GCCGCCGGTGTTCTAGTCGTTGCAGGGGGCGATGAAACCGTCGCGAGCGA
GTACGCGGCCGCCACGACCGCCGACACCGCCGATGCCACTAGCGCCTGCG
GAAATACTGTCAGCGATGATGCTCCGTGCACCCCTTCTGCTGCTAGTGCT
GTTGCATCCATGGGCGGCGGCGATGACGCATTGGCCGACGCCGATACCGA
GGATGCGGAAGACACCGCTGCGGTCGAACAGGGCAGCGGCGGCGGCACGG
CTAGCTCTGCCGCTTTCGATGTTGGGGCCACCGCGAACGCCGTGGCTGAC
CACCGCGAGACCGGTATTCCCGACTCTGTTGGTGAAGTCGTAGCCGCCAC
GGATGACGATGGAACGGGCCGCAGCAACAGGGAAGGAACGATCAAGAGCG
CCAGCGATGGCATCGACGTGACACCAGCCACCTTTGCTAGCCTGCTCGGC
GCGGGCGGGCCTACTGCAGGCAATGGGGTCAAAACCGATTTCGGCGGCAG
CACCAACGTCGGGACCACCGTGGACAGCGACAACAGCCCGCACCCGCCAG
AAAAAGAAACCGCCCTCTCCGATGCGCCTGGGCCCGACGACACCGGCAGA
AACGACAACACTGGCGCTAGCGGCTCAGGGTACCGCGCACCGCGCCCCGA
GATAACCCCAGAGTCAAGCCCCACACCTCCCCCCGATCCCCGTTCCCGCC
CAGCCCCAAGCGTCGGTCCGGATTCGGCGCCCACGCCTCCGTCGGGCCTT
GCCCCGACGGCAAGCACAACTCCC
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