mRNA_S-dermatodea_contig85025.16672.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85025.16672.1
Unique NamemRNA_S-dermatodea_contig85025.16672.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig85025.16672.1 vs. uniprot
Match: D8LC27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC27_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 5.540e-20
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:   25 VQVTHGAASFEAGDSVILTLKDQGLLEEDEHGQATGLADGEDELENVNMKEAEVR 189
            ++VTHGAASFEAGDSVILTLKDQGLL+EDEHG+ TGL D EDELENV+MKEAE R
Sbjct:  284 LKVTHGAASFEAGDSVILTLKDQGLLDEDEHGRVTGLKDDEDELENVHMKEAERR 338
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BLAST of mRNA_S-dermatodea_contig85025.16672.1 vs. uniprot
Match: A0A836C9M6_9STRA (SART-1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.960e-12
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   25 VQVTHGAASFEAGDSVILTLKDQGLLEEDEHGQATGLADGEDELENVNMKEAEVR 189
            ++V HGA +F+ GDS ILTLKD  +LE D+HG   GLADGEDELENV M EA+ R
Sbjct:  231 LRVAHGADAFDLGDSAILTLKDAEVLETDDHGVVRGLADGEDELENVAMTEAQRR 285
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BLAST of mRNA_S-dermatodea_contig85025.16672.1 vs. uniprot
Match: A0A7S3AXM7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AXM7_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 1.460e-6
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   28 QVTHGAASFEAGDSVILTLKDQGLLEEDEHGQATGLADGEDELENVNMKE 177
            QV HG   F+AG+SV+LTL DQ +LEED  G +  L + ED LENVNM E
Sbjct:   58 QVGHGVDDFKAGESVVLTLADQSVLEED--GNSYALNESEDMLENVNMAE 105
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85025.16672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LC27_ECTSI5.540e-2083.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9M6_9STRA3.960e-1263.64SART-1 family-domain-containing protein n=1 Tax=Tr... [more]
A0A7S3AXM7_9EUKA1.460e-658.00Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85025contigS-dermatodea_contig85025:230..418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog2880.D8LC27
Preferred nameSART1
KEGG koko:K01301,ko:K11984,ko:K12811,ko:K12836,ko:K12858
KEGG Pathwayko03040,ko05131,map03040,map05131
KEGG ModuleM00354
GOsGO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000481,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005794,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016604,GO:0016607,GO:0019222,GO:0022407,GO:0022409,GO:0022607,GO:0022613,GO:0022618,GO:0030155,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045580,GO:0045582,GO:0045583,GO:0045585,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045785,GO:0046483,GO:0046540,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0051094,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902105,GO:1902107,GO:1902494,GO:1903037,GO:1903039,GO:1903706,GO:1903708,GO:1990904,GO:2000026
EggNOG free text desc.maturation of 5S rRNA
EggNOG OGsKOG2217@1,KOG2217@2759
Ec32 ortholog descriptionSART-1 protein
Ec32 orthologEc-20_004200.1
EC3.4.17.21,3.6.4.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.9429817-CDS-S-dermatodea_contig85025:229..4181622925347.9429817-CDS-S-dermatodea_contig85025:229..418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85025 230..418 -
1694079872.483512-CDS-S-dermatodea_contig85025:229..4181694079872.483512-CDS-S-dermatodea_contig85025:229..418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85025 230..418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85025.16672.1prot_S-dermatodea_contig85025.16672.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85025 230..418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85025.16672.1

>prot_S-dermatodea_contig85025.16672.1 ID=prot_S-dermatodea_contig85025.16672.1|Name=mRNA_S-dermatodea_contig85025.16672.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=63bp
SLLSLESLVQVTHGAASFEAGDSVILTLKDQGLLEEDEHGQATGLADGED
ELENVNMKEAEVR
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mRNA from alignment at S-dermatodea_contig85025:230..418-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85025.16672.1 ID=mRNA_S-dermatodea_contig85025.16672.1|Name=mRNA_S-dermatodea_contig85025.16672.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at S-dermatodea_contig85025:230..418- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTTGTTGTCGCTCGAATCTCTCGTCCAGGTGACCCACGGCGCTGCTTC
TTTCGAGGCCGGCGACTCCGTAATCCTGACGCTCAAGGACCAGGGCTTGC
TGGAGGAAGACGAGCACGGCCAGGCTACGGGTCTAGCCGACGGGGAGGAT
GAGCTCGAAAACGTCAACATGAAGGAGGCAGAGGTGCGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig85025:230..418-

>mRNA_S-dermatodea_contig85025.16672.1 ID=mRNA_S-dermatodea_contig85025.16672.1|Name=mRNA_S-dermatodea_contig85025.16672.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at S-dermatodea_contig85025:230..418- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTTGTTGTCGCTCGAATCTCTCGTCCAGGTGACCCACGGCGCTGCTTC
TTTCGAGGCCGGCGACTCCGTAATCCTGACGCTCAAGGACCAGGGCTTGC
TGGAGGAAGACGAGCACGGCCAGGCTACGGGTCTAGCCGACGGGGAGGAT
GAGCTCGAAAACGTCAACATGAAGGAGGCAGAGGTGCGTAGTTTGTTGTC
GCTCGAATCTCTCGTCCAGGTGACCCACGGCGCTGCTTCTTTCGAGGCCG
GCGACTCCGTAATCCTGACGCTCAAGGACCAGGGCTTGCTGGAGGAAGAC
GAGCACGGCCAGGCTACGGGTCTAGCCGACGGGGAGGATGAGCTCGAAAA
CGTCAACATGAAGGAGGCAGAGGTGCGT
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