mRNA_S-dermatodea_contig850.16670.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig850.16670.1
Unique NamemRNA_S-dermatodea_contig850.16670.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig850.16670.1 vs. uniprot
Match: A0A6H5L687_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L687_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 7.930e-97
Identity = 164/233 (70.39%), Postives = 181/233 (77.68%), Query Frame = 3 
Query:   72 ILCALLWTPHVSAFVVPLAATGSEQQHRLSPRGSQGVAR------ATATMSH-GDA-PVSRRSLLEGVSTTLAGSMAFLAVQPPPAEAKIERIKGGGPMVTLEDGAQYQEMTLGDGATPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLGYTCGTISGPGSVPAGLDECVKGMRVGGRRKMILPPNLAFGKDGRPPFIPGDATVQFDVSLWSVKPAGTDPNVTLPGSSLY 746
            +LCAL   P   AF  P+A+    Q     PRGS G+A       A   MSH G+  P+SRRSL+E VS TLA S A +  QP PA AK ERIKGGGP+VTLEDGA Y+EMT+GDG +PKDGDRVAVHYSLFY GLEVESSRDSQGLAARPLGYT GT++GPGSVP GLDE VKGMRVGGRRKM LPP LAFGK+GRPPFIP DATV  DVSLWSVKPAGTDPNVTLPGSS++
Sbjct:    6 VLCALSGVPGSLAFFSPMASPSFTQ-----PRGSGGLAARPTSIAAAVVMSHDGEGLPISRRSLVERVSATLAASAALITAQPSPAAAKPERIKGGGPLVTLEDGASYREMTIGDGPSPKDGDRVAVHYSLFYKGLEVESSRDSQGLAARPLGYTVGTVNGPGSVPPGLDEIVKGMRVGGRRKMTLPPQLAFGKEGRPPFIPPDATVDMDVSLWSVKPAGTDPNVTLPGSSVF 233
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BLAST of mRNA_S-dermatodea_contig850.16670.1 vs. uniprot
Match: A0A4D9CYF4_9STRA (Peptidylprolyl isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYF4_9STRA)

HSP 1 Score: 200 bits (508), Expect = 4.330e-56
Identity = 110/201 (54.73%), Postives = 139/201 (69.15%), Query Frame = 3 
Query:  162 PRGSQGVARATATMSHGDAPV-SRRSLLEGVSTTLAGSMAFLA----VQPPPAEAK-IERIKGGGPMVTLEDGAQYQEMTLGDGATPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLGYTCGTISGPGSVPAGLDECVKGMRVGGRRKMILPPNLAFGKDGRPPFIPGDATVQFDVSLWSVKPAGTDPNVTLPGSSLY 746
            P   +G ARA+  M    A   SRRS++        GS+A  A      P PA AK ++R+K   P+V L  G +YQ+M++G GATP+ GDRVAVHYSL+YNGLEVESSRDS GLAARP G+  G+ SG GS+  G+   ++GM++GGRRK+ +P  LAFGK G PPFIPGDATV FDVS+WS+KPAG +PN+TLPG   Y
Sbjct:   14 PNIGRGAARASIRMKASRAQQDSRRSMINKTLLGALGSVALTAGSVSTAPLPAAAKGVKRLKNA-PVVKLPSGVEYQDMSIGSGATPQLGDRVAVHYSLYYNGLEVESSRDSSGLAARPYGFNWGSGSGSGSICKGVQLGMEGMQIGGRRKITVPSELAFGKKGLPPFIPGDATVLFDVSIWSIKPAGVNPNLTLPGQQNY 213
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BLAST of mRNA_S-dermatodea_contig850.16670.1 vs. uniprot
Match: A0A836CDH4_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDH4_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.070e-52
Identity = 100/170 (58.82%), Postives = 121/170 (71.18%), Query Frame = 3 
Query:  219 PVSRRSLLEGVSTTLAGSMAFLAVQPPP-AEAKIERIKGGGPMVTLEDGAQYQEMTLGDGATPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLGYTCGTISGPGSVPAGLDECVKGMRVGGRRKMILPPNLAFGKDGRPPFIPGDATVQFDVSLWSVKPAGTDPNVT 725
            P +RR+ LE      AG  A +AV  P  A AK  R+K G P + L  G  YQ+MT+GDG  P++GDRVA+HYSLF  G +VESSR+S GLAARPLG+  GT +GPGSVP GL   ++GM+VGGRRK+ +PP LAFG+ GR PFIP +  V FDVSLWSVKP GTDPN T
Sbjct:   31 PQNRRAFLE------AGGFAAVAVLAPTCAGAKTTRVKDG-PKIALPSGVIYQDMTVGDGVIPREGDRVAIHYSLFCKGFQVESSRESSGLAARPLGFNYGTEAGPGSVPKGLQLGMEGMKVGGRRKITVPPELAFGEKGREPFIPPNTPVMFDVSLWSVKPKGTDPNFT 193
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BLAST of mRNA_S-dermatodea_contig850.16670.1 vs. uniprot
Match: A0A6T5QYZ8_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QYZ8_HETAK)

HSP 1 Score: 180 bits (457), Expect = 5.300e-49
Identity = 92/172 (53.49%), Postives = 121/172 (70.35%), Query Frame = 3 
Query:  231 RSLLEGVSTTLAGSMAFLAVQPPPAEAKIERIKGGGPMVTLEDGAQYQEMTLGDGATPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLGYTCGTISGPGSVPAGLDECVKGMRVGGRRKMILPPNLAFGKDGRPPFIPGDATVQFDVSLWSVKPAGTDPNVTLPGSSLY 746
            + L+E  S   A +++F +     AEAK  R     P+ TLE+G +YQEM +GDG +PK GDR A+HYS++YNG+EVESSRDS GLAA PLG+  G      +VP  L + + GM+VGGRRK+ +P  LA+G+ G PPFIP +A V FD+SLWSVKPAG++PN+TLPG S Y
Sbjct:   34 KELVESSSIVGAAALSFGSQ----AEAKGSRRVKNAPIETLENGIKYQEMAIGDGPSPKKGDRCAIHYSIYYNGMEVESSRDSSGLAATPLGFNMGERFNR-NVPKSLQDAIYGMQVGGRRKVTIPGELAYGEAGYPPFIPKNAEVMFDISLWSVKPAGSNPNLTLPGQSNY 200
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BLAST of mRNA_S-dermatodea_contig850.16670.1 vs. uniprot
Match: A0A7S2V053_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V053_9STRA)

HSP 1 Score: 165 bits (418), Expect = 7.100e-43
Identity = 89/171 (52.05%), Postives = 113/171 (66.08%), Query Frame = 3 
Query:  228 RRSLLEGVSTTLAGSMAFLAVQPPPAEAKIERIKGGGPMVTLEDGAQYQEMTLGDGATPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLGYTCGTISGPGSVPAGLDECVKGMRVGGRRKMILPPNLAFGKDGRPPFIPGDATVQFDVSLWSVKPAGTDPNVTLPGSS 740
            RR  L   +  LA S+  L + P P EAK  R+K    +   E GAQ+Q+MT+GDG  PK GDRV VH+SLF  G+E+ES+RDSQGLAARP G+      G   +P  +   ++GMRVGGRRK+ LP + AFG+ G PP IP +  V +D+SLWSVKPAGT+PNVT  G S
Sbjct:   79 RRHFLSLATRGLAASV-VLGMIPNPGEAKPMRVKDAPRVDIGEKGAQFQDMTIGDGPEPKAGDRVVVHFSLFCKGIEIESTRDSQGLAARPYGFDFLVDGGAPRLPGIVPSALQGMRVGGRRKIYLPADEAFGEKGYPPLIPPNTPVTYDISLWSVKPAGTNPNVTKFGQS 248
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BLAST of mRNA_S-dermatodea_contig850.16670.1 vs. uniprot
Match: A0A7S0BNZ8_9RHOD (Peptidylprolyl isomerase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNZ8_9RHOD)

HSP 1 Score: 160 bits (406), Expect = 9.480e-42
Identity = 88/181 (48.62%), Postives = 122/181 (67.40%), Query Frame = 3 
Query:  213 DAPVSRRSLLEGVSTTLAGSMAFLAVQPPPAEAK---IERIKGGGPMVTLEDGAQYQEMTLGDGATPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLGYTCGTISGPGSVPAGLDECVKGMRVGGRRKMILPPNLAFGKDGRPPFIPGDATVQFDVSLWSVKPAGTDPNVTLPGSSLY 746
            D  VSRR  +E     + G +    VQ    +A+   ++R+K G P+ T +DG  Y+E+  GDG +P  GD VA+HYSLF +G+EVE+SR+SQGLAARPL +T G   GPGS+  G+   + GM+VGG+R +ILPP LA+G+ GRPP IP ++ V+F VSL SVK  G++PNV+   SS+Y
Sbjct:   29 DGGVSRRRAMELAGGAVLGVVLGGTVQGGMKDAEAMSLKRLKMGPPVET-QDGVVYREIKTGDGYSPNQGDTVAIHYSLFCDGIEVETSRESQGLAARPLAFTWGVARGPGSILKGVPMGMDGMKVGGQRMIILPPELAYGEKGRPPLIPPNSNVEFAVSLLSVKRMGSNPNVSSSKSSVY 208
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BLAST of mRNA_S-dermatodea_contig850.16670.1 vs. uniprot
Match: R7QK44_CHOCR (Peptidylprolyl isomerase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK44_CHOCR)

HSP 1 Score: 157 bits (398), Expect = 2.680e-41
Identity = 82/158 (51.90%), Postives = 110/158 (69.62%), Query Frame = 3 
Query:  282 LAVQPPPAEAKIER--IKGGGPMVTLEDGAQYQEMTLGDGATPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLGYTCGTISGPGSVPAGLDECVKGMRVGGRRKMILPPNLAFGKDGRPPFIPGDATVQFDVSLWSVKPAGTDP-NVTLPGSSLY 746
            + + PP A+A  ++  +   GP VTL  G  Y+++++G G TP+ GD VA+HYSLF+  LEVESSR+SQGLAA P+G+T G  SGPGS+  G+ E + GM+VGG R M +PP LAFG+ GR P IP +ATV F VSL S K AGT+P +V  P + +Y
Sbjct:    1 MVLLPPHAQALSKKRILAKAGPPVTLPSGITYRDISIGKGYTPRPGDSVAIHYSLFFKDLEVESSRESQGLAASPVGFTFGATSGPGSIMRGISEGMDGMKVGGLRLMTVPPELAFGQKGRMPLIPSNATVDFAVSLLSCKKAGTNPISVIDPKAQVY 158
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BLAST of mRNA_S-dermatodea_contig850.16670.1 vs. uniprot
Match: A0A2V3IEK3_9FLOR (Peptidylprolyl isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEK3_9FLOR)

HSP 1 Score: 154 bits (389), Expect = 3.260e-39
Identity = 83/171 (48.54%), Postives = 113/171 (66.08%), Query Frame = 3 
Query:  207 HGDAPVSRRSLLEGVSTTLAGSMAFLAVQPPPAEAKIERIKGGGPMVTLEDGAQYQEMTLGDGATPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLGYTCGTISGPGSVPAGLDECVKGMRVGGRRKMILPPNLAFGKDGRPPFIPGDATVQFDVSLWSVKPAGTDPN 719
            H    +SRR+LL  ++  +A + A    +   A  K   +   GP+V L  G  Y+++T+G G  P++GD VA+HYSLFY  LEVESSR+SQGLAA PLG+T G  SGPGS+  G+   ++GMRVGG R + +PP LA+G  G+ P IPG++TV F VSL S K AGT+P+
Sbjct:   45 HAPTTLSRRNLL-AITAAIAATTAL--PEQSFALTKKRILAKAGPLVELPSGVTYRDVTIGKGYEPRNGDTVAIHYSLFYKDLEVESSRESQGLAASPLGFTFGATSGPGSIMRGVTVGMEGMRVGGLRLITVPPELAYGAKGKAPLIPGNSTVDFAVSLLSCKRAGTNPS 212
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BLAST of mRNA_S-dermatodea_contig850.16670.1 vs. uniprot
Match: A0A0G4F8W6_VITBC (Peptidylprolyl isomerase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8W6_VITBC)

HSP 1 Score: 152 bits (383), Expect = 2.390e-38
Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 3 
Query:  222 VSRRSLL-EGVSTTLAGSMAFLAVQPPPAEAKIERIKGGGPMVTLEDGAQYQEMTLGDGATPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLGYTCGTISGPGSVPAGLDECVKGMRVGGRRKMILPPNLAFGKDGRPPFIPGDATVQFDVSLWSVKPAGTDPNVTLPGSSLY 746
            V RRSLL   +   LA  +A     P PA A ++R K     V L++G +YQ++ LGDG   + GD VA+HYSLF NG+EVES+RDS GLAARP G+T G       +P  L++ ++GM+VGGRRK++LP   A+G+ GR   +P +  V+FDV++WSVK AGT+PN+TLPGS  +
Sbjct:   56 VDRRSLLLRPLGALLAAGIAL----PLPAAAGVKRCKNCA-AVELDNGVRYQDVLLGDGNQLEVGDTVAIHYSLFCNGIEVESTRDSSGLAARPFGFTYGGDFNR-KIPKALEDALEGMKVGGRRKVVLPSAEAYGEKGRG-MVPPNTPVEFDVTVWSVKKAGTNPNLTLPGSQNF 224
[Close]
BLAST of mRNA_S-dermatodea_contig850.16670.1 vs. uniprot
Match: A0A5J4YNQ5_PORPP (Peptidylprolyl isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNQ5_PORPP)

HSP 1 Score: 151 bits (382), Expect = 1.080e-37
Identity = 87/187 (46.52%), Postives = 124/187 (66.31%), Query Frame = 3 
Query:  201 MSHGDAPVSRRSLLEGVSTTLAGSMAFLAVQPPPAEAKIER-IKGGGPMVTLE----DGAQYQEMTLGDGATPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLGYTCGTISGPGSVPAGLDECVKGMRVGGRRKMILPPNLAFGKDGRPPFIPGDATVQFDVSLWSVKPAGTDPNVTLPGSSLY 746
            ++  +A VSRR+ L   +  +  +M+ LA+ P PA A  +R +K     +  E     G +++E+T+G G  P+DGD+VA+H+SLFYN LEVESSR+SQGLAA P G+T G  SGPGS   G++  + GM+VGG R + +P N AFGK G+ P IP DATV++ V L S K +GT+ NV+  GSS++
Sbjct:   83 LARAEAVVSRRTAL-AQALAVGSAMSSLALVPLPAYALSKRRLKFKTDWLPAEKVPESGVRFREITVGSGIEPRDGDQVAIHFSLFYNDLEVESSRESQGLAASPYGFTFGRSSGPGSTVPGINIGMAGMKVGGLRLIEIPANYAFGKRGKKPMIPPDATVEYAVQLLSCKRSGTNTNVSGIGSSMF 268
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig850.16670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L687_9PHAE7.930e-9770.39Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A4D9CYF4_9STRA4.330e-5654.73Peptidylprolyl isomerase n=1 Tax=Nannochloropsis s... [more]
A0A836CDH4_9STRA2.070e-5258.82Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A6T5QYZ8_HETAK5.300e-4953.49Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
A0A7S2V053_9STRA7.100e-4352.05Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
A0A7S0BNZ8_9RHOD9.480e-4248.62Peptidylprolyl isomerase n=2 Tax=Rhodosorus marinu... [more]
R7QK44_CHOCR2.680e-4151.90Peptidylprolyl isomerase n=1 Tax=Chondrus crispus ... [more]
A0A2V3IEK3_9FLOR3.260e-3948.54Peptidylprolyl isomerase n=1 Tax=Gracilariopsis ch... [more]
A0A0G4F8W6_VITBC2.390e-3848.86Peptidylprolyl isomerase n=1 Tax=Vitrella brassica... [more]
A0A5J4YNQ5_PORPP1.080e-3746.52Peptidylprolyl isomerase n=1 Tax=Porphyridium purp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig850contigS-dermatodea_contig850:8936..15718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score306.2
Seed ortholog evalue1.3e-80
Seed eggNOG ortholog2880.D8LJL8
KEGG koko:K01802
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009579,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031977,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044436,GO:0044444,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorychloroplast
Exons6
Model size2161
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig850.16670.1prot_S-dermatodea_contig850.16670.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig850 8992..14306 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.7513716-UTR-S-dermatodea_contig850:8935..89911622925347.7513716-UTR-S-dermatodea_contig850:8935..8991Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig850 8936..8991 +
1694079872.3732257-UTR-S-dermatodea_contig850:8935..89911694079872.3732257-UTR-S-dermatodea_contig850:8935..8991Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig850 8936..8991 +
1622925347.8440514-UTR-S-dermatodea_contig850:14306..157181622925347.8440514-UTR-S-dermatodea_contig850:14306..15718Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig850 14307..15718 +
1694079872.4434447-UTR-S-dermatodea_contig850:14306..157181694079872.4434447-UTR-S-dermatodea_contig850:14306..15718Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig850 14307..15718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.7644339-CDS-S-dermatodea_contig850:8991..90841622925347.7644339-CDS-S-dermatodea_contig850:8991..9084Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig850 8992..9084 +
1694079872.3893998-CDS-S-dermatodea_contig850:8991..90841694079872.3893998-CDS-S-dermatodea_contig850:8991..9084Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig850 8992..9084 +
1622925347.7751806-CDS-S-dermatodea_contig850:11874..119351622925347.7751806-CDS-S-dermatodea_contig850:11874..11935Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig850 11875..11935 +
1694079872.3993185-CDS-S-dermatodea_contig850:11874..119351694079872.3993185-CDS-S-dermatodea_contig850:11874..11935Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig850 11875..11935 +
1622925347.7875407-CDS-S-dermatodea_contig850:12133..123731622925347.7875407-CDS-S-dermatodea_contig850:12133..12373Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig850 12134..12373 +
1694079872.4083796-CDS-S-dermatodea_contig850:12133..123731694079872.4083796-CDS-S-dermatodea_contig850:12133..12373Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig850 12134..12373 +
1622925347.8032985-CDS-S-dermatodea_contig850:12639..127701622925347.8032985-CDS-S-dermatodea_contig850:12639..12770Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig850 12640..12770 +
1694079872.4171762-CDS-S-dermatodea_contig850:12639..127701694079872.4171762-CDS-S-dermatodea_contig850:12639..12770Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig850 12640..12770 +
1622925347.8162055-CDS-S-dermatodea_contig850:13389..134781622925347.8162055-CDS-S-dermatodea_contig850:13389..13478Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig850 13390..13478 +
1694079872.4257753-CDS-S-dermatodea_contig850:13389..134781694079872.4257753-CDS-S-dermatodea_contig850:13389..13478Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig850 13390..13478 +
1622925347.8336794-CDS-S-dermatodea_contig850:14227..143061622925347.8336794-CDS-S-dermatodea_contig850:14227..14306Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig850 14228..14306 +
1694079872.4339566-CDS-S-dermatodea_contig850:14227..143061694079872.4339566-CDS-S-dermatodea_contig850:14227..14306Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig850 14228..14306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig850.16670.1

>prot_S-dermatodea_contig850.16670.1 ID=prot_S-dermatodea_contig850.16670.1|Name=mRNA_S-dermatodea_contig850.16670.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=231bp
MTRMLILCALLWTPHVSAFVVPLAATGSEQQHRLSPRGSQGVARATATMS
HGDAPVSRRSLLEGVSTTLAGSMAFLAVQPPPAEAKIERIKGGGPMVTLE
DGAQYQEMTLGDGATPKDGDRVAVHYSLFYNGLEVESSRDSQGLAARPLG
YTCGTISGPGSVPAGLDECVKGMRVGGRRKMILPPNLAFGKDGRPPFIPG
DATVQFDVSLWSVKPAGTDPNVTLPGSSLY*
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mRNA from alignment at S-dermatodea_contig850:8936..15718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig850.16670.1 ID=mRNA_S-dermatodea_contig850.16670.1|Name=mRNA_S-dermatodea_contig850.16670.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6783bp|location=Sequence derived from alignment at S-dermatodea_contig850:8936..15718+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGAAGGAAGCTCAAGCAGCGCAGCATAGCAGCCACCTGGCACCGCACG
ACGAATATGACGAGGATGCTGATACTGTGCGCCCTCCTTTGGACCCCCCA
CGTCTCCGCGTTCGTGGTTCCCTTAGCTGCCACCGGCTCGGAACAGCAGG
TAGGCAATGCGTAGCTATGATCGAGTGCGGCCTTATCGGCGTATTTCTAA
ATCGCACCGCATCTTGCTTATATATGTTTGCTCGTGCTTCGGTGTCGCCC
TCAGATGAGAGGGCCCAGCGAGACACACACATACACAAGACGATGGTACT
GCTGCCAAACTCAGGCGTTAGGGATGTTCTGCATGCCTGCTTCCCTTATG
TAGGATTCTTGGACTGGATTTGCGGGCGCTCATAGTTTCGGGGGGGTAGT
TTGTTCCGTGTCGACGTGTGCATGCAGCAACTCCAAGGCCATCTGCACAT
GTTCATGTACGACGGGTTATTTTTGCTCTGGACGCAGTCGTACACTCCCC
CTGGTCATACAGCTGTTCTATGCACGTGAGGACCTAACTCCCCAACTAAG
TGCTTGTGCGTGGTGCTGTGGCGGCGGGTTTAGATCTCCCTTCCATCGAC
CAATATATCAGATAGGCTTGCGTATTACAGTACTGTTTCGCAAGTTTGAT
TATTTGCAAACAAATACGAGTAATGATAGTCTTGCTTGCAACAACGTAAT
TTTTTTATTAAGATTTTTAGAGAAGGATTAGTGTCCAGCGAAACCCCTAT
GATTTCTGTCCAGCGAATACATGATTTCTGTACTATTTTTTGTAGCGATT
TTAGAGAAGGATCTTGATGCAAATAACTTGATGTTTGTGTTGAGCTACAA
CGCTACAACGCTCGGTTGAGTCGCTCCCTCGCAGCCTCAGCCAGCTGCAC
AGCAGCACACACCACACTACCCACAGCAGCGAGCAGCGAGCAGCCTGCGG
CAGCGAGCAGCGTGAGGCCGACAGCAGCCAGCAGCGCGTAGCAGCCAGCA
GCGCGCACCAGCGCCCACCACACCAGGCAGCAGCGAGCAACGCAAATACA
CCGGGCCGCCAGAACAGCCAGCAGCCTTATGTAGAAACACTTGATTTTTT
GCATCTCGAGACACCTGGACAGCTGTGCACACACCACACTACCCACAGCA
GCGAGCAGCGTGCAGCAGCCAGCAGCGTGAGGCCCACAGCAACCAGCAGC
GTGCACCAGCGCCCACCAGGTAGCAGCGAGCAACGCAAACACACCGGGCC
GCCTGAGGCAACAGCCAGCAGCCTCATGTAGAAACACTTGTTTTTTGTGC
ATCTCGAGACACCTGGACAGCTGCACACACCACACTACCCCCAGCAGCGA
GCAGCGTGAAGCCCACGGTGGCGGTTCGCGGACGCACGCACTGTCTTCCG
CGCTTCCCCCTGTCGCTCGGTGGAGGTTCGCCCGTAACGGCTCGCAGGTC
ACACACAGGACAACACACGCCACGCACACAAGTTTGATACAAGTATATTA
CTTCGAAGTATATATTTTTCTTGGGGTCTCTTTTTATCTTTATTGATAAC
GGCGCTTTGTCCGATTTTTTGCGATTTAGACAAGGATTATTTTCAGCGAA
TCCTATGTGACTATATTAGTCATGCCAAACCAAACAACATAAAGTTTGTG
TTGACCGATATTTTTGTTGAGCGCTCTGCCCGGTTTTTTAAAAGCGACTT
AGAGAAGGATTCTTTCCAGCAAATCCAATATGATCAGTATGATATATCGC
TCCCTGTAGCTTCCACGTCGCCCCCACCCCCGCACCGCCACAGGCAGCAA
CACGTCCACCGTGGGTTAACGCCTGCCGTGGGCACTACCGCCACCGCCCC
ATCGTCCTGCCCTCGCACACCCCACGGACGTAGCCGTGGCTGCCTACTAG
TTTTAGTATAACAAGTACTGACGGCGAGACAAGCGACCTGCAGTAGGTAC
AAGTGTGACCATGCTTCTCCGTACCCAGATGATACCTAACCAATGTATTT
CCCATCCCCGCGTGGATGCGGGCGCGCGCCACATACAAACAGTTGTACTG
ATGCTGATCACCGCCTAGGTCCCCTACGCATAGCGGAACAACGCGCCTCG
TGGGTTACCACGGTAGTCCTCAAATGGTATGTGTAGCCAGGAGCGTCTAT
ACCTCACCAGAAGATAGCCAACGAATGTATTTCCCAACTCCATGTGGGTG
CGGGCGTGCGCTACACGCTACATGCTATACTGATGCTATCACCACCTATG
TCATAAGCATAGCGGAGCAACGCGCCTTGTGGGCTACCACGGCAGTCGTC
AAATGACATGTTTAGCCAGGAGCGTCTAGACCCCACCAATCGGGGCGTGA
ACCCCGCTACTAGTGTAGGCGAGATGTTTACCCTGTACTAGATGTGTTTG
GTGATCCCAGCGAAACATCATCGAACATGTCGAAGCGAGACCTTGACCGG
CGCACTGGCTACGTTGGCTTTTACGAGGCCATTAGCCTACCTTTCCTGCT
AGAATACGATGCTTCAGGTGGTTGCAGGTTTCCATGAGATAAACCTTCAC
CCTGACCCCAGAGCGCCAAAGGGGGGTTTCAGGTTTGCGTTCGAGAATGG
GCGTGCGGGGTCACCAGCAAATGAAATACAAGTATAATTTGAAAATCCTG
AAGAAAACAAATGAAACCAACTTTTCAATACTAAATCCTATATGTTTCGG
GCGCTCATGGGCCACCCACATGAACGAAAGCTCGTCGACTGCCGCGGTGC
TCCGAACCTAGGCCGGCCCATCCTGAAGAGCCGCAAGCCGCAAAATTACG
CGTATTTACGACAACGCGACGCCTGCTTGGCATAACTGATCCCCTTGTCT
TGCCGTTACCTCCCGTTGTCTCCCCTTTCCCGTGCTGTCCCATCCCCGCT
TTATATTTCCTCGGGTGTCGCACTCACGGTGACCTTCAGCATCGTCTTTC
TCCGCGAGGGAGCCAAGGGGTGGCCCGCGCGACAGCCACGATGTCGCACG
GTGAGATAATTCTCCGGTCCAATCACAGCACGCAGAGCCGCCACCGCCGC
TGTTGCAAGTCCTAATAAGTAGCGAGAGGGACCACGCATGACACCTACGT
GTGCAACTGCGCGTTCAATGGACCAAGTATTTCAAGCTTTGACCGCGCAT
TCCGTTTTCCGCCGCCGCACCCGCCCTCCCAATTTTTCATACACCCAGGC
GATGCACCCGTTTCCCGCCGATCCCTCCTGGAGGGGGTTTCCACGACGTT
GGCGGGGTCCATGGCATTTCTCGCGGTGCAGCCCCCTCCGGCCGAGGCGA
AAATAGAGCGCATCAAGGGCGGGGGTCCTATGGTGACGCTTGAAGACGGC
GCGCAGTACCAGGAGATGACGCTCGGGGACGGAGCGACCCCCAAGGACGG
CGATCGGGTCGCCGTACACTACTCGCTGTTTTACAACGGTAGGCGCGTTA
TCATACGGGCGGTGTTGTGGGTTGATAAACAAATAGGAAGCTTCATGTGT
CGTGTACGGTAGGTCGCGCGCGTCGTTTATATATGATGGGTTTTTGTCTC
TGCGACGACAGTCATCCCTCTCATCTGAGCGCCAGCCGGGCGCATTTCCC
CACAATTCCCACGCAGCATGTTAAATACTCGTGTCCATGTACATGCAAAC
ATGGCTGAGTCATGTTGTCTGGCACCCGCACCCCCGTCTCTCGCGCCCCC
TCAGGCCTCGAAGTCGAAAGCTCGCGGGATAGCCAGGGCCTGGCGGCTCG
CCCGTTGGGGTACACGTGCGGAACGATCAGCGGCCCTGGGAGCGTCCCTG
CCGGGCTTGACGAATGCGTCAAGGGGATGCGAGTGGTGAGAGTGGTCGCT
GTCGTCTCTGGTCGAAATATGGCGTCGGATATATCCATGGAATACTCTCG
CTGTTTGTTTGGGTGGGGTAACGTGTGAAAGGCGGCGGCCTTGTCCGGTT
TTTGCTCCTCTCTTGTGGTGAGAGGCAGCCAGCGGCTGGCCGTGACTCGT
TTGATTCGCCGTGGGAGATTGCATAGCTGCCACCAGGCAGCATGACGCAG
CACGTGCGGTTTGCCGTCCGAATGCGACGGTTTAGTCTTCCACGGAGATT
TACGGAGGCCTTCCTTATGTTTTAGTCTTCCGATAGGTTGATAACAATTT
AGTGGAATGCCGAACCGGCAATCAAGACACATCAAACTCGATAATAGTGT
AGACCACGCTCAGAACGTCGGGTGTCTTTTGCCCTGCCCCTGCCGCTCGG
GCGGGAAGTTCGGCAGTACACTCCGGTGAATCTTGAGTGTCCTAACCACC
ACGTAAAGAAAGGTGAAAAGGTGCCCGCTGTTTTTTCAATTCGCCAAACA
TTTTTTCTTCAAAGCAAATGAGCACAGCGGGCACCATCCGCACCCTCCCA
AAGTGCTAAATAACCCGCCAAACGCTTCTGACGCTTAACGCATTTGTTTT
GCAGGGTGGGCGTCGCAAGATGATTCTGCCTCCGAACCTCGCTTTTGGGA
AGGACGGAAGACCGCCGTTCATCCCCGGGGATGCAACTGTCCAGTAAGTC
TGTTGTCTCACCTCGGCCGAAGAGTTGCCGTTGACGTGTCGTGTAACAAT
CGTAAGCGTTAGTCCAGGAGTTTGCGAGTGGCAGTCGGTTCAAGTTGTAA
TTTGTTTTTGCCTTTTGCGAGGGTTGTTTCTGTGTACGATGTTTCGATCT
TGACAAACGGCATCAACCATTACGCAAACCTAGATACGGCATACCATCCG
GTGGTAGGCTAGGCGGCGGTCGGACTACTAATAGCTCTTTTCGACTCAGC
CTTTTCGAGAGAGCAAGAAGTAGGTCCTCAACACAAACTTTTACCAAGAA
AACATGGACATGCCAAAGCGTTTTCCTTGGCAGAGATGCAAAGCAGTTGT
CAGGCTCCTCCAAGCGTATGCAATTTGGCGGCGAACCCTTCAGCATGATC
TTGCCTTCGGTGTCGAGCGCAATCACGATCGCCGAGCACCGAGCACGGAA
GCCCAACGGTCGTCTACAAAGCCCTCGCGCCCCGCTGGACTGACAAGAGC
TGACGAGGGAAGTATGAAGACGGACAGTAGCCGCTGTGCGTCAGCTACTC
AAGGCACACTGCAGCGGTAAAAGCCGACCATCTCGCTTTGCACGTAGATA
TATATACCGCACTCACTACCGAACGGTGGATCTCGGTCGGGCTCCCCAGA
CCTTCCAGCTTTGAGCCATTCGTCGCGCTTAAGTCTCCCCTCCCCTTGTT
CCCGTTCGATGGCGACCGCGCGCTTGTGCGTCGTGGCCTCAGGTTTGACG
TTAGTCTCTGGAGCGTAAAGCCTGCCGGAACAGACCCTAATGTGACGCTT
CCAGGCTCTTCTCTCTACTGACGAGATGGCGTCGATGCGATACTTGCTGC
GGTGCTTCGGTCGTTTGCACCTCTTCCACACGGTTTGATCCTGTGGCCCG
CAAGCGATGCGGGCCAGATCGCGTGCGCTCTCTGCGAGCCTTCCCCCCGC
CCCCCTTTGATTGTCTGACATGAGGCGTGTAAGCGTCTGTTAAGAGTCTT
GGTACATACGGGGAGAATTGCCCGTAGAGCTCCATGCTGTGCGTGCTCGA
CTTGTGGTGCAGCTTGGCAGCGTGTGAGGCAGCTTTACTTTTATGATAGC
AGACTTCTGTGTCGGCATGTAGTGAGCTCTGCCTGCGAGCCCCACGCACC
GTAGTTCCATGTACAAATGTACGTAGCCTCTTCACTTGGGGCAGGGGGCA
GGGAGGAGAGAGCAGATTTATCATCCCATAAGGATAGCATCATACGTAAC
GTAAACCTCCAAAGAGCGACCTCGACAAAATTTCATCCCTTTTAAAAAAG
ATGTCCCCCAACGCTCGCATTAGGTTTGAATTTTATTCGTCTATTGTCGG
GGGGGCTTGCGAAGGCTATGAATCCCAATATTGACTTTTATGCCATTGAC
ATTTTCCTGGTCTACTGGGAGCTCGCAGAGGCTTGTTACAAGGGCGTTGC
CGGAGATAGTACCTACTGGGCGGGCCTTGTACAGGGCCGAAAAGGCTCGG
CTTTAAGATCTTGCGCAAGCAATTTTTGGCACTTTTTTAGAACGTACCGT
ACGGCCGAGGTGTCGCACAGAACAAAAAGGTCGGCGCGACTGTGCGGGGC
GTCGTAAATAGCTCGATCAGAAATATCGAATTGTCACCGTTTCGCTTCGC
TGTACCGAGGCACCCAGTATTTGGTGCCACGAAACCGCAACCTTAAGGCG
TACGCGCCCCTGGTGAAGGCAAGGGTGTCGGAATCAAGTAGTGGGTGTGT
AATCGCAGCGCGGACCCTTGGATAGTGGAACGTTGTCACGACTTGCGGGG
GTTTAGAGAGCTTGCACAAGGCTGGAGAGGGGAATGAGTGGGCTGGGCAC
TGGACGGTAGTTTTGGGCGAAGAAGTTTAGAAGGGCCTGTTTAGAATGCT
TTCGTTGTTCTTACATTAATTGCTGTCGAAATTCCAGGCGTGGTGACAAG
ATCGATGCATCAATAATGAATCGCCTAAACGGAAACAATCGCCAACAATA
CAACACTGAACAATCGTTTGCCTAAAAAATGTGTTGTGGTTAGCTCCGTG
ATTAAGCGAAACCAAAACCTTTCTCAGACCACGCAGGTCGACTGACGGGC
TCCATCGGGCCCGAGCAAAGAAAAAGTAGAAGGCTTAACACGGAGCATGA
AGTGCGCAGGTGCAGACTTCAAGGGCATCAAGGAGAAGCAGGGGGAAAAT
AAAGACACGAGTTGTGTCGCCAACACAGACAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig850:8936..15718+

>mRNA_S-dermatodea_contig850.16670.1 ID=mRNA_S-dermatodea_contig850.16670.1|Name=mRNA_S-dermatodea_contig850.16670.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at S-dermatodea_contig850:8936..15718+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGAGGATGCTGATACTGTGCGCCCTCCTTTGGACCCCCCACGTCTC
CGCGTTCGTGGTTCCCTTAGCTGCCACCGGCTCGGAACAGCAGATGACGA
GGATGCTGATACTGTGCGCCCTCCTTTGGACCCCCCACGTCTCCGCGTTC
GTGGTTCCCTTAGCTGCCACCGGCTCGGAACAGCAGCATCGTCTTTCTCC
GCGAGGGAGCCAAGGGGTGGCCCGCGCGACAGCCACGATGTCGCACGCAT
CGTCTTTCTCCGCGAGGGAGCCAAGGGGTGGCCCGCGCGACAGCCACGAT
GTCGCACGGCGATGCACCCGTTTCCCGCCGATCCCTCCTGGAGGGGGTTT
CCACGACGTTGGCGGGGTCCATGGCATTTCTCGCGGTGCAGCCCCCTCCG
GCCGAGGCGAAAATAGAGCGCATCAAGGGCGGGGGTCCTATGGTGACGCT
TGAAGACGGCGCGCAGTACCAGGAGATGACGCTCGGGGACGGAGCGACCC
CCAAGGACGGCGATCGGGTCGCCGTACACTACTCGCTGTTTTACAACGGC
GATGCACCCGTTTCCCGCCGATCCCTCCTGGAGGGGGTTTCCACGACGTT
GGCGGGGTCCATGGCATTTCTCGCGGTGCAGCCCCCTCCGGCCGAGGCGA
AAATAGAGCGCATCAAGGGCGGGGGTCCTATGGTGACGCTTGAAGACGGC
GCGCAGTACCAGGAGATGACGCTCGGGGACGGAGCGACCCCCAAGGACGG
CGATCGGGTCGCCGTACACTACTCGCTGTTTTACAACGGCCTCGAAGTCG
AAAGCTCGCGGGATAGCCAGGGCCTGGCGGCTCGCCCGTTGGGGTACACG
TGCGGAACGATCAGCGGCCCTGGGAGCGTCCCTGCCGGGCTTGACGAATG
CGTCAAGGGGATGCGAGTGGCCTCGAAGTCGAAAGCTCGCGGGATAGCCA
GGGCCTGGCGGCTCGCCCGTTGGGGTACACGTGCGGAACGATCAGCGGCC
CTGGGAGCGTCCCTGCCGGGCTTGACGAATGCGTCAAGGGGATGCGAGTG
GGTGGGCGTCGCAAGATGATTCTGCCTCCGAACCTCGCTTTTGGGAAGGA
CGGAAGACCGCCGTTCATCCCCGGGGATGCAACTGTCCAGGTGGGCGTCG
CAAGATGATTCTGCCTCCGAACCTCGCTTTTGGGAAGGACGGAAGACCGC
CGTTCATCCCCGGGGATGCAACTGTCCAGTTTGACGTTAGTCTCTGGAGC
GTAAAGCCTGCCGGAACAGACCCTAATGTGACGCTTCCAGGCTCTTCTCT
CTACTGAGTTTGACGTTAGTCTCTGGAGCGTAAAGCCTGCCGGAACAGAC
CCTAATGTGACGCTTCCAGGCTCTTCTCTCTACTGA
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