mRNA_S-dermatodea_contig85.16668.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85.16668.1
Unique NamemRNA_S-dermatodea_contig85.16668.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig85.16668.1 vs. uniprot
Match: D8LU74_ECTSI (NUDIX hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU74_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 3.320e-71
Identity = 143/258 (55.43%), Postives = 169/258 (65.50%), Query Frame = 3 
Query:    3 ENPKVVCGSVLTCKDG------LIVLGRRAIEPRRGYWGIPAGYLEMGETGEQGAAREAREELNAEIDVRGLLAVYSLPHIGQIQMVYTSVLKDAGGIDRKIA-NGGGVSAGQETDKVALFRWEDIPWDSLAFPTTSWALFHHHQR-----SKSSRGRSLAAPL-TPEGT-------DARSSSSAEIGRLEDSTQGADAKSLQHSDEG-----GRGEAES-GEI---VFSTPTAKSSLFWCPKRGLHHKDGWKRLTDS 689
            ENPKV+CGSVLT K G        VLGRR+I+PRRG+WGIPAG+LE+GETGE+GAAREAREE+NA++DV GLLAVYSLPHIGQIQM+Y+S LKD  G +  +A N    SAGQETD+V   RWEDIPWD+LAFPTTSWAL+HH  R     ++S  G S  APL T EGT       D   S+ A+    +D   G       HS+ G     G G   + G I   VFS P+  SSLFW P  GLH K+GW   TDS
Sbjct:   62 ENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANDTLADNAHSFSAGQETDEVFGVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRSIIGSSSGAPLGTGEGTRRGFSGGDTAVSAGAKAVVDDDRVVGT---RTDHSEPGVSDTMGTGVGVAFGAIAGTVFSVPSVNSSLFWRPDVGLHQKEGWNVSTDS 316
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BLAST of mRNA_S-dermatodea_contig85.16668.1 vs. uniprot
Match: A0A6H5JUS4_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS4_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 2.160e-68
Identity = 140/258 (54.26%), Postives = 167/258 (64.73%), Query Frame = 3 
Query:    3 ENPKVVCGSVLTCKDG------LIVLGRRAIEPRRGYWGIPAGYLEMGETGEQGAAREAREELNAEIDVRGLLAVYSLPHIGQIQMVYTSVLKDAGGIDRKIANGG-GVSAGQETDK---VALFRWEDIPWDSLAFPTTSWALFHHHQR-----SKSSRGRSLAAPL-TPEGT-------DARSSSSAEIGRLEDSTQGADAKSLQH--SDEGGRGEAES-GEI---VFSTPTAKSSLFWCPKRGLHHKDGWKRLTDS 689
            ENPKV+CGSVLT K G        VLGRR+I+PRRG WGIPAG+LE+GETGE+GAAREAREE+NA++DV GLLAVYSLPHIGQIQM+Y+S L+D  G +  +AN     SAGQETD+   V   RWEDIPWD+LAFPTTSWAL+HH  R     ++S+ G S  APL T EG        D   S+ A+    +D   G      +   SD  G G   + G I   VFS P+  SSLFW P  GLH K+GW   TDS
Sbjct:   12 ENPKVICGSVLTAKGGADGTDDFYVLGRRSIQPRRGLWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMMYSSELRDTQGANDILANNAHSFSAGQETDEASAVISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRSTIGSSSGAPLGTGEGRKRGFSGGDTAISAVAKAVGDDDRVVGTKTDHCEPGVSDTIGTGVGVAFGAIAGTVFSVPSVNSSLFWRPDVGLHQKEGWNASTDS 269
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BLAST of mRNA_S-dermatodea_contig85.16668.1 vs. uniprot
Match: UPI000426C731 (NUDIX domain-containing protein n=1 Tax=Niveispirillum irakense TaxID=34011 RepID=UPI000426C731)

HSP 1 Score: 158 bits (400), Expect = 3.470e-43
Identity = 80/153 (52.29%), Postives = 104/153 (67.97%), Query Frame = 3 
Query:    3 ENPKVVCGSVLTCKDGLIVLGRRAIEPRRGYWGIPAGYLEMGETGEQGAAREAREELNAEIDVRGLLAVYSLPHIGQIQMVYTSVLKDAGGIDRKIANGGGVSAGQETDKVALFRWEDIPWDSLAFPTTSWALFHHHQRSKSSRGRSLAAPLT 461
            ENPK+V GS++T   G I+L RRAIEPR+GYW +PAGY+E+ ET EQGAAREAREE  AEI + GLLA+Y++P I Q+Q++Y + L               ++AG E+ +VA+F WEDIPWD LAFP+ SW+L  H  R     G+ L AP T
Sbjct:   38 ENPKIVVGSIVTDDAGRILLCRRAIEPRKGYWTLPAGYMELSETTEQGAAREAREEACAEIAIEGLLAIYNIPRISQVQLIYRARLATPF-----------IAAGPESLEVAMFAWEDIPWDDLAFPSVSWSLHQHRDRI----GQMLGAPAT 175
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BLAST of mRNA_S-dermatodea_contig85.16668.1 vs. uniprot
Match: A0A7Y3RKT5_9PROT (NUDIX hydrolase n=1 Tax=Parvularcula mediterranea TaxID=2732508 RepID=A0A7Y3RKT5_9PROT)

HSP 1 Score: 152 bits (384), Expect = 6.820e-41
Identity = 73/138 (52.90%), Postives = 97/138 (70.29%), Query Frame = 3 
Query:    3 ENPKVVCGSVLTCKDGLIVLGRRAIEPRRGYWGIPAGYLEMGETGEQGAAREAREELNAEIDVRGLLAVYSLPHIGQIQMVYTSVLKDAGGIDRKIANGGGVSAGQETDKVALFRWEDIPWDSLAFPTTSWALFHHHQ 416
            +NPK+VCGSV T  DG I+L +RAIEPR+G+W +PAGY+E+GE+ E GA REAREE  AE+ +  +LAVYS+P IGQ+Q+++ +          ++ N  GV AG E++ V L  WEDIPW  LAFPT  WAL HH +
Sbjct:   35 QNPKIVCGSVATSPDGRILLCKRAIEPRKGFWTLPAGYMELGESVEDGARREAREEALAELKLDRILAVYSIPRIGQVQIMFRA----------ELLNPEGVGAGPESEDVKLVTWEDIPWTELAFPTVYWALRHHRE 162
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BLAST of mRNA_S-dermatodea_contig85.16668.1 vs. uniprot
Match: A7HSZ7_PARL1 (NUDIX hydrolase n=2 Tax=Parvibaculum lavamentivorans TaxID=256618 RepID=A7HSZ7_PARL1)

HSP 1 Score: 152 bits (385), Expect = 1.290e-40
Identity = 78/156 (50.00%), Postives = 106/156 (67.95%), Query Frame = 3 
Query:    6 NPKVVCGSVLTCKDGLIVLGRRAIEPRRGYWGIPAGYLEMGETGEQGAAREAREELNAEIDVRGLLAVYSLPHIGQIQMVYTSVLKDAGGIDRKIANGGGVSAGQETDKVALFRWEDIPWDSLAFPTTSWALFHHHQRSKSSRGRSLAAPLT-PEG 470
            NP++V GSV+T  DG  +L RRAIEPRRGYW +PAG++E GET ++GA REAREE NAEI +R +LA+Y++P I Q+Q++Y + L++              SAG+ET +  LF W+DIPW+ LAFP+  WAL HH +    + G+   AP T PEG
Sbjct:   60 NPRIVVGSVVT-HDGKFLLCRRAIEPRRGYWTLPAGFMEQGETTDEGARREAREEANAEIVLRDVLAIYNIPRIAQVQIMYRAELREPS-----------FSAGEETLEAGLFEWKDIPWEELAFPSVYWALMHHRE----AMGKDAIAPFTNPEG 199
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BLAST of mRNA_S-dermatodea_contig85.16668.1 vs. uniprot
Match: A0A5B8L1L6_9HYPH (NUDIX hydrolase n=1 Tax=Nitratireductor sp. SY7 TaxID=2599600 RepID=A0A5B8L1L6_9HYPH)

HSP 1 Score: 151 bits (382), Expect = 1.430e-40
Identity = 82/160 (51.25%), Postives = 104/160 (65.00%), Query Frame = 3 
Query:    3 ENPKVVCGSVLTCKDGLIVLGRRAIEPRRGYWGIPAGYLEMGETGEQGAAREAREELNAEIDVRGLLAVYSLPHIGQIQMVYTSVLKDAGGIDRKIANGGGVSAGQETDKVALFRWEDIPWDSLAFPTTSWALFHHHQRSKSSRGRSLAAPLT-PEGTDA 479
            ENPK+V GSV+   DG ++L RRAIEPRRGYW +PAG+LE+ ET E GA REA EE NA + +  LLAVYS+P + Q+Q++Y +VL + G            SAG+E+ +V LF W+DIPWD LAFPT  W L H  Q  + S    +AAP   PEG  A
Sbjct:   33 ENPKIVVGSVVR-HDGKLLLCRRAIEPRRGYWTVPAGFLELHETPEDGARREALEEANARLAIESLLAVYSVPRLSQVQLIYRAVLHEPG-----------FSAGEESLEVGLFGWDDIPWDDLAFPTVHWMLGHERQVQEGS----IAAPFANPEGRSA 176
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BLAST of mRNA_S-dermatodea_contig85.16668.1 vs. uniprot
Match: UPI000DF1FA97 (NUDIX hydrolase n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI000DF1FA97)

HSP 1 Score: 151 bits (382), Expect = 1.430e-40
Identity = 79/154 (51.30%), Postives = 102/154 (66.23%), Query Frame = 3 
Query:    3 ENPKVVCGSVLTCKDGLIVLGRRAIEPRRGYWGIPAGYLEMGETGEQGAAREAREELNAEIDVRGLLAVYSLPHIGQIQMVYTSVLKDAGGIDRKIANGGGVSAGQETDKVALFRWEDIPWDSLAFPTTSWALFHHHQRSKSSRGRSLAAPLTP 464
            ENPK++ GSV+T  DG I++ RRAIEPRRG+W +PAGY+E+GE+ E+GAAREA EE  A+I +  LLAVYSLP I Q+Q++Y + L               V+AG E+ +VALF WE+IPW SLAFP+ +WAL  H  R   S      AP  P
Sbjct:   35 ENPKIIVGSVVTDADGRILMCRRAIEPRRGFWTLPAGYMELGESCEEGAAREAWEEARAQIAIDALLAVYSLPRIDQVQLIYRARLTAPT-----------VAAGPESLEVALFAWEEIPWSSLAFPSVAWALNDHRARLGQSAFAPAVAPPEP 177
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BLAST of mRNA_S-dermatodea_contig85.16668.1 vs. uniprot
Match: A0A2D8G551_9PROT (NUDIX hydrolase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G551_9PROT)

HSP 1 Score: 149 bits (377), Expect = 7.750e-40
Identity = 71/138 (51.45%), Postives = 100/138 (72.46%), Query Frame = 3 
Query:    3 ENPKVVCGSVLTCKDGLIVLGRRAIEPRRGYWGIPAGYLEMGETGEQGAAREAREELNAEIDVRGLLAVYSLPHIGQIQMVYTSVLKDAGGIDRKIANGGGVSAGQETDKVALFRWEDIPWDSLAFPTTSWALFHHHQ 416
            ENPK+V G+V T  +G ++L RRAIEPRRG+W IPAGY+E+ ET E GAAREA+EE  A+ID+ GL+ VY++P I Q+Q++Y +VL+           GG  +AG ET+++ LF W+ IPW+ LAFP+ +W+L H H+
Sbjct:   35 ENPKIVVGAVCTW-EGKLLLCRRAIEPRRGFWTIPAGYMELNETAEAGAAREAKEEACADIDIDGLIGVYTIPRISQVQLIYRAVLR-----------GGYFAAGDETEELDLFDWDKIPWEDLAFPSVNWSLCHWHE 160
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BLAST of mRNA_S-dermatodea_contig85.16668.1 vs. uniprot
Match: A0A4P6UXA2_9HYPH (NUDIX domain-containing protein n=2 Tax=Roseitalea porphyridii TaxID=1852022 RepID=A0A4P6UXA2_9HYPH)

HSP 1 Score: 149 bits (376), Expect = 9.080e-40
Identity = 77/140 (55.00%), Postives = 97/140 (69.29%), Query Frame = 3 
Query:    3 ENPKVVCGSVLTCKDGLIVLGRRAIEPRRGYWGIPAGYLEMGETGEQGAAREAREELNAEIDVRGLLAVYSLPHIGQIQMVYTSVLKDAGGIDRKIANGGGVSAGQETDKVALFRWEDIPWDSLAFPTTSWALFHHHQRS 422
            ENPK+V GSV+T   G ++L RRAIEPRRGYW +PAGYLE+GET E+GAAREAREE NA + + GLL+VY++  + Q+Q++Y + L D           G  SAG+ET +  LF W DIPWD LAFPT  W L   HQR+
Sbjct:   33 ENPKIVVGSVVT-HAGKVLLCRRAIEPRRGYWTVPAGYLELGETPEEGAAREAREEANASLTLHGLLSVYTVRRLSQVQLIYRASLTD-----------GLFSAGEETLEAVLFDWRDIPWDDLAFPTVHWML--QHQRA 158
[Close]
BLAST of mRNA_S-dermatodea_contig85.16668.1 vs. uniprot
Match: A0A239FCX1_9PROT (ADP-ribose pyrophosphatase YjhB, NUDIX family n=2 Tax=Azospirillaceae TaxID=2829815 RepID=A0A239FCX1_9PROT)

HSP 1 Score: 146 bits (369), Expect = 1.230e-38
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 3 
Query:    3 ENPKVVCGSVLTCKDGLIVLGRRAIEPRRGYWGIPAGYLEMGETGEQGAAREAREELNAEIDVRGLLAVYSLPHIGQIQMVYTSVLKDAGGIDRKIANGGGVSAGQETDKVALFRWEDIPWDSLAFPTTSWALFHHHQR 419
            ENPK+V G+V+T   G I+L RRAIEPRRGYW +PAGY+E+GET EQGAAREA EE  A I +  LLAVY++P I Q+Q++Y + L D             ++AG E+ +VA+F W DIPW  LAFP+  WAL  +  R
Sbjct:   37 ENPKIVVGAVVTDAAGRILLCRRAIEPRRGYWTLPAGYMELGETTEQGAAREAFEEAGARIAIDALLAVYNIPRISQVQLIYRATLADPA-----------IAAGPESLEVAMFDWADIPWHDLAFPSVPWALEQYRAR 164
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85.16668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU74_ECTSI3.320e-7155.43NUDIX hydrolase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JUS4_9PHAE2.160e-6854.26Nudix hydrolase domain-containing protein n=1 Tax=... [more]
UPI000426C7313.470e-4352.29NUDIX domain-containing protein n=1 Tax=Niveispiri... [more]
A0A7Y3RKT5_9PROT6.820e-4152.90NUDIX hydrolase n=1 Tax=Parvularcula mediterranea ... [more]
A7HSZ7_PARL11.290e-4050.00NUDIX hydrolase n=2 Tax=Parvibaculum lavamentivora... [more]
A0A5B8L1L6_9HYPH1.430e-4051.25NUDIX hydrolase n=1 Tax=Nitratireductor sp. SY7 Ta... [more]
UPI000DF1FA971.430e-4051.30NUDIX hydrolase n=1 Tax=Oleisolibacter albus TaxID... [more]
A0A2D8G551_9PROT7.750e-4051.45NUDIX hydrolase n=1 Tax=Alphaproteobacteria bacter... [more]
A0A4P6UXA2_9HYPH9.080e-4055.00NUDIX domain-containing protein n=2 Tax=Roseitalea... [more]
A0A239FCX1_9PROT1.230e-3852.52ADP-ribose pyrophosphatase YjhB, NUDIX family n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85contigS-dermatodea_contig85:36364..39883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue1.6e-41
Seed eggNOG ortholog2880.D8LU74
KEGG rclassRC00002
KEGG koko:K18453
KEGG ReactionR00160,R01054
KEGG Pathwayko00230,ko00740,ko01100,map00230,map00740,map01100
GOsGO:0000041,GO:0003674,GO:0003824,GO:0004551,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008152,GO:0008324,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009624,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0015075,GO:0015318,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0022857,GO:0022890,GO:0030001,GO:0032879,GO:0034220,GO:0034641,GO:0042221,GO:0042592,GO:0042726,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046873,GO:0046915,GO:0047884,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0061088,GO:0065007,GO:0065008,GO:0070838,GO:0071577,GO:0071704,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901360,GO:1901564
EggNOG free text desc.NAD diphosphatase activity
EggNOG OGsCOG2816@1,KOG3084@2759
EC3.6.1.13,3.6.1.18
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-16_000490.1
Exons4
Model size1234
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85.16668.1prot_S-dermatodea_contig85.16668.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85 36906..39093 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.5114357-UTR-S-dermatodea_contig85:36363..369051622925347.5114357-UTR-S-dermatodea_contig85:36363..36905Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85 36364..36905 -
1694079872.1870768-UTR-S-dermatodea_contig85:36363..369051694079872.1870768-UTR-S-dermatodea_contig85:36363..36905Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85 36364..36905 -
1622925347.554354-UTR-S-dermatodea_contig85:39093..391041622925347.554354-UTR-S-dermatodea_contig85:39093..39104Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85 39094..39104 -
1694079872.2328188-UTR-S-dermatodea_contig85:39093..391041694079872.2328188-UTR-S-dermatodea_contig85:39093..39104Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85 39094..39104 -
1622925347.5636482-UTR-S-dermatodea_contig85:39772..398831622925347.5636482-UTR-S-dermatodea_contig85:39772..39883Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85 39773..39883 -
1694079872.2434173-UTR-S-dermatodea_contig85:39772..398831694079872.2434173-UTR-S-dermatodea_contig85:39772..39883Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85 39773..39883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.5232234-CDS-S-dermatodea_contig85:36905..372651622925347.5232234-CDS-S-dermatodea_contig85:36905..37265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85 36906..37265 -
1694079872.2009284-CDS-S-dermatodea_contig85:36905..372651694079872.2009284-CDS-S-dermatodea_contig85:36905..37265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85 36906..37265 -
1622925347.5332496-CDS-S-dermatodea_contig85:38076..381731622925347.5332496-CDS-S-dermatodea_contig85:38076..38173Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85 38077..38173 -
1694079872.2104738-CDS-S-dermatodea_contig85:38076..381731694079872.2104738-CDS-S-dermatodea_contig85:38076..38173Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85 38077..38173 -
1622925347.54484-CDS-S-dermatodea_contig85:38980..390931622925347.54484-CDS-S-dermatodea_contig85:38980..39093Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85 38981..39093 -
1694079872.222995-CDS-S-dermatodea_contig85:38980..390931694079872.222995-CDS-S-dermatodea_contig85:38980..39093Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85 38981..39093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85.16668.1

>prot_S-dermatodea_contig85.16668.1 ID=prot_S-dermatodea_contig85.16668.1|Name=mRNA_S-dermatodea_contig85.16668.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=190bp
MGETGEQGAAREAREELNAEIDVRGLLAVYSLPHIGQIQMVYTSVLKDAG
GIDRKIANGGGVSAGQETDKVALFRWEDIPWDSLAFPTTSWALFHHHQRS
KSSRGRSLAAPLTPEGTDARSSSSAEIGRLEDSTQGADAKSLQHSDEGGR
GEAESGEIVFSTPTAKSSLFWCPKRGLHHKDGWKRLTDS*
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mRNA from alignment at S-dermatodea_contig85:36364..39883-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85.16668.1 ID=mRNA_S-dermatodea_contig85.16668.1|Name=mRNA_S-dermatodea_contig85.16668.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3520bp|location=Sequence derived from alignment at S-dermatodea_contig85:36364..39883- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGAACCCCAAGGTCGTGTGCGGCTCTGTGCTGACGTGCAAAGACGGC
CTCATTGTGCTCGGCCGCCGGGCCATAGAGCCAAGGCGAGGCTATTGGGG
GATACCCGCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAA
AAATATTTTAATATTATATTATTTTGGACGTCATTTCTCTTGTCTGATCG
ACCGTGGCAGATGCACACCGGCTTCCATGGGGGTCGACTGTAGCTGCCAC
GTGCATGTCCCTGTTAACAACCACGGCGCGCTGCAACTGTTACGTTTCAG
ATCCACCTTTGGTATTCGTCAAGCAACGTAGCTGCCTTTTTTTTACGGGT
GAGGAAGACTTGTTGTGCGGTAAGCCGCGGGGGTAATGCCCTGATATAGA
AAGGTTCGCTAGAATAATGCAACTAACCACGGTAGTAATCAGCCCTCTGC
AAAGTGGAGTGCAAAGTGTCCTTGTGAACGGCATAGCGGACGCCAACGTG
GCGGTCGAAGCGATATCTCTGAGGTTCCAACGGATGCAGATTTCTCGTCG
ACACAAGAAGAGGTCATCGCCGGCGCTAGTCCTGCGAATGTCGCGGAGTC
ACCTCGCTTTCCTGTCAGATGAAAACTCGTATGCCATGCGTGCTACTGAA
CGTAAGAGTTAGATTGGCTCTGTTCTCGCCGCATTCAATGTTTGTAAGCG
CTCAACGCCGCACGCCTGCTTGCCCTTCTGATGCCCAACATTTTATCGTG
CCGATTGGCCACCGCTGTACGCTCGCAAGGCTATCTAGAGATGGGAGAGA
CCGGAGAGCAAGGGGCGGCGAGAGAGGCCAGGGAGGAGCTGAATGCCGAG
ATCGATGTCCGAGGTCTTCTGGCCGTCTACTCCTTGCCTCACATCGGGCA
GATGTGAGAGGGTGGATGGCTTGTTTGTCGTATTTGGAGAAGGGCGGCCG
CACTGCAGTCCGCATGCTCGGGCATGTGCATTACCGACCCTGATGTTGCG
TGACCATACTTGTAGCAGTTTCGCACGCCCTGGTCGGGTCGCATGATCGA
TCCATATTTTCGCCCCCCCCTCGCCGTGGGTTACGGCCGACCACTATTGT
ACCCAACACACTATCGCTCGTTCGCCGTACACTTAGCAGCGGATGGTGTA
TAGCTGAAATCCATTTTCCTCCAGTTGCGTGCGCTTCGCGTGTTTTGTGC
AGCACTCAGCCGCAGGATCTTGGGCATGGCGCTGATCCAGCGAACTTGCG
AATTTAGCGCTTATGTATATATGCCTTATTCCCCCCACAGCGTTCGCCGT
GCTGCACGCCTAAGCTGCAATTGCGTCGCTAGAGTGTTGCAGTACCTCTC
TGGCACCGGAACGTACACTCCAAACGCCGCATCCCCAGCACTCGTGTACC
GTATGACTTCAATTTTCTACGAAGACAATGACCAGATTTATGGAGCTCCG
TGTATATCATCAACCGAGCCAGACATGTTGGCTAAAACAAAAACAAAAAA
AAGTTGTGGGTATATTTCACGCGTCGAAATTCGCCAAGAGGCGTGTAAGA
TATGCCCAAGTGAAGCAACACGCGCGCCACGCGCTCACCAATCTTGGCGA
AGAAGGGCGACACGACCACACGAACAGAAAACCTAGACTTCCCTCTTCCC
CCCCCCCCCCCTCCCCCCGCCGCCCCCGTTGATGCCCTGTTGTGGCGCGA
TCCGCCAAAGCCAGATGGTGTACACCTCTGTGCTAAAAGATGCTGGAGGA
ATTGATAGGAAAATTGCTAACGGCGGTGGCGTGTCGGCGGGCCAAGAAAC
GGACAAGGCGAGTGCAGCATATTGAAGCGTTCCGCAGTCCGCAGACGGAG
TGTCTGGTTTTGGATTGGCGTCCCGGTTCGCGAAGGCCTCCGAAATGCCG
GGGTGGCTCGTTGTGCATTATTTGCCGTCTTTGAATATAACCACCACTTA
CGACGAAGGCGTGAGTTGAGTGCGTCTCGCCCGGTACCTGTGTGTACAAG
TACGCATGATGGGTGTGATTTTTTGTGTGTTTCCCGGCGTGTTGGAGCGT
GTCTGTTGCTAGTATGGTACCCACCTGCAGATACTTTAAAAATATTTTGG
AACATAAAAGAGCGCCGGGGAATCCGCGTTTTGTTTGAACAAGGTAACCA
TGTAGCACCCCCCCCTCCCGAAAGAACAAAACGATTTGAAGAACATAGAG
CGAACACTGGAGTCCCACGTTTTCAAGAGGGAAGATGCCCCTCCCCCACC
CCCGTCCCCCACCTCAAGGCGGTAGCGATCCTGGGGGATAAAAATTGGCC
CGATAGGTCAAGAATTGCTGTTGAGAGGGAATAAAGCCTTTTTTGCGCAA
CCTCTGCCAAAGTAGCAAGCAACGAATTTAATAGTCATCGTTGGTTGATC
CTGTGGAAACAGCGCTCCGTCCTCCCAACGACGCGTGATCGATGGCCTAA
CAGCTAAGTTTCAAAACCTGAGCGGGCACCCCCCCCTCCCCGCCCCCCCT
TGCCGTGTAATTCACCGCGCCACATGACACGCGAAAATTGTGATTCTTCC
CCTTTGCCCCTCGTCTTGTCTGACTGTCTCACGACTGCGCGTGATTTCTT
ACGACTCCTCGCCCCCAGGTGGCCCTGTTTCGATGGGAGGACATCCCTTG
GGATAGCTTGGCGTTTCCCACCACGTCGTGGGCGCTGTTTCACCACCACC
AGCGATCAAAATCTTCAAGAGGCCGGTCTCTGGCAGCACCGTTAACGCCC
GAAGGCACCGACGCCAGGAGTAGCAGCAGCGCAGAGATAGGACGCCTCGA
AGATTCGACACAGGGTGCAGATGCTAAGTCACTGCAGCACAGCGATGAAG
GCGGGCGGGGGGAAGCGGAATCTGGGGAGATCGTTTTTTCTACTCCAACG
GCGAAAAGCTCGCTCTTTTGGTGTCCTAAGAGGGGGCTTCACCACAAGGA
CGGCTGGAAGCGCTTGACTGACTCCTGACTCAGGGCTTCGTTTTGGTGGA
GGGCATGCCCATATATACCGCGGCACCTCTCTGCGGGTGTACATTCATGG
TGGATTTCCGCAGTTCCTTGGGTTGGAGTAGGGGGTGGGAGGCGGCCTCT
CGCTATACCGTAACGCATGCTCTGATTTTCGAGGAGCCAGTGTTTGGCTG
CAATAGAGTCAGCGATAAATTCGAGTGTTGTGTTGTTGCGGTTCATGATC
AAGTTGCCAGTGGGTGGGGGTGCATAAATGCCATAGAAATATCTGCATAG
GAAAATGTGACTCACGAGTGCGCTCAGAATCACCGTGGGTGCTTCAAGCA
TTTCATACGTAGGCTAGGCTGCACAACACGATGGAGCCCGGCCCGCCCAC
CTTTCCACTGACTTGTGTGTGGCGTCAGTGTTGTTGTCGTATTTCGCTTC
CAACAAGCCTCATTGTTGGACCACCTACAGCTGGCACTCTCCTACTTAGT
GGCACGAAGCTAAAAGAGCCGGTGGACATATAGTGCCAAAGGCTTTTCCG
CCAAATATAACCACAGAGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig85:36364..39883-

>mRNA_S-dermatodea_contig85.16668.1 ID=mRNA_S-dermatodea_contig85.16668.1|Name=mRNA_S-dermatodea_contig85.16668.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at S-dermatodea_contig85:36364..39883- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGAGAGACCGGAGAGCAAGGGGCGGCGAGAGAGGCCAGGGAGGAGCT
GAATGCCGAGATCGATGTCCGAGGTCTTCTGGCCGTCTACTCCTTGCCTC
ACATCGGGCAGATATGGGAGAGACCGGAGAGCAAGGGGCGGCGAGAGAGG
CCAGGGAGGAGCTGAATGCCGAGATCGATGTCCGAGGTCTTCTGGCCGTC
TACTCCTTGCCTCACATCGGGCAGATCCAGATGGTGTACACCTCTGTGCT
AAAAGATGCTGGAGGAATTGATAGGAAAATTGCTAACGGCGGTGGCGTGT
CGGCGGGCCAAGAAACGGACAAGCCAGATGGTGTACACCTCTGTGCTAAA
AGATGCTGGAGGAATTGATAGGAAAATTGCTAACGGCGGTGGCGTGTCGG
CGGGCCAAGAAACGGACAAGGTGGCCCTGTTTCGATGGGAGGACATCCCT
TGGGATAGCTTGGCGTTTCCCACCACGTCGTGGGCGCTGTTTCACCACCA
CCAGCGATCAAAATCTTCAAGAGGCCGGTCTCTGGCAGCACCGTTAACGC
CCGAAGGCACCGACGCCAGGAGTAGCAGCAGCGCAGAGATAGGACGCCTC
GAAGATTCGACACAGGGTGCAGATGCTAAGTCACTGCAGCACAGCGATGA
AGGCGGGCGGGGGGAAGCGGAATCTGGGGAGATCGTTTTTTCTACTCCAA
CGGCGAAAAGCTCGCTCTTTTGGTGTCCTAAGAGGGGGCTTCACCACAAG
GACGGCTGGAAGCGCTTGACTGACTCCTGAGTGGCCCTGTTTCGATGGGA
GGACATCCCTTGGGATAGCTTGGCGTTTCCCACCACGTCGTGGGCGCTGT
TTCACCACCACCAGCGATCAAAATCTTCAAGAGGCCGGTCTCTGGCAGCA
CCGTTAACGCCCGAAGGCACCGACGCCAGGAGTAGCAGCAGCGCAGAGAT
AGGACGCCTCGAAGATTCGACACAGGGTGCAGATGCTAAGTCACTGCAGC
ACAGCGATGAAGGCGGGCGGGGGGAAGCGGAATCTGGGGAGATCGTTTTT
TCTACTCCAACGGCGAAAAGCTCGCTCTTTTGGTGTCCTAAGAGGGGGCT
TCACCACAAGGACGGCTGGAAGCGCTTGACTGACTCCTGA
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