mRNA_S-dermatodea_contig8499.16666.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8499.16666.1
Unique NamemRNA_S-dermatodea_contig8499.16666.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8499.16666.1 vs. uniprot
Match: D8LKH1_ECTSI (Uracil-DNA glycosylase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH1_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 7.370e-111
Identity = 159/199 (79.90%), Postives = 174/199 (87.44%), Query Frame = 1 
Query:    1 VGMNPGPWGMVQTGVPFGEVGYVRDWLGVRGEVGRPSKEHAKRPVDGFACQRSEVSGKRLWGFFNKRFGTADAWGDNMFVYNYCPLTFMSSSGGNITPDKLPPTERERIEDACGEALAAMMLALRPSVVIGVGNFAGSKCLQAVKVSGIGTEDDEVAVEVVVVNHPSPASPTGIKWEKATCMDELVLGSSASKEIDRFL 597
            VGMNPGPWGMVQTGVPFGEVG+VRDWL V+G VGRPSKEH KRPV GF CQRSEVSG RLWGFF +RFGTADAWGD MFVYN+CPLTFMSSSGGNITPDKL P ERE I++ACGEALA M+ AL+PSVV+ VGNFAGSKC +AVK SG+     +  VEVVVVNHPSPASPTG+KWEKATC++ELVL SS SKEIDRFL
Sbjct:  119 VGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHTKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAG-KGEVEVVVVNHPSPASPTGVKWEKATCLNELVLNSSKSKEIDRFL 316
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BLAST of mRNA_S-dermatodea_contig8499.16666.1 vs. uniprot
Match: UPI0019034DE8 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter pohnpeiensis TaxID=454153 RepID=UPI0019034DE8)

HSP 1 Score: 199 bits (505), Expect = 2.650e-59
Identity = 97/189 (51.32%), Postives = 127/189 (67.20%), Query Frame = 1 
Query:    1 VGMNPGPWGMVQTGVPFGEVGYVRDWLGVRGEVGRPSKEHAKRPVDGFACQRSEVSGKRLWGFFNKRFGTADAWGDNMFVYNYCPLTFMSSSGGNITPDKLPPTERERIEDACGEALAAMMLALRPSVVIGVGNFAGSKCLQAVKVSGIGTEDDEVAVEVVVVNHPSPASPTGIK-WEKATCMDELVLG 564
            +GMNPGP+GM QTGVPFGE+  V+DW+G++GEVG+P+ EH KRP++GFACQRSEVSG+RLWG F  RFGTADA+ ++ FV NYCPL +MS++G N+TPDK+       +E AC   LA+ +LAL+P  +IGVG FA  +   A +  G      +V        HPSPASP   + W +A     L  G
Sbjct:   58 LGMNPGPFGMAQTGVPFGEIAAVKDWMGIQGEVGKPAHEHPKRPIEGFACQRSEVSGRRLWGLFQDRFGTADAFFEDHFVTNYCPLVWMSATGANLTPDKIAAASMVEVEGACLRHLASTILALQPEFLIGVGAFAEQRIRTAAETVGSKASIGKVL-------HPSPASPAANRGWAEAATKQLLAQG 239
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BLAST of mRNA_S-dermatodea_contig8499.16666.1 vs. uniprot
Match: A0A4Q2X1G7_9BACT (Single-stranded DNA-binding protein (Fragment) n=2 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2X1G7_9BACT)

HSP 1 Score: 197 bits (502), Expect = 2.850e-59
Identity = 96/180 (53.33%), Postives = 126/180 (70.00%), Query Frame = 1 
Query:    1 VGMNPGPWGMVQTGVPFGEVGYVRDWLGVRGEVGRPSKEHAKRPVDGFACQRSEVSGKRLWGFFNKRFGTADAWGDNMFVYNYCPLTFMSSSGGNITPDKLPPTERERIEDACGEALAAMMLALRPSVVIGVGNFAGSKCLQAVKVSGIGTEDDEVAVEVVVVNHPSPASPTGIK-WEKA 537
            +GMNPGP+GM QTGVPFGEV  VRDW+G+   +G+P  EH KRP++GFACQRSEVSG+RLWG F++RFGTADA+  + FV NYCPL +MSS+G N+TPDKL  +E   +E+AC + L  ++  L+PS +IGVG FA  +  +A + SG   +   V        HPSPASP   + W +A
Sbjct:   25 LGMNPGPFGMAQTGVPFGEVAAVRDWMGIEAPIGKPDHEHPKRPIEGFACQRSEVSGRRLWGLFSERFGTADAFFKDHFVLNYCPLVWMSSTGANLTPDKLSVSEMAPVEEACQKHLQEVIALLKPSWLIGVGGFAEERLRRAAETSGSKAKIGRVL-------HPSPASPAANRGWAEA 197
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BLAST of mRNA_S-dermatodea_contig8499.16666.1 vs. uniprot
Match: A0A2E1VWN6_9BACT (Single-stranded DNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1VWN6_9BACT)

HSP 1 Score: 197 bits (502), Expect = 7.710e-59
Identity = 93/171 (54.39%), Postives = 120/171 (70.18%), Query Frame = 1 
Query:    1 VGMNPGPWGMVQTGVPFGEVGYVRDWLGVRGEVGRPSKEHAKRPVDGFACQRSEVSGKRLWGFFNKRFGTADAWGDNMFVYNYCPLTFMSSSGGNITPDKLPPTERERIEDACGEALAAMMLALRPSVVIGVGNFAGSKCLQAVKVSGIGTEDDEVAVEVVVVNHPSPASP 513
            +GMNPGPWGM QTGVPFGEV  VRDWLG+RGEVG+P+ EH KRPV+G AC RSEVSG+RLWG+  +RFG+ + +    FV+NYCPL F+  SG N TPDKLP +ER+ +E  C  AL  ++  LRP  VIG+G +A  +  +A+         D + +E+  + HPSPASP
Sbjct:   60 LGMNPGPWGMAQTGVPFGEVAAVRDWLGLRGEVGKPNPEHPKRPVEGLACTRSEVSGRRLWGWAEERFGSPERFFATFFVHNYCPLAFLEESGRNRTPDKLPASERQALETPCDRALREVVELLRPKRVIGIGKYAEKQARRAL---------DGMTIEIGTILHPSPASP 221
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BLAST of mRNA_S-dermatodea_contig8499.16666.1 vs. uniprot
Match: A0A5C6AGS2_9BACT (Uracil DNA glycosylase superfamily protein n=1 Tax=Botrimarina colliarenosi TaxID=2528001 RepID=A0A5C6AGS2_9BACT)

HSP 1 Score: 197 bits (500), Expect = 1.320e-58
Identity = 100/180 (55.56%), Postives = 123/180 (68.33%), Query Frame = 1 
Query:    1 VGMNPGPWGMVQTGVPFGEVGYVRDWLGVRGEVGRPSKEHAKRPVDGFACQRSEVSGKRLWGFFNKRFGTADAWGDNMFVYNYCPLTFMSSSGGNITPDKLPPTERERIEDACGEALAAMMLALRPSVVIGVGNFAGSKCLQAVKVSGIGTEDDEVAVEVVVVNHPSPASPTGIK-WEKA 537
            +GMNPGPWGM QTGVPFGEV   RDW+G+   V RP  EH KRP++GFACQRSEVSG+RLWG F +RFGTADA+    FV NYCPL FM+ +G N TPDKLP  ERE ++ AC + L+ ++   RP   +GVG +A  KCL  ++V+G G       V V  V HPSPASP   + W +A
Sbjct:   58 LGMNPGPWGMAQTGVPFGEVAAARDWIGIEAAVRRPKDEHPKRPIEGFACQRSEVSGRRLWGLFAERFGTADAFFAEHFVANYCPLVFMTETGKNHTPDKLPLDEREPLDAACDQHLSRLLDIARPEWAVGVGKYA-EKCL--LRVAGEG-------VRVTTVLHPSPASPAANRGWAEA 227
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BLAST of mRNA_S-dermatodea_contig8499.16666.1 vs. uniprot
Match: A0A2D9TGN5_9DELT (Single-stranded DNA-binding protein n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2D9TGN5_9DELT)

HSP 1 Score: 196 bits (498), Expect = 2.810e-58
Identity = 94/189 (49.74%), Postives = 126/189 (66.67%), Query Frame = 1 
Query:    1 VGMNPGPWGMVQTGVPFGEVGYVRDWLGVRGEVGRPSKEHAKRPVDGFACQRSEVSGKRLWGFFNKRFGTADAWGDNMFVYNYCPLTFMSSSGGNITPDKLPPTERERIEDACGEALAAMMLALRPSVVIGVGNFAGSKCLQAVKVSGIGTEDDEVAVEVVVVNHPSPASPTGIK-WEKATCMDELVLG 564
            +GMNPGPWGM QTGVPFGEV Y RDW+GV+G +G+P  EH KRP++GF C RSEVSG+RLWG+  +RFGTA+A+ +  +V NYCPL FM  S  N  P+KLP  ER+ + DAC EAL  ++ AL+P +V+GVG +A  +   A+          ++ V +  V HPSPASP   + W++    +   LG
Sbjct:   58 LGMNPGPWGMAQTGVPFGEVSYARDWMGVKGRIGKPEVEHPKRPIEGFECARSEVSGRRLWGWAEQRFGTAEAFFERFYVANYCPLVFMEESARNRVPEKLPVAERQPLLDACDEALVEVIEALQPELVVGVGAWARKRAEAAL---------GDLGVRIGQVLHPSPASPRANRGWQEQAEAELEALG 237
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BLAST of mRNA_S-dermatodea_contig8499.16666.1 vs. uniprot
Match: A0A4V1SDI5_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=2 Tax=Verrucomicrobiaceae TaxID=203557 RepID=A0A4V1SDI5_9BACT)

HSP 1 Score: 195 bits (496), Expect = 5.440e-58
Identity = 97/180 (53.89%), Postives = 123/180 (68.33%), Query Frame = 1 
Query:    1 VGMNPGPWGMVQTGVPFGEVGYVRDWLGVRGEVGRPSKEHAKRPVDGFACQRSEVSGKRLWGFFNKRFGTADAWGDNMFVYNYCPLTFMSSSGGNITPDKLPPTERERIEDACGEALAAMMLALRPSVVIGVGNFAGSKCLQAVKVSGIGTEDDEVAVEVVVVNHPSPASPTGIK-WEKA 537
            +GMNPGP+GM QTGVPFGEV  VRDW+G+   VG+P  EH KRP++GFACQRSEVSG+RLWG F++RFGTADA+  + FV NYCPL +MSS+G N+TPDKL   E   +E AC + L  ++  L+PS +IGVG FA  +  +A + SG       V        HPSPASP   + W +A
Sbjct:   55 LGMNPGPFGMAQTGVPFGEVAAVRDWMGIEASVGKPPHEHPKRPIEGFACQRSEVSGRRLWGLFSERFGTADAFFKDHFVLNYCPLVWMSSTGANLTPDKLSAAEMAPVEAACQKHLQEVIALLKPSWLIGVGGFAEERLRRAAESSGSKARIGRVL-------HPSPASPAANRGWAEA 227
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BLAST of mRNA_S-dermatodea_contig8499.16666.1 vs. uniprot
Match: Q39ZI0_GEOMG (Uncharacterized protein n=2 Tax=Geobacter TaxID=28231 RepID=Q39ZI0_GEOMG)

HSP 1 Score: 195 bits (495), Expect = 7.230e-58
Identity = 99/186 (53.23%), Postives = 124/186 (66.67%), Query Frame = 1 
Query:    1 VGMNPGPWGMVQTGVPFGEVGYVRDWLGVRGEVGRPSKEHAKRPVDGFACQRSEVSGKRLWGFFNKRFGTADAWGDNMFVYNYCPLTFMSSSGGNITPDKLPPTERERIEDACGEALAAMMLALRPSVVIGVGNFAGSKCLQAVKVSGIGTEDDEVAVEVVVVNHPSPASPTGIKWEKATCMDELV 558
            VGMNPGPWGM QTGVPFGEV  V +WLG+ G V RP+ EH K+ VDGFAC+RSEVSG+RLWGF  +RFGT + +    FV NYCPL F+++ GGNITPDKL   E+E +  AC  AL   ++ LRP VVIGVG FA ++C +A+         +   VEV  + HPSPASP   +    T + +L 
Sbjct:   55 VGMNPGPWGMAQTGVPFGEVAVVTEWLGINGTVTRPAGEHPKKRVDGFACRRSEVSGRRLWGFIRERFGTPERFFARFFVANYCPLLFLTAEGGNITPDKLRRGEQEPLFAACDLALRRTVVLLRPRVVIGVGAFAEARCHEAL---------EGFDVEVGRIIHPSPASPAANRDWAGTALRQLA 231
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BLAST of mRNA_S-dermatodea_contig8499.16666.1 vs. uniprot
Match: A0A3N5VL41_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A3N5VL41_9BACT)

HSP 1 Score: 195 bits (495), Expect = 8.180e-58
Identity = 99/189 (52.38%), Postives = 128/189 (67.72%), Query Frame = 1 
Query:    1 VGMNPGPWGMVQTGVPFGEVGYVRDWLGVRGEVGRPSKEHAKRPVDGFACQRSEVSGKRLWGFFNKRFGTADAWGDNMFVYNYCPLTFMSSSGGNITPDKLPPTERERIEDACGEALAAMMLALRPSVVIGVGNFAGSKCLQAVKVSGIGTEDDEVAVEVVVVNHPSPASPTGIK-WEKATCMDELVLG 564
            +GMNPGP+GM QTGVPFGEV  VRDWL +   V +P+ EH KRPV+GF C RSEVSG+RLWG F +RFGTADA+  + FV NYCPL +MS++G N+TPDKLP  E   +EDAC   LA ++  L+PS +IG+G FA  + L+A + SG      + A+  ++  HPSPASP   + W +A       LG
Sbjct:   58 LGMNPGPFGMAQTGVPFGEVAAVRDWLEIHEPVDKPAGEHPKRPVEGFNCTRSEVSGRRLWGLFAERFGTADAFFKDHFVLNYCPLVWMSATGANLTPDKLPAAEMAPVEDACLAHLAEVIGLLKPSFLIGIGGFAEQRLLRAAETSG-----SKAAIGRIL--HPSPASPAANRGWAEAASRQLAALG 239
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BLAST of mRNA_S-dermatodea_contig8499.16666.1 vs. uniprot
Match: A0A399HZ39_9DELT (Single-stranded DNA-binding protein n=1 Tax=Geobacter sp. TaxID=46610 RepID=A0A399HZ39_9DELT)

HSP 1 Score: 194 bits (494), Expect = 9.910e-58
Identity = 96/178 (53.93%), Postives = 120/178 (67.42%), Query Frame = 1 
Query:    1 VGMNPGPWGMVQTGVPFGEVGYVRDWLGVRGEVGRPSKEHAKRPVDGFACQRSEVSGKRLWGFFNKRFGTADAWGDNMFVYNYCPLTFMSSSGGNITPDKLPPTERERIEDACGEALAAMMLALRPSVVIGVGNFAGSKCLQAVKVSGIGTEDDEVAVEVVVVNHPSPASPTGIK-WE 531
            VGMNPGPWGM QTGVPFGE+  VRDWLG+ G VGRP++E+ K+ V GFAC+RSEVSG+RLWG    R+GT + + D  FV NYCPL F+ + G N+TPDKL   ER+ +  AC  AL   +  LRPS VIGVGNFA  + ++A+  SGI          V  + HPSPA+P   + WE
Sbjct:   54 VGMNPGPWGMAQTGVPFGEISAVRDWLGIDGTVGRPAEEYPKKLVTGFACRRSEVSGRRLWGLIRSRYGTPERFFDRFFVLNYCPLLFLDTDGRNLTPDKLRSAERDTLNAACDRALRRQVELLRPSCVIGVGNFAADQVVRALAGSGI---------RVGRILHPSPANPAANRGWE 222
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8499.16666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKH1_ECTSI7.370e-11179.90Uracil-DNA glycosylase superfamily protein n=2 Tax... [more]
UPI0019034DE82.650e-5951.32single-stranded DNA-binding protein n=1 Tax=Luteol... [more]
A0A4Q2X1G7_9BACT2.850e-5953.33Single-stranded DNA-binding protein (Fragment) n=2... [more]
A0A2E1VWN6_9BACT7.710e-5954.39Single-stranded DNA-binding protein n=1 Tax=Planct... [more]
A0A5C6AGS2_9BACT1.320e-5855.56Uracil DNA glycosylase superfamily protein n=1 Tax... [more]
A0A2D9TGN5_9DELT2.810e-5849.74Single-stranded DNA-binding protein n=1 Tax=Sandar... [more]
A0A4V1SDI5_9BACT5.440e-5853.89Single-strand selective monofunctional uracil-DNA ... [more]
Q39ZI0_GEOMG7.230e-5853.23Uncharacterized protein n=2 Tax=Geobacter TaxID=28... [more]
A0A3N5VL41_9BACT8.180e-5852.38Single-strand selective monofunctional uracil-DNA ... [more]
A0A399HZ39_9DELT9.910e-5853.93Single-stranded DNA-binding protein n=1 Tax=Geobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8499contigS-dermatodea_contig8499:5166..8013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.2
Seed ortholog evalue2.7e-87
Seed eggNOG ortholog2880.D8LKH1
Preferred nameSMUG1
KEGG koko:K10800
KEGG Pathwayko03410,map03410
GOsGO:0000702,GO:0000703,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004844,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006304,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0017065,GO:0018130,GO:0019104,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0031974,GO:0031981,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045008,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0055086,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0090304,GO:0097159,GO:0097506,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576
EggNOG free text desc.single-strand selective uracil DNA N-glycosylase activity
EggNOG OGs28KKK@1,2QT20@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size925
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8499.16666.1prot_S-dermatodea_contig8499.16666.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8499 5172..7691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.3383157-UTR-S-dermatodea_contig8499:5165..51711622925347.3383157-UTR-S-dermatodea_contig8499:5165..5171Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8499 5166..5171 +
1694079872.045425-UTR-S-dermatodea_contig8499:5165..51711694079872.045425-UTR-S-dermatodea_contig8499:5165..5171Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8499 5166..5171 +
1622925347.4200919-UTR-S-dermatodea_contig8499:7691..80131622925347.4200919-UTR-S-dermatodea_contig8499:7691..8013Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8499 7692..8013 +
1694079872.136825-UTR-S-dermatodea_contig8499:7691..80131694079872.136825-UTR-S-dermatodea_contig8499:7691..8013Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8499 7692..8013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.351212-CDS-S-dermatodea_contig8499:5171..51951622925347.351212-CDS-S-dermatodea_contig8499:5171..5195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8499 5172..5195 +
1694079872.0681245-CDS-S-dermatodea_contig8499:5171..51951694079872.0681245-CDS-S-dermatodea_contig8499:5171..5195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8499 5172..5195 +
1622925347.3615768-CDS-S-dermatodea_contig8499:5789..59211622925347.3615768-CDS-S-dermatodea_contig8499:5789..5921Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8499 5790..5921 +
1694079872.089067-CDS-S-dermatodea_contig8499:5789..59211694079872.089067-CDS-S-dermatodea_contig8499:5789..5921Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8499 5790..5921 +
1622925347.3724625-CDS-S-dermatodea_contig8499:6376..64401622925347.3724625-CDS-S-dermatodea_contig8499:6376..6440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8499 6377..6440 +
1694079872.0991476-CDS-S-dermatodea_contig8499:6376..64401694079872.0991476-CDS-S-dermatodea_contig8499:6376..6440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8499 6377..6440 +
1622925347.383781-CDS-S-dermatodea_contig8499:6623..66961622925347.383781-CDS-S-dermatodea_contig8499:6623..6696Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8499 6624..6696 +
1694079872.1079698-CDS-S-dermatodea_contig8499:6623..66961694079872.1079698-CDS-S-dermatodea_contig8499:6623..6696Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8499 6624..6696 +
1622925347.3972225-CDS-S-dermatodea_contig8499:6929..70561622925347.3972225-CDS-S-dermatodea_contig8499:6929..7056Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8499 6930..7056 +
1694079872.1169565-CDS-S-dermatodea_contig8499:6929..70561694079872.1169565-CDS-S-dermatodea_contig8499:6929..7056Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8499 6930..7056 +
1622925347.4071653-CDS-S-dermatodea_contig8499:7514..76911622925347.4071653-CDS-S-dermatodea_contig8499:7514..7691Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8499 7515..7691 +
1694079872.128485-CDS-S-dermatodea_contig8499:7514..76911694079872.128485-CDS-S-dermatodea_contig8499:7514..7691Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8499 7515..7691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8499.16666.1

>prot_S-dermatodea_contig8499.16666.1 ID=prot_S-dermatodea_contig8499.16666.1|Name=mRNA_S-dermatodea_contig8499.16666.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=199bp
MNPGPWGMVQTGVPFGEVGYVRDWLGVRGEVGRPSKEHAKRPVDGFACQR
SEVSGKRLWGFFNKRFGTADAWGDNMFVYNYCPLTFMSSSGGNITPDKLP
PTERERIEDACGEALAAMMLALRPSVVIGVGNFAGSKCLQAVKVSGIGTE
DDEVAVEVVVVNHPSPASPTGIKWEKATCMDELVLGSSASKEIDRFLA*
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mRNA from alignment at S-dermatodea_contig8499:5166..8013+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8499.16666.1 ID=mRNA_S-dermatodea_contig8499.16666.1|Name=mRNA_S-dermatodea_contig8499.16666.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2848bp|location=Sequence derived from alignment at S-dermatodea_contig8499:5166..8013+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGGAATGAACCCAGGCCCGTGGGGAATGGCAAGTAGGCGGCCAGACGA
TGGGGGTTGCGAGCCTGACTGGGAGTGCTCGCGATTTCCAGCCACGAGCG
AGTTTCGTTATCGACCTCGAGGGAGATGTAACTAGTGCAAGGTCTTAATA
CTGCAAGTTCCATTGTAGTGGGGACCCACGGCAACAGTAGTAGTGTACGT
ATTGTTGCCCGTCGTGCAAACCACGTAACGCCCGTACGACGCACGGCGGA
CGAGGGAAAGCGAGTAGTCCACAAGTTCTGCGGTCGGCTCGTGCGCAAAG
TTAGCGAGTAGGAAACTTTTCGTGAGTACTACGGCACCGTAACGTGGCCA
TTATTGCCCGCCGCGAGAAAACGTCCGATTTGCCGTTTTTCGTTGCGGGT
CGGGACACAGTTTGCTTTAGAGATATTTGCGAGCGCGCGTGGCGAAGAGG
AGATTTTCAAGTGTGTATTTTAACACGCTTCAAGCTGTAGGAGTTCGGGG
CAGATCTGATGGTGAACCTCTCCCCTGCCCTCTCGTCCTATCCGCCCTTT
TTGTTGTGGCGTCCGCTCATTCCCTTGCCTCTCTTCCACGCCATTTGATC
AATTGCATTCCAATCGCCGCGCAGGTTCAAACCGGGGTCCCTTTCGGGGA
GGTGGGGTACGTCCGAGATTGGTTGGGGGTACGAGGGGAAGTAGGACGTC
CTAGCAAAGAGCATGCCAAGAGGCCGGTGGATGGGTTCGCGTGCCAAAGG
AGCGAGGTGATTTCTCCGATATCCGTTCGTCTTGCAAGGCGTGTGCGTAC
GAGTGTAGAAATCTGCCTATCGCACGTGCTGGTTGCACGCTGGTACCTTG
ATGCCGAAGGTGTTTGAGCCGGAATGGTATTGTGTGAGCGCTTACCGAGC
AGTGTCTTGCGACCCTGTGAAATCCGATGTAGTATACGTCTGTTCTGTCT
CTGTTATGATGTCGGTCGTCGCGAGTGATTGTACTTCGCACACAACTCAG
GGAATAGCGAAGCTCAGCCTGCATGCGCACTACGTACATTTGTGCACGAC
AAATTGAGCCGTCTCCCTCCTACAGCGCCGGGAGTGGCGTATGAGCATTA
GCGACCATTTCGATAACGATATTTGTTTTCCGGGTGATGTACTTCATTTT
TTGTGGCCTCATTGAGAGCATGAGCGCATTGTGTACGTCATGCCTGTCGC
CTCTCTTCAAGGTCAGCGGGAAGCGTTTGTGGGGATTCTTCAACAAGAGA
TTCGGAACTGCGGACGCTTGGGGAGGTGGGTAGCAGTACTCTACCGCTAG
CGAGCACGGCGATTCCCGGAAGCAGCCGATCTTGTTGGAGTATGTGGTTC
ATCCTTCGTGCAACCCGTAGCATTCTTTCGGGTTGCCTAAACACGAGTTC
CCGCTGCTTCCCCGCCGTCCCCCCGCGAACATTGTTTTCCCTTTTGATCG
GATTGCAGACAATATGTTCGTGTACAACTACTGCCCGTTGACCTTCATGA
GCTCGTCTGGAGGCAACATCACCCCCGATAAGTAAGGAGCGGGCTTGTGA
TTTTGTGGTCGCCTCATGCGAGAAACGGCGTTTGGTAACCTGCACCACCC
CATCGTGCCCGTGACGATCTCTTTCATGCCCATGGTGCTTGGGTCGCCTT
CCTTATCCGCGTACGTAACAAGCGTACCCTTAATAGGCACACCGTGAACC
CTCATCGGAAAGGGTCCATAAGCCTTGTTGCTGCTTTCGGGTGCTTTTCG
TTGCACACGAAAAGGTTGCCTCCCACGGAGCGTGAGAGGATTGAGGACGC
TTGCGGCGAGGCCTTGGCAGCTATGATGTTGGCGCTGCGACCTTCCGTTG
TCATTGGCGTGGGGAACTTTGCAGGATCCAAATGCCTCCAGGTGACAAAT
CGGTAGGCGTCCCATGATTATCAGAGCTGCGGAAGCCTGTGACATCCTTG
CTGCGGTTCATTTGATTGGCATGGCGACACGAAGCGCAGTTTAGTACCGT
GTAAGCGTGCACTGCAGCCCATGCCGGGCTGCTGCGATTGGTACTGTGAT
ATGTACTGGTTCACCTGCCCCTGTATAAGTTGTGTAGACTCTGCTTTTCG
AGGGCGGGAGAGGGCAGAGATTAGGAGAACGACTGTTTACCACGTTTTAC
CGTGGATGGCACAACTTTACAACGAAAGTCAATTCTAGAACAGGTTTATA
GCACTATTCATTTTATAGTAGACCGGCCGGGAAGACCTATACGACATGGT
AGCGTTGGTCATTTGGCGTTCGAATACTCAGGTCAACCTCGGCATCACCC
ATCGTCATTTCTCGCCCCTCTAATGATCGTCTGTGGTTTTACGGTGCAGG
CAGTGAAGGTGTCGGGGATAGGGACTGAAGATGACGAGGTCGCGGTGGAG
GTCGTCGTGGTGAACCACCCAAGTCCGGCAAGCCCTACAGGGATCAAGTG
GGAGAAGGCTACGTGCATGGACGAGCTGGTTCTCGGCAGCAGCGCGAGCA
AGGAGATTGACCGGTTCCTGGCTTGACGGAAGTGACGCACCCGCAGTAAC
ATTCACTTTTATGAACGTGCAAGTTGCATGACCACGCTTGCTTACGTTGT
ACTGTACATAGCCATGCTTGCGCTCGTGTACTGAGCACGGCCAAGCGCAA
CCACGGGGTATCTTGGCGGAAGTATTGTATAGTGTTGCCGTAGAAATATG
TTATGCCGCCCGTACTTTCAAAGGTGGTTGGCATACGCTGTCATAGTTTA
ATTTGCCCATGAGCACACACCTGATTATACGTCAATGGCTGTGACTACAC
CGCATGCGCATGGACTTTCGAGACCGACCAATGCTGTGGCTTTTCCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8499:5166..8013+

>mRNA_S-dermatodea_contig8499.16666.1 ID=mRNA_S-dermatodea_contig8499.16666.1|Name=mRNA_S-dermatodea_contig8499.16666.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at S-dermatodea_contig8499:5166..8013+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACCCAGGCCCGTGGGGAATGATGAACCCAGGCCCGTGGGGAATGGT
TCAAACCGGGGTCCCTTTCGGGGAGGTGGGGTACGTCCGAGATTGGTTGG
GGGTACGAGGGGAAGTAGGACGTCCTAGCAAAGAGCATGCCAAGAGGCCG
GTGGATGGGTTCGCGTGCCAAAGGAGCGAGGTTCAAACCGGGGTCCCTTT
CGGGGAGGTGGGGTACGTCCGAGATTGGTTGGGGGTACGAGGGGAAGTAG
GACGTCCTAGCAAAGAGCATGCCAAGAGGCCGGTGGATGGGTTCGCGTGC
CAAAGGAGCGAGGTCAGCGGGAAGCGTTTGTGGGGATTCTTCAACAAGAG
ATTCGGAACTGCGGACGCTTGGGGAGGTCAGCGGGAAGCGTTTGTGGGGA
TTCTTCAACAAGAGATTCGGAACTGCGGACGCTTGGGGAGACAATATGTT
CGTGTACAACTACTGCCCGTTGACCTTCATGAGCTCGTCTGGAGGCAACA
TCACCCCCGATAAACAATATGTTCGTGTACAACTACTGCCCGTTGACCTT
CATGAGCTCGTCTGGAGGCAACATCACCCCCGATAAGTTGCCTCCCACGG
AGCGTGAGAGGATTGAGGACGCTTGCGGCGAGGCCTTGGCAGCTATGATG
TTGGCGCTGCGACCTTCCGTTGTCATTGGCGTGGGGAACTTTGCAGGATC
CAAATGCCTCCAGGTTGCCTCCCACGGAGCGTGAGAGGATTGAGGACGCT
TGCGGCGAGGCCTTGGCAGCTATGATGTTGGCGCTGCGACCTTCCGTTGT
CATTGGCGTGGGGAACTTTGCAGGATCCAAATGCCTCCAGGCAGTGAAGG
TGTCGGGGATAGGGACTGAAGATGACGAGGTCGCGGTGGAGGTCGTCGTG
GTGAACCACCCAAGTCCGGCAAGCCCTACAGGGATCAAGTGGGAGAAGGC
TACGTGCATGGACGAGCTGGTTCTCGGCAGCAGCGCGAGCAAGGAGATTG
ACCGGTTCCTGGCTTGAGCAGTGAAGGTGTCGGGGATAGGGACTGAAGAT
GACGAGGTCGCGGTGGAGGTCGTCGTGGTGAACCACCCAAGTCCGGCAAG
CCCTACAGGGATCAAGTGGGAGAAGGCTACGTGCATGGACGAGCTGGTTC
TCGGCAGCAGCGCGAGCAAGGAGATTGACCGGTTCCTGGCTTGA
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