mRNA_S-dermatodea_contig8499.16665.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8499.16665.1 vs. uniprot
Match: D8LKH1_ECTSI (Uracil-DNA glycosylase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH1_ECTSI) HSP 1 Score: 130 bits (328), Expect = 1.510e-32 Identity = 62/87 (71.26%), Postives = 69/87 (79.31%), Query Frame = 2
Query: 557 GAQNIKGAGSPLEPVVNADDLVGISRRLHDRLKDKAWRGTSKQPVTCSYNVLEYASEPNEAYTREYGGGRALGRAFVVGMNPGPWGM 817
G+ + GS L V D+LV ISRRLHD LKD+ W+GTSKQPV+CSYNVLEYASE NEAYT+ YGGGR GRAFVVGMNPGPWGM
Sbjct: 44 GSAGAEAGGSTL--VSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGM 128
BLAST of mRNA_S-dermatodea_contig8499.16665.1 vs. uniprot
Match: A0A2E5UFJ2_9BACT (Single-stranded DNA-binding protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E5UFJ2_9BACT) HSP 1 Score: 65.1 bits (157), Expect = 8.450e-9 Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 2
Query: 617 LVGISRRLHDRLKDKAWRGTSKQPVTCSYNVLEYASEPNEAYTREYGGGRALGRAFVVGMNPGPWGMA 820
L+ I+++L + ++ PVTC YN L+YA +P+EA+ ++YG G GR ++GMNPGPWGMA
Sbjct: 5 LIEITKQLAANVNQLSFA----DPVTCVYNPLDYAWKPHEAFLKKYGDGE--GRVLLIGMNPGPWGMA 66
BLAST of mRNA_S-dermatodea_contig8499.16665.1 vs. uniprot
Match: A0A3N5QI00_9GAMM (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5QI00_9GAMM) HSP 1 Score: 59.7 bits (143), Expect = 6.190e-7 Identity = 31/68 (45.59%), Postives = 39/68 (57.35%), Query Frame = 2
Query: 617 LVGISRRLHDRLKDKAWRGTSKQPVTCSYNVLEYASEPNEAYTREYGGGRALGRAFVVGMNPGPWGMA 820
LV +SR L +R+ + PV C YN LEYA P+E Y YGGG ++GMNPGP+GMA
Sbjct: 3 LVDVSRALSERVASLRFA----DPVCCVYNPLEYARAPHELYLSRYGGGPK--EVLLLGMNPGPFGMA 64
BLAST of mRNA_S-dermatodea_contig8499.16665.1 vs. uniprot
Match: A0A257SX93_9GAMM (Single-stranded DNA-binding protein n=1 Tax=Chromatiales bacterium 21-64-14 TaxID=1970504 RepID=A0A257SX93_9GAMM) HSP 1 Score: 59.3 bits (142), Expect = 8.500e-7 Identity = 32/69 (46.38%), Postives = 39/69 (56.52%), Query Frame = 2
Query: 614 DLVGISRRLHDRLKDKAWRGTSKQPVTCSYNVLEYASEPNEAYTREYGGGRALGRAFVVGMNPGPWGMA 820
DLV ++RRL + + PVT YN LEYA P++ Y R YG G +VGMNPGPWGMA
Sbjct: 2 DLVIVARRLGTEVAKLRFAA----PVTHVYNPLEYAWRPHQEYLRRYGSGSR--EVVLVGMNPGPWGMA 64
BLAST of mRNA_S-dermatodea_contig8499.16665.1 vs. uniprot
Match: A0A831RGC5_9GAMM (Single-stranded DNA-binding protein (Fragment) n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A831RGC5_9GAMM) HSP 1 Score: 57.0 bits (136), Expect = 3.930e-6 Identity = 32/69 (46.38%), Postives = 37/69 (53.62%), Query Frame = 2
Query: 614 DLVGISRRLHDRLKDKAWRGTSKQPVTCSYNVLEYASEPNEAYTREYGGGRALGRAFVVGMNPGPWGMA 820
DLV +RRL + + PVT YN LEYA P+ Y R YG G +VGMNPGPWGMA
Sbjct: 2 DLVTTARRLGAEVAGLRFAA----PVTHVYNPLEYAWAPHRDYLRRYGAGTR--EVILVGMNPGPWGMA 64
BLAST of mRNA_S-dermatodea_contig8499.16665.1 vs. uniprot
Match: A0A257M482_9BACT (Single-stranded DNA-binding protein n=1 Tax=Verrucomicrobiales bacterium VVV1 TaxID=2015575 RepID=A0A257M482_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 5.490e-6 Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 2
Query: 602 VNADDLVGISRRLHDRLKDKAWRGTSKQPVTCSYNVLEYASEPNEAYTREYGGGRALGRAFVVGMNPGPWGMA 820
++A L+ +SR+L L + PV+ +YN L+YA P+E + + +GGG+ R F++GMNPGP+GMA
Sbjct: 1 MSAAALIDLSRKLSRDLDGFRFSA----PVSHTYNPLDYARAPHELFLKRFGGGKK--RVFLLGMNPGPFGMA 67
BLAST of mRNA_S-dermatodea_contig8499.16665.1 vs. uniprot
Match: A0A3M1FEK9_9DELT (Single-stranded DNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1FEK9_9DELT) HSP 1 Score: 57.0 bits (136), Expect = 5.490e-6 Identity = 32/70 (45.71%), Postives = 39/70 (55.71%), Query Frame = 2
Query: 611 DDLVGISRRLHDRLKDKAWRGTSKQPVTCSYNVLEYASEPNEAYTREYGGGRALGRAFVVGMNPGPWGMA 820
DD + ISR L + + G PV+ Y L YA E +EAY R YG R R ++GMNPGPWGMA
Sbjct: 3 DDPITISRWLAKATANLTFSG----PVSLVYRPLHYAWEAHEAYLRRYGAERPR-RVVLLGMNPGPWGMA 67
BLAST of mRNA_S-dermatodea_contig8499.16665.1 vs. uniprot
Match: A0A2D6YPE2_9BACT (Single-stranded DNA-binding protein n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A2D6YPE2_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 6.300e-6 Identity = 29/69 (42.03%), Postives = 37/69 (53.62%), Query Frame = 2
Query: 614 DLVGISRRLHDRLKDKAWRGTSKQPVTCSYNVLEYASEPNEAYTREYGGGRALGRAFVVGMNPGPWGMA 820
D+ + + RL R PV YN L+YA P++AY R Y R RA ++GMNPGPWGMA
Sbjct: 13 DVADAAEAISSRLSKDVGRLRFGDPVDVVYNPLDYAWAPHQAYVRRYA--RRGIRALLLGMNPGPWGMA 79
BLAST of mRNA_S-dermatodea_contig8499.16665.1 vs. uniprot
Match: A0A4Q5XBI8_9DELT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q5XBI8_9DELT) HSP 1 Score: 56.6 bits (135), Expect = 7.720e-6 Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 2
Query: 617 LVGISRRLHDRLKDKAWRGTSKQPVTCSYNVLEYASEPNEAYTREYGGGRALGRAFVVGMNPGPWGMA 820
LV ISR L ++ + PV+ YN L YA EP+E Y ++GGG+ RA ++GMNPGP+GMA
Sbjct: 3 LVRISRELAKQVDGLQFSA----PVSYVYNPLVYAREPHERYLTQWGGGKK--RALLLGMNPGPFGMA 64
BLAST of mRNA_S-dermatodea_contig8499.16665.1 vs. uniprot
Match: A0A2D7H2U5_9BACT (Single-stranded DNA-binding protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D7H2U5_9BACT) HSP 1 Score: 56.6 bits (135), Expect = 7.720e-6 Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 2
Query: 617 LVGISRRLHDRLKDKAWRGTSKQPVTCSYNVLEYASEPNEAYTREYGGGRALGRAFVVGMNPGPWGMA 820
L+ I+R L + ++ +PV YN L+YA + + ++ ++YGGG+ GR ++GMNPGPWGMA
Sbjct: 5 LITITRELSKGVDTLSF----SEPVAFVYNPLKYAWKSHRSFLQKYGGGK--GRVLLIGMNPGPWGMA 66 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8499.16665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8499.16665.1 >prot_S-dermatodea_contig8499.16665.1 ID=prot_S-dermatodea_contig8499.16665.1|Name=mRNA_S-dermatodea_contig8499.16665.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=192bp MASDLSLGLPNARRAEGSAAACNVQESPAGRVSLHFCLSSGAVELKYIAAback to top mRNA from alignment at S-dermatodea_contig8499:3134..5198+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8499.16665.1 ID=mRNA_S-dermatodea_contig8499.16665.1|Name=mRNA_S-dermatodea_contig8499.16665.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2065bp|location=Sequence derived from alignment at S-dermatodea_contig8499:3134..5198+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8499:3134..5198+ >mRNA_S-dermatodea_contig8499.16665.1 ID=mRNA_S-dermatodea_contig8499.16665.1|Name=mRNA_S-dermatodea_contig8499.16665.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at S-dermatodea_contig8499:3134..5198+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |