mRNA_S-dermatodea_contig8494.16663.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8494.16663.1
Unique NamemRNA_S-dermatodea_contig8494.16663.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8494.16663.1 vs. uniprot
Match: D8LFG9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG9_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 2.110e-63
Identity = 108/125 (86.40%), Postives = 119/125 (95.20%), Query Frame = 1 
Query:    1 QLERQELQAALLLYMKSLARVIPTVVAHQFKGMGKLVD--SDQVEEEIVAVVDELMHEVTADIPRAVDQIFEELGVDETGCISEDEWEGAWQDFPELLDMMSLRGLGKTAHWAAIVLDQVVANQQ 369
            QL+RQELQAALLLYMKSLARVIPTVVAH+ + MG+L+D  S+QV+EEIV+VVDELMHEVTA+IPRAV+QIFEELGV E GCISEDEWEGAWQ+FPELLDMMSLRGLGKTAHWAAIVLDQVVANQQ
Sbjct:  233 QLDRQELQAALLLYMKSLARVIPTVVAHELEDMGRLIDIDSEQVQEEIVSVVDELMHEVTAEIPRAVEQIFEELGVIEAGCISEDEWEGAWQNFPELLDMMSLRGLGKTAHWAAIVLDQVVANQQ 357
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BLAST of mRNA_S-dermatodea_contig8494.16663.1 vs. uniprot
Match: A0A6H5KIH8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIH8_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 1.330e-61
Identity = 107/125 (85.60%), Postives = 119/125 (95.20%), Query Frame = 1 
Query:    1 QLERQELQAALLLYMKSLARVIPTVVAHQFKGMGKLVD--SDQVEEEIVAVVDELMHEVTADIPRAVDQIFEELGVDETGCISEDEWEGAWQDFPELLDMMSLRGLGKTAHWAAIVLDQVVANQQ 369
            QL+RQELQAALLLYMKSLARVIPTVVAH+ + MG+L+D  S+QV+EEIV+VVDELMHEVTA+IPRAV+QIFEELGV E GCISEDEWEGAWQ+FPELLDMMSLRGLGKTAHWAAIVLD+VVANQQ
Sbjct:  360 QLDRQELQAALLLYMKSLARVIPTVVAHELEDMGRLIDIDSEQVQEEIVSVVDELMHEVTAEIPRAVEQIFEELGVIEAGCISEDEWEGAWQNFPELLDMMSLRGLGKTAHWAAIVLDEVVANQQ 484
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8494.16663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFG9_ECTSI2.110e-6386.40EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KIH8_9PHAE1.330e-6185.60EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8494contigS-dermatodea_contig8494:5438..7314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.7
Seed ortholog evalue1.7e-45
Seed eggNOG ortholog2880.D8LFG9
Preferred namecoq10
KEGG koko:K18588
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006091,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0015980,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901576,GO:1901661,GO:1901663
EggNOG free text desc.ubiquinone binding
EggNOG OGsCOG2867@1,KOG3177@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-04_002220.1
Exons2
Model size463
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8494.16663.1prot_S-dermatodea_contig8494.16663.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8494 5466..7272 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.1189523-UTR-S-dermatodea_contig8494:5437..54651622925347.1189523-UTR-S-dermatodea_contig8494:5437..5465Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8494 5438..5465 -
1694079871.8917098-UTR-S-dermatodea_contig8494:5437..54651694079871.8917098-UTR-S-dermatodea_contig8494:5437..5465Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8494 5438..5465 -
1622925347.1563964-UTR-S-dermatodea_contig8494:7272..73141622925347.1563964-UTR-S-dermatodea_contig8494:7272..7314Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8494 7273..7314 -
1694079871.9278133-UTR-S-dermatodea_contig8494:7272..73141694079871.9278133-UTR-S-dermatodea_contig8494:7272..7314Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8494 7273..7314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.1337159-CDS-S-dermatodea_contig8494:5465..57441622925347.1337159-CDS-S-dermatodea_contig8494:5465..5744Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8494 5466..5744 -
1694079871.9055355-CDS-S-dermatodea_contig8494:5465..57441694079871.9055355-CDS-S-dermatodea_contig8494:5465..5744Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8494 5466..5744 -
1622925347.1459582-CDS-S-dermatodea_contig8494:7158..72721622925347.1459582-CDS-S-dermatodea_contig8494:7158..7272Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8494 7159..7272 -
1694079871.917834-CDS-S-dermatodea_contig8494:7158..72721694079871.917834-CDS-S-dermatodea_contig8494:7158..7272Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8494 7159..7272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8494.16663.1

>prot_S-dermatodea_contig8494.16663.1 ID=prot_S-dermatodea_contig8494.16663.1|Name=mRNA_S-dermatodea_contig8494.16663.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=131bp
MKSLARVIPTVVAHQFKGMGKLVDSDQVEEEIVAVVDELMHEVTADIPRA
VDQIFEELGVDETGCISEDEWEGAWQDFPELLDMMSLRGLGKTAHWAAIV
LDQVVANQQEGAGGGDQSSASPGAGGDGVP*
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mRNA from alignment at S-dermatodea_contig8494:5438..7314-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8494.16663.1 ID=mRNA_S-dermatodea_contig8494.16663.1|Name=mRNA_S-dermatodea_contig8494.16663.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1877bp|location=Sequence derived from alignment at S-dermatodea_contig8494:5438..7314- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTCGAGCGGCAGGAGCTACAGGCTGCCCTCCTCTTGTACATGAAGAG
CTTGGCGAGAGTCATCCCTACCGTCGTCGCCCACCAGTTCAAGGGCATGG
GGAAGCTCGTGGACAGCGACCAGGTCGAGGAGGAGATCGTAGCGGTCGTC
GACGAGGTAGGGCAGATGCTGCCACCTATGCGCCCGTGCGGTAACGGGTG
CCGACACGGCTGTTTCCGTCCTTGCGGTGATACGGCGGTGACAATGTGGG
CTTAGGTAGTGGTGCGATGATGTTGGTGGCGGCTTCGCATCGATGGAATC
GAGTCGCCACCGGTCTAGCCGAGGCCGCGGAGACAGCAGACGTATGATGT
GTATGCCATGTTTTTTGCGAGAAGCTGACGCCGAGCTTCGGTTGCGACGT
TTTGGCGACGCACGAGACGAGCAGGCCGCGTGCGTTTGGCCGCGTGGAAT
GCGTGAGTGCTATGTATGTGTGCTGTAAGTGTTGGTTCCGAAACTTTGAT
GTGTAATAACGCGACGCGGGGTGTAAAATCGCGCGCCTCGAAGGCCCACC
GGAGGCCGCGAGAAAATCGTTCCGTTTGGCTGGCTGGTTGTCGAGCGACT
GAATCACCTGAAACGGACTTGCTGTGTCGTTCCTGAAGAAGACGCACTGA
AGCATCATTGGGTAATCTTTGACCCCGCAACCCGCTGGGGTCATACGCCT
CTCTTCCTGCGATCCCGCCTCAATTGCGCTTCATCCTACTCTCTTTCGCA
TGGAGGCGTTTTTGTGGCTCGCGAAGTTAGCCCTACTGTGTCCATCCATT
AAACAGCTGTCACAAGCAACTATTCTAACCTACCCCCCCCCATAGAGCGA
GCGTTGGGGCCCCACCTTTTCAAGAGGGAAGATGATCCAAGCTTCGTACA
CCTATGGAGGCTGACGTTGCGTACGATGCTAGGGATTTTCATGTTATATA
TTGTTACGGTATTATACACGTGTCTTTTTTCCTGAGCGACATCCTGGTAT
TGTATCTTTGGTGTGCTTTGTGAGCCAAGAAGATCGATTTGTCTTCACCC
ACCCCCCCCCCCTCCCATTGAAGGCTGTGATAGAGAGAGACATTATTTGA
AGCATGGGACAACCAGACGAAGCGGTAGCTATACTGGTGGATAAAGAAGT
GGCCTGAGAAGGGGAAAAAATGATGCAGAAAGGATAAGTCAAAACACCTT
CGCGCCGCCTTTGGCAAGAGTAGAAAGGAACGATTGGCCGTCGGCGATAT
ATCGATATTGTGGGAACAATTTTCCGTCCTCTCGAGGACAGACGCGTGGT
CAATTGTCTAGCAGCTAAGGCATGCACAACATGAGTACGCCCCCCCCCCC
CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCNNNNNNNNNNTGTGGAAAAAAGTTTCCCCCCCCCCAAGAGAAACCA
CGCGTCAAATTACTACCCAACCAGCCAAACACACACCCACACCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCTGCACACACGCCACTGCCTCCCCCTCTC
CTGAAACCCCATCCACCCAGCTGATGCACGAGGTTACGGCGGACATTCCG
CGTGCGGTGGATCAAATTTTCGAGGAGCTTGGCGTCGACGAGACCGGTTG
TATCTCAGAGGACGAGTGGGAGGGCGCATGGCAAGACTTTCCAGAGCTTC
TTGACATGATGAGCCTGCGCGGCTTGGGGAAGACGGCGCACTGGGCCGCG
ATAGTTCTTGATCAGGTCGTTGCAAATCAGCAAGAGGGGGCTGGGGGAGG
GGATCAGTCTTCCGCGTCCCCCGGAGCCGGTGGCGACGGAGTTCCATGAA
AGGGTGGGACGGACACCAATTTTTGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8494:5438..7314-

>mRNA_S-dermatodea_contig8494.16663.1 ID=mRNA_S-dermatodea_contig8494.16663.1|Name=mRNA_S-dermatodea_contig8494.16663.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at S-dermatodea_contig8494:5438..7314- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGAGCTTGGCGAGAGTCATCCCTACCGTCGTCGCCCACCAGTTCAA
GGGCATGGGGAAGCTCGTGGACAGCGACCAGGTCGAGGAGGAGATCGTAG
CGGTCGTCGACGAGATGAAGAGCTTGGCGAGAGTCATCCCTACCGTCGTC
GCCCACCAGTTCAAGGGCATGGGGAAGCTCGTGGACAGCGACCAGGTCGA
GGAGGAGATCGTAGCGGTCGTCGACGAGCTGATGCACGAGGTTACGGCGG
ACATTCCGCGTGCGGTGGATCAAATTTTCGAGGAGCTTGGCGTCGACGAG
ACCGGTTGTATCTCAGAGGACGAGTGGGAGGGCGCATGGCAAGACTTTCC
AGAGCTTCTTGACATGATGAGCCTGCGCGGCTTGGGGAAGACGGCGCACT
GGGCCGCGATAGTTCTTGATCAGGTCGTTGCAAATCAGCAAGAGGGGGCT
GGGGGAGGGGATCAGTCTTCCGCGTCCCCCGGAGCCGGTGGCGACGGAGT
TCCATGACTGATGCACGAGGTTACGGCGGACATTCCGCGTGCGGTGGATC
AAATTTTCGAGGAGCTTGGCGTCGACGAGACCGGTTGTATCTCAGAGGAC
GAGTGGGAGGGCGCATGGCAAGACTTTCCAGAGCTTCTTGACATGATGAG
CCTGCGCGGCTTGGGGAAGACGGCGCACTGGGCCGCGATAGTTCTTGATC
AGGTCGTTGCAAATCAGCAAGAGGGGGCTGGGGGAGGGGATCAGTCTTCC
GCGTCCCCCGGAGCCGGTGGCGACGGAGTTCCATGA
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