mRNA_S-dermatodea_contig8494.16662.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8494.16662.1
Unique NamemRNA_S-dermatodea_contig8494.16662.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8494.16662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8494contigS-dermatodea_contig8494:4666..5402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size738
Cds size519
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.068751-CDS-S-dermatodea_contig8494:4665..51841622925347.068751-CDS-S-dermatodea_contig8494:4665..5184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8494 4666..5184 +
1694079871.8616912-CDS-S-dermatodea_contig8494:4665..51841694079871.8616912-CDS-S-dermatodea_contig8494:4665..5184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8494 4666..5184 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.080339-UTR-S-dermatodea_contig8494:5184..54021622925347.080339-UTR-S-dermatodea_contig8494:5184..5402Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8494 5185..5402 +
1694079871.875748-UTR-S-dermatodea_contig8494:5184..54021694079871.875748-UTR-S-dermatodea_contig8494:5184..5402Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8494 5185..5402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8494.16662.1prot_S-dermatodea_contig8494.16662.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8494 4666..5184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8494.16662.1

>prot_S-dermatodea_contig8494.16662.1 ID=prot_S-dermatodea_contig8494.16662.1|Name=mRNA_S-dermatodea_contig8494.16662.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=173bp
RLTPSRPLSSPNTKKGNQLQSNKRCNLFLVKCCTPVCAILLDVTLLLLAA
IKEASVLLERNDLLLYCPACSYRLGQLETKESSVLERNAYNTTYCTARHA
TQRGRSHWTPPKGAKISECDTLRYTRYRRVAIRRNSQKKHTHTQLTTTGD
QNVSQTITEVNPTLSSSTNAST*
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mRNA from alignment at S-dermatodea_contig8494:4666..5402+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8494.16662.1 ID=mRNA_S-dermatodea_contig8494.16662.1|Name=mRNA_S-dermatodea_contig8494.16662.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=737bp|location=Sequence derived from alignment at S-dermatodea_contig8494:4666..5402+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACTCACTCCCTCCCGCCCCCTTTCCTCACCAAACACAAAGAAAGGCAA
CCAACTTCAGTCTAATAAAAGGTGTAACTTGTTTTTGGTCAAATGTTGTA
CTCCTGTCTGTGCGATTCTGCTGGATGTCACGCTACTGCTACTGGCAGCT
ATAAAGGAGGCTTCCGTCCTCCTTGAACGAAATGACTTGCTATTATACTG
CCCTGCATGCAGCTACCGATTAGGACAGCTGGAGACAAAGGAGTCTTCCG
TCCTTGAACGAAATGCCTATAATACTACTTACTGCACTGCCCGGCATGCA
ACACAGAGGGGTAGGTCCCACTGGACCCCACCCAAAGGCGCTAAAATAAG
CGAGTGTGATACACTTCGATATACTCGATACCGCAGAGTAGCCATTCGAC
GGAATTCGCAAAAAAAACACACACACACACAACTCACCACCACGGGAGAT
CAAAATGTATCCCAAACAATTACTGAAGTCAACCCCACTCTGTCGAGCAG
TACAAATGCAAGTACGTAAAACCTTGGCTCTTCTAACGCGTCAAGAGGTC
GCGGCAAGTAACGATACACGCGGAGCACTAGCCCCGCCAAATCTCTCCCC
CCGCCTCCAATAGGAATATTATTATTGCTCCACCCTTGGCAGAGTAGGAA
GGAACGATTGGCCATCGGCGATAGATCGATCCTGTGGGAACAATGCTCCG
TCCTCTCGAGGACAGACGCGTGGTCAATGGTCTAAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8494:4666..5402+

>mRNA_S-dermatodea_contig8494.16662.1 ID=mRNA_S-dermatodea_contig8494.16662.1|Name=mRNA_S-dermatodea_contig8494.16662.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at S-dermatodea_contig8494:4666..5402+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACTCACTCCCTCCCGCCCCCTTTCCTCACCAAACACAAAGAAAGGCAA
CCAACTTCAGTCTAATAAAAGGTGTAACTTGTTTTTGGTCAAATGTTGTA
CTCCTGTCTGTGCGATTCTGCTGGATGTCACGCTACTGCTACTGGCAGCT
ATAAAGGAGGCTTCCGTCCTCCTTGAACGAAATGACTTGCTATTATACTG
CCCTGCATGCAGCTACCGATTAGGACAGCTGGAGACAAAGGAGTCTTCCG
TCCTTGAACGAAATGCCTATAATACTACTTACTGCACTGCCCGGCATGCA
ACACAGAGGGGTAGGTCCCACTGGACCCCACCCAAAGGCGCTAAAATAAG
CGAGTGTGATACACTTCGATATACTCGATACCGCAGAGTAGCCATTCGAC
GGAATTCGCAAAAAAAACACACACACACACAACTCACCACCACGGGAGAT
CAAAATGTATCCCAAACAATTACTGAAGTCAACCCCACTCTGTCGAGCAG
TACAAATGCAAGTACGTAACGACTCACTCCCTCCCGCCCCCTTTCCTCAC
CAAACACAAAGAAAGGCAACCAACTTCAGTCTAATAAAAGGTGTAACTTG
TTTTTGGTCAAATGTTGTACTCCTGTCTGTGCGATTCTGCTGGATGTCAC
GCTACTGCTACTGGCAGCTATAAAGGAGGCTTCCGTCCTCCTTGAACGAA
ATGACTTGCTATTATACTGCCCTGCATGCAGCTACCGATTAGGACAGCTG
GAGACAAAGGAGTCTTCCGTCCTTGAACGAAATGCCTATAATACTACTTA
CTGCACTGCCCGGCATGCAACACAGAGGGGTAGGTCCCACTGGACCCCAC
CCAAAGGCGCTAAAATAAGCGAGTGTGATACACTTCGATATACTCGATAC
CGCAGAGTAGCCATTCGACGGAATTCGCAAAAAAAACACACACACACACA
ACTCACCACCACGGGAGATCAAAATGTATCCCAAACAATTACTGAAGTCA
ACCCCACTCTGTCGAGCAGTACAAATGCAAGTACGTAA
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