mRNA_S-dermatodea_contig84923.16661.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84923.16661.1
Unique NamemRNA_S-dermatodea_contig84923.16661.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig84923.16661.1 vs. uniprot
Match: D8LKP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKP3_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.850e-24
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 IRCRHLSPNGRRISMFRAAFHTGYVPCGVLRLTKQQLDGACADDRFHQ 144
            +RCRH+SP GRR+SMFRAAFHTGYVPCGVLRLTKQQLDGACADDRFHQ
Sbjct:  396 VRCRHVSPTGRRVSMFRAAFHTGYVPCGVLRLTKQQLDGACADDRFHQ 443
[Close]
BLAST of mRNA_S-dermatodea_contig84923.16661.1 vs. uniprot
Match: A0A7S2C0A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C0A3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.650e-18
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 IRCRHLSPNGRRISMFRAAFHTGYVPCGVLRLTKQQLDGACADDRF 138
            +RCRHL+  G R+SMFRAAFHTGYVPCGVLR  K QLDGAC D RF
Sbjct:    9 LRCRHLTAKGSRVSMFRAAFHTGYVPCGVLRFNKAQLDGACGDSRF 54
[Close]
BLAST of mRNA_S-dermatodea_contig84923.16661.1 vs. uniprot
Match: A0A1V9Y3Y7_9STRA (Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y3Y7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.980e-18
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 IRCRHLSPNGRRISMFRAAFHTGYVPCGVLRLTKQQLDGACADDRF 138
            IRCRHL+ +G+RISMFRAAFHTGY+P G+LRLTK QLDGAC D RF
Sbjct:  128 IRCRHLTDSGQRISMFRAAFHTGYIPMGILRLTKAQLDGACQDPRF 173
[Close]
BLAST of mRNA_S-dermatodea_contig84923.16661.1 vs. uniprot
Match: A0A485L0S5_9STRA (Aste57867_14201 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0S5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.460e-17
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 IRCRHLSPNGRRISMFRAAFHTGYVPCGVLRLTKQQLDGACADDRF 138
            IRCRHL+ NG RISMFRAAFHTGY+P G+LRLTK QLDGAC D RF
Sbjct:  375 IRCRHLTDNGARISMFRAAFHTGYIPMGILRLTKGQLDGACQDARF 420
[Close]
BLAST of mRNA_S-dermatodea_contig84923.16661.1 vs. uniprot
Match: A0A2D4BKT9_PYTIN (Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKT9_PYTIN)

HSP 1 Score: 83.6 bits (205), Expect = 1.460e-17
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 IRCRHLSPNGRRISMFRAAFHTGYVPCGVLRLTKQQLDGACADDRFHQ 144
            +RCRHL+ +G R+SMFR AFHTGY+P G+LRLTK QLDGAC DDRF Q
Sbjct:  434 VRCRHLTDSGERMSMFRGAFHTGYIPQGILRLTKTQLDGACGDDRFDQ 481
[Close]
BLAST of mRNA_S-dermatodea_contig84923.16661.1 vs. uniprot
Match: A0A8K1C6I3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6I3_PYTOL)

HSP 1 Score: 83.6 bits (205), Expect = 1.460e-17
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 IRCRHLSPNGRRISMFRAAFHTGYVPCGVLRLTKQQLDGACADDRFHQ 144
            +RCRHL+ +G R+SMFR AFHTGY+P G+LRLTK QLDGAC DDRF Q
Sbjct:  456 VRCRHLTDSGERMSMFRGAFHTGYIPQGILRLTKAQLDGACGDDRFDQ 503
[Close]
BLAST of mRNA_S-dermatodea_contig84923.16661.1 vs. uniprot
Match: A0A7S2BHX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BHX5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.680e-17
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 IRCRHLSPNGRRISMFRAAFHTGYVPCGVLRLTKQQLDGACADDRF 138
            +RCRHL+  G R+SMFRA FHTGYVPCGVLRL K QLDGAC D RF
Sbjct:  180 LRCRHLTAKGTRVSMFRAGFHTGYVPCGVLRLNKAQLDGACTDPRF 225
[Close]
BLAST of mRNA_S-dermatodea_contig84923.16661.1 vs. uniprot
Match: A0A6G0WDR9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDR9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.720e-17
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 IRCRHLSPNGRRISMFRAAFHTGYVPCGVLRLTKQQLDGACADDRF 138
            IRCRHL+ +G RISMFRAAFHTGY+P G+LRLTK QLDGAC D+RF
Sbjct:  368 IRCRHLTDSGARISMFRAAFHTGYIPLGILRLTKGQLDGACQDNRF 413
[Close]
BLAST of mRNA_S-dermatodea_contig84923.16661.1 vs. uniprot
Match: A0A484ECN3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ECN3_BRELC)

HSP 1 Score: 82.8 bits (203), Expect = 2.730e-17
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 IRCRHLSPNGRRISMFRAAFHTGYVPCGVLRLTKQQLDGACADDRFHQ 144
            IRCRHL+ +G+R+SMFR AFHTGY+P G+LRLTK QLDGAC+D RF Q
Sbjct:  445 IRCRHLTNSGQRVSMFRGAFHTGYIPQGILRLTKAQLDGACSDSRFDQ 492
[Close]
BLAST of mRNA_S-dermatodea_contig84923.16661.1 vs. uniprot
Match: A0A1V9Y613_9STRA (Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y613_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.730e-17
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 IRCRHLSPNGRRISMFRAAFHTGYVPCGVLRLTKQQLDGACADDRF 138
            +RCRHL+ +G+RISMFRAAFHTGY+P G+LRLTK QLDGAC D RF
Sbjct:  374 VRCRHLTDSGQRISMFRAAFHTGYIPMGILRLTKAQLDGACQDPRF 419
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84923.16661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKP3_ECTSI1.850e-2491.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2C0A3_9STRA1.650e-1876.09Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1V9Y3Y7_9STRA5.980e-1878.26Phosphatidylinositol-3,4,5-trisphosphate 3-phospha... [more]
A0A485L0S5_9STRA1.460e-1780.43Aste57867_14201 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4BKT9_PYTIN1.460e-1772.92Phosphatidylinositol-3,4,5-trisphosphate 3-phospha... [more]
A0A8K1C6I3_PYTOL1.460e-1772.92Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2BHX5_9STRA2.680e-1776.09Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6G0WDR9_9STRA2.720e-1778.26Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A484ECN3_BRELC2.730e-1772.92Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A1V9Y613_9STRA2.730e-1776.09Phosphatidylinositol-3,4,5-trisphosphate 3-phospha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84923contigS-dermatodea_contig84923:156..299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue7.6e-20
Seed eggNOG ortholog2880.D8LKP3
KEGG koko:K18080
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG2283@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-03_001070.1
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.0372756-CDS-S-dermatodea_contig84923:155..2991622925347.0372756-CDS-S-dermatodea_contig84923:155..299Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84923 156..299 -
1694079871.8468955-CDS-S-dermatodea_contig84923:155..2991694079871.8468955-CDS-S-dermatodea_contig84923:155..299Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84923 156..299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84923.16661.1prot_S-dermatodea_contig84923.16661.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84923 156..299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84923.16661.1

>prot_S-dermatodea_contig84923.16661.1 ID=prot_S-dermatodea_contig84923.16661.1|Name=mRNA_S-dermatodea_contig84923.16661.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=48bp
IRCRHLSPNGRRISMFRAAFHTGYVPCGVLRLTKQQLDGACADDRFHQ
back to top

mRNA from alignment at S-dermatodea_contig84923:156..299-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84923.16661.1 ID=mRNA_S-dermatodea_contig84923.16661.1|Name=mRNA_S-dermatodea_contig84923.16661.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at S-dermatodea_contig84923:156..299- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCCGATGCAGGCATCTCAGCCCCAACGGCAGGCGGATTTCTATGTTTAG
GGCAGCGTTTCACACGGGGTACGTGCCGTGCGGGGTGCTGAGGCTGACCA
AGCAGCAGCTCGACGGGGCGTGCGCGGACGATCGATTCCACCAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig84923:156..299-

>mRNA_S-dermatodea_contig84923.16661.1 ID=mRNA_S-dermatodea_contig84923.16661.1|Name=mRNA_S-dermatodea_contig84923.16661.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at S-dermatodea_contig84923:156..299- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCCGATGCAGGCATCTCAGCCCCAACGGCAGGCGGATTTCTATGTTTAG
GGCAGCGTTTCACACGGGGTACGTGCCGTGCGGGGTGCTGAGGCTGACCA
AGCAGCAGCTCGACGGGGCGTGCGCGGACGATCGATTCCACCAGATCCGA
TGCAGGCATCTCAGCCCCAACGGCAGGCGGATTTCTATGTTTAGGGCAGC
GTTTCACACGGGGTACGTGCCGTGCGGGGTGCTGAGGCTGACCAAGCAGC
AGCTCGACGGGGCGTGCGCGGACGATCGATTCCACCAG
back to top