mRNA_S-dermatodea_contig84920.16660.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig84920.16660.1 vs. uniprot
Match: UPI0018CC4A9C (uncharacterized protein DDB_G0289975-like n=2 Tax=Hermetia illucens TaxID=343691 RepID=UPI0018CC4A9C) HSP 1 Score: 61.6 bits (148), Expect = 2.350e-9 Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 1 NYKRLNDITVIPRVSHVHIDELLDSLGERQSVFNFRLLAGFMQNAIDPGSIEKTALVTPSGLYHWLRMPRG 213
+Y++LN++TV + +ID +LD LG Q F L G+ Q I EKTA VTP GLY ++RMP G
Sbjct: 602 DYRKLNEVTVDDKFPLPNIDSILDKLGRAQYFFTLDLAKGYHQILIKEQDREKTAFVTPHGLYEFIRMPFG 672
BLAST of mRNA_S-dermatodea_contig84920.16660.1 vs. uniprot
Match: A0A4C1SQL8_EUMVA (Retrovirus-related Pol polyprotein from transposon 17.6 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SQL8_EUMVA) HSP 1 Score: 59.7 bits (143), Expect = 1.120e-8 Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 1 NYKRLNDITVIPRVSHVHIDELLDSLGERQSVFNFRLLAGFMQNAIDPGSIEKTALVTPSGLYHWLRMPRG 213
+Y++LN+IT+ + +ID +LD LG Q L G+ Q I+ EKTA VTP GLY ++RMP G
Sbjct: 295 DYRKLNEITIDDKFPLPNIDSILDKLGRAQYFTTLDLAKGYHQILIEEKDREKTAFVTPHGLYEFIRMPFG 365
BLAST of mRNA_S-dermatodea_contig84920.16660.1 vs. uniprot
Match: A0A2Z6RIT0_9GLOM (Uncharacterized protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RIT0_9GLOM) HSP 1 Score: 59.7 bits (143), Expect = 1.140e-8 Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1
Query: 1 NYKRLNDITVIPRVSHVHIDELLDSLGERQSVFNFRLLAGFMQNAIDPGSIEKTALVTPSGLYHWLRMPRGAS 219
+Y++LN IT ID+LL+S G+ + L +G+ Q A+D IEKTA VTP GLY +L MP G S
Sbjct: 904 DYRKLNAITKADAYPLPRIDDLLESFGQAKWFTTLDLASGYWQVAMDEADIEKTAFVTPFGLYEFLVMPFGLS 976
BLAST of mRNA_S-dermatodea_contig84920.16660.1 vs. uniprot
Match: A0A4C1SN68_EUMVA (Retrovirus-related Pol polyprotein from transposon 297 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SN68_EUMVA) HSP 1 Score: 58.2 bits (139), Expect = 3.870e-8 Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 1 NYKRLNDITVIPRVSHVHIDELLDSLGERQSVFNFRLLAGFMQNAIDPGSIEKTALVTPSGLYHWLRMPRG 213
+Y++LN+IT+ + +ID +LD LG Q L G+ Q I EKTA VTP GLY ++RMP G
Sbjct: 189 DYRKLNEITIDDKFPLPNIDSILDKLGRAQYFTTLDLAKGYHQILIREKDREKTAFVTPHGLYEFIRMPFG 259
BLAST of mRNA_S-dermatodea_contig84920.16660.1 vs. uniprot
Match: A0A015L6B7_RHIIW (Gag-pol fusion protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015L6B7_RHIIW) HSP 1 Score: 55.8 bits (133), Expect = 9.900e-8 Identity = 28/71 (39.44%), Postives = 40/71 (56.34%), Query Frame = 1
Query: 1 NYKRLNDITVIPRVSHVHIDELLDSLGERQSVFNFRLLAGFMQNAIDPGSIEKTALVTPSGLYHWLRMPRG 213
+Y++LN +T ID++L+S L +G+ Q A+DP IEKTA +TP GLY +L MP G
Sbjct: 33 DYRKLNAVTKADAYPLPRIDDMLESFSNATWFTTLDLASGYWQVAMDPADIEKTAFITPFGLYKFLVMPFG 103
BLAST of mRNA_S-dermatodea_contig84920.16660.1 vs. uniprot
Match: A0A803K5N9_XENTR (Ribonuclease H n=8 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A803K5N9_XENTR) HSP 1 Score: 57.0 bits (136), Expect = 1.020e-7 Identity = 28/71 (39.44%), Postives = 40/71 (56.34%), Query Frame = 1
Query: 1 NYKRLNDITVIPRVSHVHIDELLDSLGERQSVFNFRLLAGFMQNAIDPGSIEKTALVTPSGLYHWLRMPRG 213
+Y+RLND+T +DELLD LG + + L G+ Q + P + EK+A +TP GLY + MP G
Sbjct: 1125 DYRRLNDVTTTDAYPMPRVDELLDRLGNAKYLTTLDLSRGYWQIPLAPSAQEKSAFLTPFGLYQFTTMPFG 1195
BLAST of mRNA_S-dermatodea_contig84920.16660.1 vs. uniprot
Match: UPI001C1B92AB (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1B92AB) HSP 1 Score: 55.8 bits (133), Expect = 1.070e-7 Identity = 27/71 (38.03%), Postives = 40/71 (56.34%), Query Frame = 1
Query: 1 NYKRLNDITVIPRVSHVHIDELLDSLGERQSVFNFRLLAGFMQNAIDPGSIEKTALVTPSGLYHWLRMPRG 213
+Y++LN +T ID++L+S L +G+ Q A+DP +EKTA +TP GLY +L MP G
Sbjct: 9 DYRKLNAVTKADAYPLPRIDDMLESFSNATWFTTLDLASGYWQVAMDPADVEKTAFITPFGLYEFLVMPFG 79
BLAST of mRNA_S-dermatodea_contig84920.16660.1 vs. uniprot
Match: K7EZI4_PELSI (Ribonuclease H n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7EZI4_PELSI) HSP 1 Score: 56.6 bits (135), Expect = 1.330e-7 Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 1
Query: 1 NYKRLNDITVIPRVSHVHIDELLDSLGERQSVFNFRLLAGFMQNAIDPGSIEKTALVTPSGLYHWLRMPRGASG 222
+++++N I+ DELL+ LG+ + + L G+ Q +D S EKTA TPSGL+H++RMP G G
Sbjct: 44 DFRKVNAISKFDAYPMPRTDELLERLGKAKFITTLDLTKGYWQIPLDRESQEKTAFTTPSGLFHFVRMPFGLHG 117
BLAST of mRNA_S-dermatodea_contig84920.16660.1 vs. uniprot
Match: K7F184_PELSI (Ribonuclease H n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7F184_PELSI) HSP 1 Score: 56.6 bits (135), Expect = 1.340e-7 Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 1
Query: 1 NYKRLNDITVIPRVSHVHIDELLDSLGERQSVFNFRLLAGFMQNAIDPGSIEKTALVTPSGLYHWLRMPRGASG 222
+++++N I+ DELL+ LG+ + + L G+ Q +D S EKTA TPSGL+H++RMP G G
Sbjct: 126 DFRKVNAISKFDAYPMPRTDELLERLGKAKFITTLDLTKGYWQIPLDRESQEKTAFTTPSGLFHFVRMPFGLHG 199
BLAST of mRNA_S-dermatodea_contig84920.16660.1 vs. uniprot
Match: A0A158P4I8_TETUR (RNA-directed DNA polymerase n=1 Tax=Tetranychus urticae TaxID=32264 RepID=A0A158P4I8_TETUR) HSP 1 Score: 56.6 bits (135), Expect = 1.400e-7 Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1
Query: 1 NYKRLNDITVIPRVSHVHIDELLDSLGERQSVFNFRLLAGFMQNAIDPGSIEKTALVTPSGLYHWLRMPRG 213
+Y++LN+ITV + +I + LDSL + L +G+ Q A+DP +KTA VTPSGLY + R+P G
Sbjct: 727 DYRKLNEITVKDKFPLPNIQDYLDSLQGMKYFSLLDLRSGYHQMAMDPLDQQKTAFVTPSGLYEYTRLPFG 797 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84920.16660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig84920.16660.1 >prot_S-dermatodea_contig84920.16660.1 ID=prot_S-dermatodea_contig84920.16660.1|Name=mRNA_S-dermatodea_contig84920.16660.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=74bp NYKRLNDITVIPRVSHVHIDELLDSLGERQSVFNFRLLAGFMQNAIDPGSback to top mRNA from alignment at S-dermatodea_contig84920:478..699+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig84920.16660.1 ID=mRNA_S-dermatodea_contig84920.16660.1|Name=mRNA_S-dermatodea_contig84920.16660.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at S-dermatodea_contig84920:478..699+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig84920:478..699+ >mRNA_S-dermatodea_contig84920.16660.1 ID=mRNA_S-dermatodea_contig84920.16660.1|Name=mRNA_S-dermatodea_contig84920.16660.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at S-dermatodea_contig84920:478..699+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |