mRNA_S-dermatodea_contig8490.16658.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8490.16658.1
Unique NamemRNA_S-dermatodea_contig8490.16658.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8490.16658.1 vs. uniprot
Match: D7FHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD0_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 3.640e-66
Identity = 123/222 (55.41%), Postives = 160/222 (72.07%), Query Frame = 3 
Query:  153 REECAAVLP-AYVVEGAG-----------WLVAVHVDRKPVAMDAAAAGKKRLRGSVRAAPAHRYLPHQYFARAVEATLQSIAAADPGASVDIAVLSDGRWGGLVDEVGLPVDWDVPNEICCDLGLYCTQALVLLDDPNTVPDV---LECVGVADVFVASESVFSQASVTLSKHVKVLTDRWENDEEEMIVALNPANTVASMSNSERQNLDQTVGEYSECSA 773
            RE+CA VLP +++++  G           WLV+VHVDR P ++D +    KRLRG   AAP HR LPHQY+ RA+EA+L SIA A+PGA VD+A+ S+G+WGG+VDE+GLP+ WDV  E C DLGL+C+Q +VLL++  T P+    LEC+  +D+F+ASES FS+A   LS HVKVLTDRWE DEEEM+VALNPA T+A M +S+RQ L   V +Y ECSA
Sbjct:   57 REQCAGVLPDSFMMQHGGGGGEDGRDSESWLVSVHVDRAPSSVDLS----KRLRG---AAPLHRSLPHQYYVRAMEASLHSIAVAEPGAHVDVAIFSEGQWGGMVDEMGLPLYWDVAGETCDDLGLHCSQHVVLLNE-RTAPESSQSLECIAASDLFIASESKFSRAGAVLSDHVKVLTDRWEMDEEEMMVALNPATTIAGMPDSQRQLLRTLVADYHECSA 270
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BLAST of mRNA_S-dermatodea_contig8490.16658.1 vs. uniprot
Match: A0A6H5L6Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y9_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 2.230e-64
Identity = 121/222 (54.50%), Postives = 160/222 (72.07%), Query Frame = 3 
Query:  153 REECAAVLP-AYVVEGAG-----------WLVAVHVDRKPVAMDAAAAGKKRLRGSVRAAPAHRYLPHQYFARAVEATLQSIAAADPGASVDIAVLSDGRWGGLVDEVGLPVDWDVPNEICCDLGLYCTQALVLLDDPNTVPDV---LECVGVADVFVASESVFSQASVTLSKHVKVLTDRWENDEEEMIVALNPANTVASMSNSERQNLDQTVGEYSECSA 773
            RE+CA VLP +++++  G           WLV+VHVDR P ++D +    KRLRG+V   P HR LPHQY+ RA+EA+L SIA A+PGA VD+A+ S+G+WGG+VDE+GLP+ WDV  E C DLGL+CTQ +VLL++  T P+    L+C+  +D+F+ASES FS+A   LS HVKVLTDRWE DEEEM+VALNPA T+A M +S+RQ L   V +Y ECS+
Sbjct:  162 REQCAGVLPDSFMMQHGGGGAEDGRDSESWLVSVHVDRAPSSVDLS----KRLRGAV---PLHRSLPHQYYVRAMEASLHSIAVAEPGAHVDVAIFSEGQWGGMVDEMGLPLYWDVAGETCDDLGLHCTQHVVLLNE-RTAPESSQSLDCIAASDLFIASESKFSRAGAVLSDHVKVLTDRWEMDEEEMMVALNPATTIAGMPDSQRQLLRTLVADYHECSS 375
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8490.16658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHD0_ECTSI3.640e-6655.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6Y9_9PHAE2.230e-6454.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8490contigS-dermatodea_contig8490:2393..6997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1560
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8490.16658.1prot_S-dermatodea_contig8490.16658.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8490 3153..6755 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925346.9025435-UTR-S-dermatodea_contig8490:2392..31521622925346.9025435-UTR-S-dermatodea_contig8490:2392..3152Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8490 2393..3152 -
1694079871.7724938-UTR-S-dermatodea_contig8490:2392..31521694079871.7724938-UTR-S-dermatodea_contig8490:2392..3152Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8490 2393..3152 -
1622925346.964728-UTR-S-dermatodea_contig8490:6755..69971622925346.964728-UTR-S-dermatodea_contig8490:6755..6997Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8490 6756..6997 -
1694079871.8246331-UTR-S-dermatodea_contig8490:6755..69971694079871.8246331-UTR-S-dermatodea_contig8490:6755..6997Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8490 6756..6997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925346.9134908-CDS-S-dermatodea_contig8490:3152..33171622925346.9134908-CDS-S-dermatodea_contig8490:3152..3317Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8490 3153..3317 -
1694079871.782547-CDS-S-dermatodea_contig8490:3152..33171694079871.782547-CDS-S-dermatodea_contig8490:3152..3317Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8490 3153..3317 -
1622925346.92351-CDS-S-dermatodea_contig8490:4372..45011622925346.92351-CDS-S-dermatodea_contig8490:4372..4501Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8490 4373..4501 -
1694079871.7954075-CDS-S-dermatodea_contig8490:4372..45011694079871.7954075-CDS-S-dermatodea_contig8490:4372..4501Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8490 4373..4501 -
1622925346.9352024-CDS-S-dermatodea_contig8490:5698..58971622925346.9352024-CDS-S-dermatodea_contig8490:5698..5897Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8490 5699..5897 -
1694079871.8066294-CDS-S-dermatodea_contig8490:5698..58971694079871.8066294-CDS-S-dermatodea_contig8490:5698..5897Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8490 5699..5897 -
1622925346.9479797-CDS-S-dermatodea_contig8490:6690..67551622925346.9479797-CDS-S-dermatodea_contig8490:6690..6755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8490 6691..6755 -
1694079871.8155546-CDS-S-dermatodea_contig8490:6690..67551694079871.8155546-CDS-S-dermatodea_contig8490:6690..6755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8490 6691..6755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8490.16658.1

>prot_S-dermatodea_contig8490.16658.1 ID=prot_S-dermatodea_contig8490.16658.1|Name=mRNA_S-dermatodea_contig8490.16658.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=186bp
MDAAAAGKKRLRGSVRAAPAHRYLPHQYFARAVEATLQSIAAADPGASVD
IAVLSDGRWGGLVDEVGLPVDWDVPNEICCDLGLYCTQALVLLDDPNTVP
DVLECVGVADVFVASESVFSQASVTLSKHVKVLTDRWENDEEEMIVALNP
ANTVASMSNSERQNLDQTVGEYSECSALARKRAIF*
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mRNA from alignment at S-dermatodea_contig8490:2393..6997-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8490.16658.1 ID=mRNA_S-dermatodea_contig8490.16658.1|Name=mRNA_S-dermatodea_contig8490.16658.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4605bp|location=Sequence derived from alignment at S-dermatodea_contig8490:2393..6997- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTGGCTCTGCGCGCAGGGGACTGCTGCGGCGCCGATCGAATCACGGGGA
ATTCGGGGCACTCCGTCGACATCCCACAGCGCGTTGGCGTCTCCTGCCGC
GCGACACCGCTGCGAGGCTAGATTGAGCTGGGGAGGTGTGGCCTCAGAGG
GACGCGAGGAGTGCGCCGCGGTGCTTCCAGCTTATGTCGTGGAGGGAGCA
GGGTGGCTCGTGGCGGTGCACGTCGACAGAAAGCCTGTGGCGATGGACGC
AGCGGCTGCTGGGAAGAAGAGGCTGAGGGGTTCCGTGCGGGCAGCTCCCG
CGCACAGGTGGGTTTATTTGTTTTTTGTTTTTTCTCCGTCTGTATTATAT
TAGTGGGCGTTTTATCATTAGAAACGAGTCTTGTGATGGCGTGGTTATTG
TGTTGTACAGTAGTAGTTTTCTCTTCCGTGTTTGTTCGAAGGGGGGGCCC
AACGGTTCAGATATTGCCGCATTTACATGTACGTGGATGGGTCTAGGCTA
AGTCTTCCTCTTCCTTTTTACGGGGCCAGCGGTTCGTATATTTGTTTAAT
TCACATACTTCGAAGTACCCGTGGTACACAATATATTATAATGTTGAATG
TTGGGACACGTCCAAACGAACGATACTTACCTGCAGCAGTCTGCTGCAAG
CCAGCTTACGAAGTTCGAAGTATCATGGATGGGACAAAATCAATCTGCGC
GCATTCATAAATAATGTGATCGTTCGTTTGGTTTGTGCCATATGCGCTCG
ACGTGTATGTGCTGAAATGATACGTGCGCCTCTGACATTGCCGGACTTTT
GCACTAAAAGACCTTTACCATATTATACTTGTATGCACCGCTCAGCAAGA
TAACTACTCCTCGATATCGATATATGTTGAGAAAAGTAATAGTGTAACTA
ATGATGTACTTCCGAGTAGATAGATATATATATATGCATACACCAGTAAC
TCGACCAAGCAGCGGCCCTCTCGCAGCTCGGCCCATCATGCAGCTCGGCC
CATCATGACGCAGAATCGTTGGAATCGTTGAACATGCACATTTATTAAAT
ACTTTATTCCCGACGCCCTGCTTTTATCTATGTACTCGTATCTCGCCCAG
GTACCTGCCCCACCAGTACTTCGCGCGCGCCGTTGAGGCAACCCTGCAGA
GCATCGCCGCCGCGGATCCGGGGGCGAGCGTGGACATTGCCGTGCTGAGC
GATGGGCGATGGGGTGGACTAGTGGACGAGGTGGGGCTGCCTGTCGACTG
GGACGTGCCCAACGAGATCTGCTGCGACCTGGGGCTGTACTGTACTCAGG
TGGGCAACATGCGACGAGTGTACGCTGGCAGGCAGTTTTTTTTTTGCATG
TGCTTTGTCTTCCGTAAAGCGAGTGTGGACATAATCAATACCTGGTACCT
GGGTACATTTTATTATCAAATCGATCCATGAAATCAAATAGCAGATCAGT
AATGCGTTGTTCAGATGCGGTGCGCGTGATGAGCTGCAGAGATAGAGCTC
TAATATGATATCTCCGCAACTCGCTACGTACGACACGAGAGCTGCGCTGC
AGTAGATACTGCTTTTGTAGTGTACACATGAGAGCTCTATAATATGATGC
TCTTCGAATCACACTATAAGTCTACATGAGACGGTAGTACAGGAGAGAGC
TCTGCATGAGAGCTCTGTATGATAATAACAGAGTTGTATTTTTATTAAAC
AAATCTAAGATACCTGTATTTTACGTTGCCGCCCCGTATCAGATCGTATG
CCTCATGCATACATACGTACGTGTTCTTTTTCATCCTCCCCTTCCTTCAT
GTTCGTGTCTCATACAAGCAAAAACACTATTTACAACAGTAGTCAAGAAT
CGATTGACACGGGGTCGTGGGTCAGTTTTTCCCCAAGAGTATGTACGATA
GTAAGGAAAACAACAAGTGATGCTGTTGCGGCACATGTCATCCATCCCTA
CCAAAGCACCCTGTATGCCGGCGCGAGGTGCCGTTGCTTGGCATCAAGAC
GGGGAAGCAACATCGCGAGCTTGGAAACAAAACAAACCCTCCAACGAACA
ATTCGCGAACCGTCTGTATTATATACTGCTGCTGCACGAAGCGTTCGCGA
ACAGTCTACAACAATACGAAGCATTCGCGAACCGTGTGCCGTATCGTATA
CCCATTCGCTCTCCAAGAATAATGAAGGAATGAAGCCCTCGACTCGCCAG
TGACAAAAAAAGCATGCCGCCCCGTGTGGTGTGAGCTCTCGCATCGCCGC
AACAACACGCGCCCTGCATAGCCCACGTGGCTGATAAATATGTCACGAGG
CCGCCATTCGCACCGACCGGTCACTTCGTAATTTCCTAAATCACCCTCTC
AAACCCAGCTCGCTATAATTCATCATTTTGTGATCCCGGGCCATGTCCAA
GTCCAACCAGTCCCCCACTTGACCACCCCTCGTCCCCGTCCCGCTCCTAC
CCTCTGGTCTCAATCATGCCCTCAAATATAATGCCCGCTACGGCAGGCGC
TTGTCTTGCTCGACGACCCGAACACCGTACCGGATGTCCTTGAGTGCGTG
GGCGTTGCTGACGTGTTTGTGGCGAGCGAGAGCGTCTTCTCCCAGGCTTC
TGTGACGCTGTCGAAGCATGTCAAGGTAAGGGGTTGTTTCTTTTCGTTCG
TGCTTGCTGCTGCTGTGCAAAAATGTACATAGCGTGGTTTTGATGTGATA
CCAAAAATCACATTTCGATAGAAAAGGCGCGATTTTGATATGATACTACT
ATCATACTGTAGCAGCTTGCAAACTTATGATGGTGTGCTGTGGTATTATT
GTGTTTTCGCGCGCGATGCATAATATCTAGTCTGCGAAAGCATTCATTCC
CCCTTGTGCCCTTGCACCTACATAAAGCACACCTTGCTGAGAGAGAATAG
GTCGTGAGTATCTTAGCAGTGTACATACACCACCTCCGCCCGGTTTCTCC
TTGGTAATGGTGTGTCCAGGGATTTCTGGTGGGAGAGTGTGGCAATTTTA
ATGTCTGTGCATTCGTTGTCAAAGCGTGCGACACGACACAATCCTTATGT
GGTGGTTTATTGCTTCGTGTGACACGCAAGCCACAAAGTCGCAAGCAAGT
GCCGGTATTGCTTGACGTAGGGTAAGAAAAGCATATGATGCGCAACAAAG
GTTTCGCGTACAAGTCTGTTCGGTAAACGGCAAATATGTACCTCTCGAGG
ACGCCTGTGGTCAACTTCCTACTGGTTAAGGCATACCCCCCCCCCCCCAT
GATACATCTGTTGGCGCCGCCAACGCAAGAAAGGATGATGGCTATTATAG
CAGCTATCACAAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGG
GTTAGGATGATGGCTATTATAGCAGCTATCACAAGGGTTAGGGTTAGGGT
TAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGATGATGGCTA
TTATAGCAGCTATCACAAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGG
GTTAGGGTTAGGATGATGGCTATTATAGCAGCTATCACAACACCCTTGTC
GCACAGCCCGGCCGGCGAAGGCCCAGCAAATCGCTCCGTCCCGGTACTGT
TGGGATGCGAGGTCTATGGTCTAACGACTACGGCATGCACGATCAATGAG
TACACCCCCACACACACGCCCCGAACACAGGTGCTAACGGACAGGTGGGA
AAACGACGAGGAGGAGATGATCGTCGCTCTCAACCCGGCCAACACGGTCG
CCAGCATGTCCAACTCAGAGCGCCAAAACCTCGACCAGACCGTGGGGGAG
TACAGCGAGTGTTCCGCCCTGGCGCGCAAGAGGGCCATCTTCTAGAGGGG
CTGTGAGGCGGTGGCTTCAACGGGCCGGGCGGTGGTTTACAGAACCACGT
CAAGCTTTGAGAGCGGCGATCTTCGCGTACGGCTTTTGCAGCTCCTACTA
TTAATATTAATATTATAGGGCTTTTTTTGGCACGTCGCTTGAGGTTTTTG
GTTCGGCTCGTGTGCTTTGCGTGTGTGTACAAGCAAGCGTGTGCTGGGAA
AGACGTGTTTGAGTTTGCCCGAGCAAGCAGGTCTGGCCACTGGCGGGGGC
GATGTTGCGAGTCTTCTGAGCGCTTGCGTCATTACATAAATTGCATGGTG
CGCGGCGGCAGCAGGCCGGCCAGCTTGAGGTGATGGGATCCACTAAACAG
CTGCTTCGTACGACTGCGTGTGTGTACGTCGGGGTGAAGAGAGTTGTGAT
ACTGTAGCAGTTGGCTTTCTGTCACGCTCTCAAGTTGCCGCAAGAAGAGC
TCGGTCGAAATGTTGCTGCGTCTATACGAGCGGCCTTGCATCGGTCGCAG
AGATTTCGTCCCCAAGGGCAAGACGCGAGAGACAGGTTCACACGATGTTG
TCACGGTAAGAGCAAAGAACGACCGAGTCGAGAGGGCTTCGCACTTTCCC
TGCGTCGCCCCGAGAGCTCCTGGCCTCCCTCGCGAGAGAGATGATGCCAT
CGTGGTCCGATCCTGGGCACCAAAAAATTGTTATGTGTGGCTGTGTGATT
CGCCCACCAGCAGACTTAATTTACGCGGCATTGAGTAGGAACGTAGCTGG
CGAGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8490:2393..6997-

>mRNA_S-dermatodea_contig8490.16658.1 ID=mRNA_S-dermatodea_contig8490.16658.1|Name=mRNA_S-dermatodea_contig8490.16658.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at S-dermatodea_contig8490:2393..6997- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGCAGCGGCTGCTGGGAAGAAGAGGCTGAGGGGTTCCGTGCGGGC
AGCTCCCGCGCACAGATGGACGCAGCGGCTGCTGGGAAGAAGAGGCTGAG
GGGTTCCGTGCGGGCAGCTCCCGCGCACAGGTACCTGCCCCACCAGTACT
TCGCGCGCGCCGTTGAGGCAACCCTGCAGAGCATCGCCGCCGCGGATCCG
GGGGCGAGCGTGGACATTGCCGTGCTGAGCGATGGGCGATGGGGTGGACT
AGTGGACGAGGTGGGGCTGCCTGTCGACTGGGACGTGCCCAACGAGATCT
GCTGCGACCTGGGGCTGTACTGTACTCAGGTACCTGCCCCACCAGTACTT
CGCGCGCGCCGTTGAGGCAACCCTGCAGAGCATCGCCGCCGCGGATCCGG
GGGCGAGCGTGGACATTGCCGTGCTGAGCGATGGGCGATGGGGTGGACTA
GTGGACGAGGTGGGGCTGCCTGTCGACTGGGACGTGCCCAACGAGATCTG
CTGCGACCTGGGGCTGTACTGTACTCAGGCGCTTGTCTTGCTCGACGACC
CGAACACCGTACCGGATGTCCTTGAGTGCGTGGGCGTTGCTGACGTGTTT
GTGGCGAGCGAGAGCGTCTTCTCCCAGGCTTCTGTGACGCTGTCGAAGCA
TGTCAAGGCGCTTGTCTTGCTCGACGACCCGAACACCGTACCGGATGTCC
TTGAGTGCGTGGGCGTTGCTGACGTGTTTGTGGCGAGCGAGAGCGTCTTC
TCCCAGGCTTCTGTGACGCTGTCGAAGCATGTCAAGGTGCTAACGGACAG
GTGGGAAAACGACGAGGAGGAGATGATCGTCGCTCTCAACCCGGCCAACA
CGGTCGCCAGCATGTCCAACTCAGAGCGCCAAAACCTCGACCAGACCGTG
GGGGAGTACAGCGAGTGTTCCGCCCTGGCGCGCAAGAGGGCCATCTTCTA
GGTGCTAACGGACAGGTGGGAAAACGACGAGGAGGAGATGATCGTCGCTC
TCAACCCGGCCAACACGGTCGCCAGCATGTCCAACTCAGAGCGCCAAAAC
CTCGACCAGACCGTGGGGGAGTACAGCGAGTGTTCCGCCCTGGCGCGCAA
GAGGGCCATCTTCTAG
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