mRNA_S-dermatodea_contig8490.16657.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8490.16657.1
Unique NamemRNA_S-dermatodea_contig8490.16657.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8490.16657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8490contigS-dermatodea_contig8490:1338..2156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size819
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8490.16657.1prot_S-dermatodea_contig8490.16657.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8490 1395..1913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925346.8134437-UTR-S-dermatodea_contig8490:1337..13941622925346.8134437-UTR-S-dermatodea_contig8490:1337..1394Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8490 1338..1394 +
1694079871.736367-UTR-S-dermatodea_contig8490:1337..13941694079871.736367-UTR-S-dermatodea_contig8490:1337..1394Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8490 1338..1394 +
1622925346.8370924-UTR-S-dermatodea_contig8490:1913..21561622925346.8370924-UTR-S-dermatodea_contig8490:1913..2156Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8490 1914..2156 +
1694079871.755221-UTR-S-dermatodea_contig8490:1913..21561694079871.755221-UTR-S-dermatodea_contig8490:1913..2156Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8490 1914..2156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925346.823809-CDS-S-dermatodea_contig8490:1394..19131622925346.823809-CDS-S-dermatodea_contig8490:1394..1913Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8490 1395..1913 +
1694079871.7455478-CDS-S-dermatodea_contig8490:1394..19131694079871.7455478-CDS-S-dermatodea_contig8490:1394..1913Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8490 1395..1913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8490.16657.1

>prot_S-dermatodea_contig8490.16657.1 ID=prot_S-dermatodea_contig8490.16657.1|Name=mRNA_S-dermatodea_contig8490.16657.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=173bp
MPSLNDSIESIKMFCVSSFVVCTRLYIMHTFAVPSSTSLITYNTLLAYAK
NIAGRFQVRNQHRELSGAYKPINESPSKVEDSINLSTTPQNKKLHIFYNQ
TRHSPHPRLYTSYPTFKAAVHEKTTHHTPHTTHPLTSFQEFKTTHKTTSA
SRPRQTCSITLFLPLILAKSKE*
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mRNA from alignment at S-dermatodea_contig8490:1338..2156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8490.16657.1 ID=mRNA_S-dermatodea_contig8490.16657.1|Name=mRNA_S-dermatodea_contig8490.16657.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=819bp|location=Sequence derived from alignment at S-dermatodea_contig8490:1338..2156+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTATTATATAGTATTATTAGTATTAAACTGACTATTCTTTTTAAACTAG
AGAATCAATGCCATCACTGAATGATAGCATTGAATCCATCAAGATGTTTT
GTGTTAGCAGTTTCGTTGTTTGTACTCGCTTGTATATTATGCATACCTTT
GCGGTACCTTCATCCACTTCCTTAATTACCTATAATACCTTACTAGCTTA
CGCCAAAAATATTGCAGGGCGGTTTCAAGTGCGAAACCAACACCGAGAGC
TTAGTGGCGCCTATAAGCCTATAAACGAAAGCCCCTCAAAAGTAGAAGAC
TCAATAAACCTTAGCACAACACCGCAAAATAAAAAACTACATATTTTTTA
TAATCAAACTCGTCACTCACCCCACCCTCGTCTCTATACATCGTATCCTA
CCTTCAAAGCAGCGGTGCATGAAAAGACAACACACCACACACCACACACT
ACACACCCACTCACAAGTTTCCAAGAATTCAAAACAACACACAAGACCAC
CAGCGCAAGCCGCCCCCGACAAACATGCAGCATCACTCTCTTCCTTCCGC
TCATCCTGGCAAAGAGCAAAGAGTGAAAACGACTCCGTGTAACGTCCTCG
TTCGTTACTTATGCATGTATGTACAGCCAGCGAGCGTTAGAGTCAGACCC
GACCGATGGTGCCGATCTCCTTGCCGCGTGAACTAAGGTGCGCCTCGCGC
ATCGCGCGCGCATCGTCTCAATCAAAAGATAACACAGGGCAGCTGCTACA
GTACCTATATAGCAATAGCGTGCTCTCTATAAGGCACAACACAGAATACT
GTAAAGTCAAGTCGACTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8490:1338..2156+

>mRNA_S-dermatodea_contig8490.16657.1 ID=mRNA_S-dermatodea_contig8490.16657.1|Name=mRNA_S-dermatodea_contig8490.16657.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at S-dermatodea_contig8490:1338..2156+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCATCACTGAATGATAGCATTGAATCCATCAAGATGTTTTGTGTTAG
CAGTTTCGTTGTTTGTACTCGCTTGTATATTATGCATACCTTTGCGGTAC
CTTCATCCACTTCCTTAATTACCTATAATACCTTACTAGCTTACGCCAAA
AATATTGCAGGGCGGTTTCAAGTGCGAAACCAACACCGAGAGCTTAGTGG
CGCCTATAAGCCTATAAACGAAAGCCCCTCAAAAGTAGAAGACTCAATAA
ACCTTAGCACAACACCGCAAAATAAAAAACTACATATTTTTTATAATCAA
ACTCGTCACTCACCCCACCCTCGTCTCTATACATCGTATCCTACCTTCAA
AGCAGCGGTGCATGAAAAGACAACACACCACACACCACACACTACACACC
CACTCACAAGTTTCCAAGAATTCAAAACAACACACAAGACCACCAGCGCA
AGCCGCCCCCGACAAACATGCAGCATCACTCTCTTCCTTCCGCTCATCCT
GGCAAAGAGCAAAGAGTGAATGCCATCACTGAATGATAGCATTGAATCCA
TCAAGATGTTTTGTGTTAGCAGTTTCGTTGTTTGTACTCGCTTGTATATT
ATGCATACCTTTGCGGTACCTTCATCCACTTCCTTAATTACCTATAATAC
CTTACTAGCTTACGCCAAAAATATTGCAGGGCGGTTTCAAGTGCGAAACC
AACACCGAGAGCTTAGTGGCGCCTATAAGCCTATAAACGAAAGCCCCTCA
AAAGTAGAAGACTCAATAAACCTTAGCACAACACCGCAAAATAAAAAACT
ACATATTTTTTATAATCAAACTCGTCACTCACCCCACCCTCGTCTCTATA
CATCGTATCCTACCTTCAAAGCAGCGGTGCATGAAAAGACAACACACCAC
ACACCACACACTACACACCCACTCACAAGTTTCCAAGAATTCAAAACAAC
ACACAAGACCACCAGCGCAAGCCGCCCCCGACAAACATGCAGCATCACTC
TCTTCCTTCCGCTCATCCTGGCAAAGAGCAAAGAGTGA
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