mRNA_S-dermatodea_contig84894.16655.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84894.16655.1
Unique NamemRNA_S-dermatodea_contig84894.16655.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig84894.16655.1 vs. uniprot
Match: D8LN21_ECTSI (Threonine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN21_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 2.980e-35
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 GSAAIYGLRGKAHIDCFIMFPEGRVSEIQERQMTTVPDRNIQCISVEGSFDDCQDIVKAAFADKPFR 201
            GSAAIYGLRGKAH++CFIMFPEGRVSEIQERQMTTVPD NI C+SVEGSFDDCQDIVKAAFADKPFR
Sbjct:  164 GSAAIYGLRGKAHVNCFIMFPEGRVSEIQERQMTTVPDANIHCVSVEGSFDDCQDIVKAAFADKPFR 230
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BLAST of mRNA_S-dermatodea_contig84894.16655.1 vs. uniprot
Match: A0A835Z4E7_9STRA (Threonine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4E7_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.210e-29
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 GSAAIYGLRGKAHIDCFIMFPEGRVSEIQERQMTTVPDRNIQCISVEGSFDDCQDIVKAAFADKPFR 201
            GSAAIYG+RGK H+DCFI+FPEGRVS+IQERQMTTV D NI C+SVEGSFDDCQ IVKAAF DK FR
Sbjct:  152 GSAAIYGMRGKKHMDCFILFPEGRVSQIQERQMTTVEDTNIHCVSVEGSFDDCQAIVKAAFNDKEFR 218
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BLAST of mRNA_S-dermatodea_contig84894.16655.1 vs. uniprot
Match: A0A7S2UCD3_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCD3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.280e-29
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 GSAAIYGLRGKAHIDCFIMFPEGRVSEIQERQMTTVPDRNIQCISVEGSFDDCQDIVKAAFADKPFR 201
            GSAAIYGLRGK  +DCFI++P+GRVSEIQERQMTTVPD NI C++VEG+FDDCQDIVKA+FAD  FR
Sbjct:  150 GSAAIYGLRGKKGVDCFILYPQGRVSEIQERQMTTVPDDNIHCVAVEGTFDDCQDIVKASFADVEFR 216
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BLAST of mRNA_S-dermatodea_contig84894.16655.1 vs. uniprot
Match: A0A7S2SVW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVW5_9STRA)

HSP 1 Score: 112 bits (280), Expect = 9.810e-29
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 GSAAIYGLRGKAHIDCFIMFPEGRVSEIQERQMTTVPDRNIQCISVEGSFDDCQDIVKAAFADKPFR 201
            GSAAIYGLRGKA+++CFI++P+GRVS IQERQM TVPD NI C+ VEG+FDDCQDIVK AF DK FR
Sbjct:  153 GSAAIYGLRGKANVNCFILYPKGRVSAIQERQMATVPDSNIHCLCVEGNFDDCQDIVKGAFMDKSFR 219
[Close]
BLAST of mRNA_S-dermatodea_contig84894.16655.1 vs. uniprot
Match: A0A7S2SVX2_9STRA (Threonine synthase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVX2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.550e-28
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 GSAAIYGLRGKAHIDCFIMFPEGRVSEIQERQMTTVPDRNIQCISVEGSFDDCQDIVKAAFADKPFR 201
            GSAAIYGLRGKA+++CFI++P+GRVS IQERQM TVPD NI C+ VEG+FDDCQDIVK AF DK FR
Sbjct:  153 GSAAIYGLRGKANVNCFILYPKGRVSAIQERQMATVPDSNIHCLCVEGNFDDCQDIVKGAFMDKSFR 219
[Close]
BLAST of mRNA_S-dermatodea_contig84894.16655.1 vs. uniprot
Match: W7TYE5_9STRA (Threonine synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYE5_9STRA)

HSP 1 Score: 113 bits (282), Expect = 6.860e-28
Identity = 51/67 (76.12%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 GSAAIYGLRGKAHIDCFIMFPEGRVSEIQERQMTTVPDRNIQCISVEGSFDDCQDIVKAAFADKPFR 201
            GSAAIYGLRGKA++ CFI++P+GR S IQERQMTTVPD+N+QCI+VEG+FDDCQ+IVKAAF D  FR
Sbjct:  154 GSAAIYGLRGKANVRCFILYPKGRTSAIQERQMTTVPDKNVQCIAVEGTFDDCQNIVKAAFQDASFR 220
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BLAST of mRNA_S-dermatodea_contig84894.16655.1 vs. uniprot
Match: A0A7S2IFR4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IFR4_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.610e-27
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 GSAAIYGLRGKAHIDCFIMFPEGRVSEIQERQMTTVPDRNIQCISVEGSFDDCQDIVKAAFADKPFR 201
            GSAAIYGLRGK  +DC I+FP GRVS IQERQMTTVPD NI C++++G+FDDCQD+VKA+FADK FR
Sbjct:  140 GSAAIYGLRGKKGVDCVILFPHGRVSAIQERQMTTVPDANIHCVAIDGTFDDCQDLVKASFADKDFR 206
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BLAST of mRNA_S-dermatodea_contig84894.16655.1 vs. uniprot
Match: A0A7S2NSM0_9STRA (Threonine synthase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSM0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.740e-27
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 GSAAIYGLRGKAHIDCFIMFPEGRVSEIQERQMTTVPDRNIQCISVEGSFDDCQDIVKAAFADKPFR 201
            GSAAIYGLRGK  IDC I++P+GRVSEIQERQMTTVPD NI C+SV+G+FDDCQD+VKAAF D  FR
Sbjct:  163 GSAAIYGLRGKEGIDCVILYPKGRVSEIQERQMTTVPDDNIHCVSVDGTFDDCQDLVKAAFRDASFR 229
[Close]
BLAST of mRNA_S-dermatodea_contig84894.16655.1 vs. uniprot
Match: A0A7S1Z2C3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2C3_TRICV)

HSP 1 Score: 112 bits (279), Expect = 2.400e-27
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 GSAAIYGLRGKAHIDCFIMFPEGRVSEIQERQMTTVPDRNIQCISVEGSFDDCQDIVKAAFADKPFR 201
            GSAAIYGLRGK  +DC I++PEGRVS IQERQMTTVPD NI C++VEG+FDDCQD+VKA+FAD  FR
Sbjct:  184 GSAAIYGLRGKKGVDCVILYPEGRVSAIQERQMTTVPDDNIHCVAVEGTFDDCQDLVKASFADAAFR 250
[Close]
BLAST of mRNA_S-dermatodea_contig84894.16655.1 vs. uniprot
Match: A0A7S4SNE2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SNE2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.680e-26
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 GSAAIYGLRGKAHIDCFIMFPEGRVSEIQERQMTTVPDRNIQCISVEGSFDDCQDIVKAAFADKPFR 201
            GSAAIYGLRGK  +DC I+FP GRVS IQERQMTTVPD NI C++V+G+FDDCQDIVKA+F D  FR
Sbjct:  155 GSAAIYGLRGKKGVDCVILFPHGRVSAIQERQMTTVPDSNIHCVAVDGTFDDCQDIVKASFGDADFR 221
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84894.16655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN21_ECTSI2.980e-3592.54Threonine synthase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835Z4E7_9STRA2.210e-2982.09Threonine synthase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2UCD3_9STRA6.280e-2979.10Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A7S2SVW5_9STRA9.810e-2976.12Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SVX2_9STRA4.550e-2876.12Threonine synthase (Fragment) n=1 Tax=Rhizochromul... [more]
W7TYE5_9STRA6.860e-2876.12Threonine synthase n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A7S2IFR4_9STRA1.610e-2774.63Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2NSM0_9STRA1.740e-2777.61Threonine synthase n=1 Tax=Leptocylindrus danicus ... [more]
A0A7S1Z2C3_TRICV2.400e-2776.12Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4SNE2_9STRA1.680e-2674.63Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84894contigS-dermatodea_contig84894:303..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue2.6e-29
Seed eggNOG ortholog2880.D8LN21
Preferred nameTHR4
KEGG rclassRC00017,RC00526
KEGG koko:K01733
KEGG ReactionR01466,R05086
KEGG Pathwayko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230
KEGG ModuleM00018
GOsGO:0003674,GO:0003824,GO:0004795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006566,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016053,GO:0016311,GO:0016829,GO:0016835,GO:0016838,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.2-oxobutyrate metabolic process
EggNOG OGsCOG0498@1,KOG2616@2759
EC4.2.3.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925346.5567496-CDS-S-dermatodea_contig84894:302..5121622925346.5567496-CDS-S-dermatodea_contig84894:302..512Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84894 303..512 +
1694079871.4819624-CDS-S-dermatodea_contig84894:302..5121694079871.4819624-CDS-S-dermatodea_contig84894:302..512Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84894 303..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84894.16655.1prot_S-dermatodea_contig84894.16655.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84894 303..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84894.16655.1

>prot_S-dermatodea_contig84894.16655.1 ID=prot_S-dermatodea_contig84894.16655.1|Name=mRNA_S-dermatodea_contig84894.16655.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=70bp
GSAAIYGLRGKAHIDCFIMFPEGRVSEIQERQMTTVPDRNIQCISVEGSF
DDCQDIVKAAFADKPFRYFY
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mRNA from alignment at S-dermatodea_contig84894:303..512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84894.16655.1 ID=mRNA_S-dermatodea_contig84894.16655.1|Name=mRNA_S-dermatodea_contig84894.16655.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig84894:303..512+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCTCTGCCGCGATCTACGGCCTTAGAGGAAAGGCACACATAGACTGCTT
CATCATGTTCCCGGAGGGCCGAGTGAGCGAGATCCAGGAGCGGCAGATGA
CGACCGTGCCGGACAGAAACATCCAGTGCATCAGCGTAGAAGGAAGTTTC
GATGACTGCCAGGACATCGTCAAGGCGGCCTTCGCGGACAAACCCTTCAG
GTATTTTTAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig84894:303..512+

>mRNA_S-dermatodea_contig84894.16655.1 ID=mRNA_S-dermatodea_contig84894.16655.1|Name=mRNA_S-dermatodea_contig84894.16655.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at S-dermatodea_contig84894:303..512+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCTCTGCCGCGATCTACGGCCTTAGAGGAAAGGCACACATAGACTGCTT
CATCATGTTCCCGGAGGGCCGAGTGAGCGAGATCCAGGAGCGGCAGATGA
CGACCGTGCCGGACAGAAACATCCAGTGCATCAGCGTAGAAGGAAGTTTC
GATGACTGCCAGGACATCGTCAAGGCGGCCTTCGCGGACAAACCCTTCAG
GTATTTTTATGGCTCTGCCGCGATCTACGGCCTTAGAGGAAAGGCACACA
TAGACTGCTTCATCATGTTCCCGGAGGGCCGAGTGAGCGAGATCCAGGAG
CGGCAGATGACGACCGTGCCGGACAGAAACATCCAGTGCATCAGCGTAGA
AGGAAGTTTCGATGACTGCCAGGACATCGTCAAGGCGGCCTTCGCGGACA
AACCCTTCAGGTATTTTTAT
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