mRNA_S-dermatodea_contig8488.16653.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8488.16653.1
Unique NamemRNA_S-dermatodea_contig8488.16653.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8488.16653.1 vs. uniprot
Match: D8LLC8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC8_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 8.400e-118
Identity = 213/302 (70.53%), Postives = 234/302 (77.48%), Query Frame = 3 
Query:   63 MGRKKKFIDKKESSTFHVVHRSQQDKAQEGEEEASEFVLIPSGPSRDNK----RAAEGKGKSDEASLREQRDHINALGLPNDGYDYEQHLKSMGGGTFVSKTGKVQHFAEGNA-GARGGG-RVTLPEEALPSEETLDRQLEAVTISEKVMDGDLRRALAAGLADVGEEGSEDDEGEGGNLLDDDFVLQAAGAEDGEGFDFDAHVARLMEASAHETGLRQRTAADDLQTKGLQRLRRDGDEESASEXXXXXXXXXXX----SGEFDETLLEGLDLGGEGASRAAA--EGGSDERAVLDAQFEA 932
            MGRKKKFIDKKES+TFHVVHRSQQDKA EGEEEASEFVLIPSGP RD++    R A GKGK        +RDHINALGLPNDGYDY+QHLKSMGGGTFVSKTGKVQHFAEGN+ GARGGG +  +PEEALPS ETLDRQLEAVTISEKVMDGD+RRALAAGLADVGEE  +D+     N+LDDDFV+QAAGA +  GFDFDAHVARLMEASA ETGLRQR+  DDLQTKGL RLRRD D ES                  SGE D+ LLEGLD+ G  A+      EG  ++RAVLD+QFEA
Sbjct:    1 MGRKKKFIDKKESTTFHVVHRSQQDKANEGEEEASEFVLIPSGPPRDSRPQDERKAAGKGKGKGGVAGAERDHINALGLPNDGYDYDQHLKSMGGGTFVSKTGKVQHFAEGNSQGARGGGAKPAIPEEALPSGETLDRQLEAVTISEKVMDGDMRRALAAGLADVGEEDWDDES----NMLDDDFVVQAAGAGEDGGFDFDAHVARLMEASAKETGLRQRSRDDDLQTKGLVRLRRDSDSESDDSEDDVATLDGGAGSDDSGEIDDALLEGLDISGAAAAGGGVPGEGTEEDRAVLDSQFEA 298
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BLAST of mRNA_S-dermatodea_contig8488.16653.1 vs. uniprot
Match: A0A7S0XBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XBG0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.140e-31
Identity = 89/214 (41.59%), Postives = 115/214 (53.74%), Query Frame = 3 
Query:   72 KKKFIDKKESSTFHVVHRSQQDKAQEGEEEASEFVLIPSGPSR-DNKR------AAEGKGKSDEASLREQRDHINALGLPNDGYDYEQHLKSMGGGTFVSKTGKVQHFAEGNAGARGGGRVTLPEEALPSEETLDRQLEAVTISEKVMDGDLRRALAAGLADVGEEGSEDDEGEGGNLLDDDFVLQAAGAEDGEGFDFDAHVARLMEASAHETG 692
            KK FI K E  T+HVVHRSQ D A   EE+ S++VLIP+  S  DN+R      +       D      + DHIN LG  NDGYDY +H+K + GG F+   G++               + +PE+ LPS E  DR LEA+ IS+K MD D+R AL         +G ED E E    LDDDFV+Q     +   FDFDAH+ARL+  S  + G
Sbjct:    3 KKPFIKKSEGQTYHVVHRSQTDSAYANEEKPSDYVLIPAQLSNNDNRRKFKDNQSVYSNNSIDFKQFTRKGDHINHLGFKNDGYDYSKHIKVVDGGKFIGLNGELLERPVVK-------EIEIPEDLLPSAEEFDRNLEAIVISDKYMDDDIRNALDF-------DGDEDGEFE---ELDDDFVIQVMAEPEVPDFDFDAHIARLIANSEKDLG 199
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BLAST of mRNA_S-dermatodea_contig8488.16653.1 vs. uniprot
Match: A0A7S0XBI8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XBI8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.380e-30
Identity = 89/214 (41.59%), Postives = 115/214 (53.74%), Query Frame = 3 
Query:   72 KKKFIDKKESSTFHVVHRSQQDKAQEGEEEASEFVLIPSGPSR-DNKR------AAEGKGKSDEASLREQRDHINALGLPNDGYDYEQHLKSMGGGTFVSKTGKVQHFAEGNAGARGGGRVTLPEEALPSEETLDRQLEAVTISEKVMDGDLRRALAAGLADVGEEGSEDDEGEGGNLLDDDFVLQAAGAEDGEGFDFDAHVARLMEASAHETG 692
            KK FI K E  T+HVVHRSQ D A   EE+ S++VLIP+  S  DN+R      +       D      + DHIN LG  NDGYDY +H+K + GG F+   G++               + +PE+ LPS E  DR LEA+ IS+K MD D+R AL         +G ED E E    LDDDFV+Q     +   FDFDAH+ARL+  S  + G
Sbjct:    3 KKPFIKKSEGQTYHVVHRSQTDSAYANEEKPSDYVLIPAQLSNNDNRRKFKDNQSVYSNNSIDFKQFTRKGDHINHLGFKNDGYDYSKHIKVVDGGKFIGLNGELLERPVVK-------EIEIPEDLLPSAEEFDRNLEAIVISDKYMDDDIRNALDF-------DGDEDGEFE---ELDDDFVIQVMAEPEVPDFDFDAHIARLIANSEKDLG 199
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BLAST of mRNA_S-dermatodea_contig8488.16653.1 vs. uniprot
Match: A0A836CIF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.170e-27
Identity = 107/283 (37.81%), Postives = 138/283 (48.76%), Query Frame = 3 
Query:   72 KKKFIDKKESSTFHVVHRSQQDKAQ-EGEE-EASEFVLIPSGPSRDNKRAAEGKGKSDE--------ASLREQRDHINALG----------------------LPNDG--YDYEQHLKSMGGGTFVSKTGKVQHFAEGNAGARGGGRVTLPEEALPSEE-TLDRQLEAVTISEKVMDGDLRRALAAGLADVGE-----------------------------EGSEDDEGEGGNLLDDDFVLQAAG--AEDGEGFDFDAHVARLMEASAHETGLRQRTAADDL 722
            KKKFI+  + +T+ +VHRSQ DKA  EG+E +ASEFVL+P+G  +  + A    G ++         A     R+HINA                        LP+DG  YDYE HLK+MGGGTF++K G+V         AR G R  LP E+LP+EE  + R L A+TIS+KVMD D+                                          E  ++ E       +DDFVLQAAG   +D  GFDFDAH+ARL+ AS  E GLR R A DD 
Sbjct:    3 KKKFIESGKGTTYRLVHRSQLDKAAAEGDEGDASEFVLVPAGEIKQRRIATRRNGGTNAQHGSGGGGARYTVAREHINAFXXXXXXXXXXXXXXXXXXXXXXXLPDDGTGYDYESHLKTMGGGTFINKEGRVGSVPL-PGDAREGRRAVLPAESLPAEEGEVARNLAAITISDKVMDDDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEEFDELEXXXXXXXEDDFVLQAAGDGGDDDGGFDFDAHIARLIAASEREVGLRPRGADDDF 284
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BLAST of mRNA_S-dermatodea_contig8488.16653.1 vs. uniprot
Match: A0A6A4EL32_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EL32_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.440e-27
Identity = 99/258 (38.37%), Postives = 134/258 (51.94%), Query Frame = 3 
Query:   63 MGRKKKFIDKKESSTFHVVHRSQQDKAQEGEEEASEFVLIPSG------------------------------PSRDNKRAAEGKGKSDEASLR-------------EQRDHINALGLPNDGYDYEQHLKSMGGGTFVSKTGKVQHFAEGNAGARGGGRVTLPEEALPSEETLDRQLEAVTISEKVMDGDLRRALAAGLADVGEEGSEDDEGEGGNLLDDDFVLQAA--GAEDG--EGFDFDAHVARLMEASAHETGL 695
            M RKK+FIDKK +  FHVVHRSQ+D  +  + EAS++VL+ S                               P   + ++ + K KS  +S R             E  D ++  GLP DGYDY QH+K MG G F S T +     E  A +R   +V LPE+ALPS E  DR L+A+T++  VMD DLR AL      V +E  E+        LDD+FV+QAA   A+D   + FD+DAH+A+LMEA++  T L
Sbjct:    1 MVRKKQFIDKKSAQHFHVVHRSQRD-PKANDPEASKYVLLSSSQHVELRSDSESDDEYEDDGGDSELDSDDEMPDLVDTKSTKPKKKSSSSSGRAAFPVRKVRFGGVEAEDLVDENGLPRDGYDYSQHMKEMGQGKFYSATSRFDAGEEARALSR---KVDLPEDALPSAEEQDRLLDAITLTTDVMDEDLREAL------VNDEAFEE--------LDDNFVVQAAEQNADDAGTDDFDYDAHIAKLMEAASGVTPL 240
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BLAST of mRNA_S-dermatodea_contig8488.16653.1 vs. uniprot
Match: A0A3F2RYW0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RYW0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 7.250e-26
Identity = 93/245 (37.96%), Postives = 122/245 (49.80%), Query Frame = 3 
Query:   66 GRKKKFIDKKESSTFHVVHRSQQDKAQEGEEEASEFVLIPS-------------------------------GPSRDNKRAAEGKGKSDEASLR------EQRDHINALGLPNDGYDYEQHLKSMGGGTFVSKTGKVQHFAEGNAGARGGGRVTLPEEALPSEETLDRQLEAVTISEKVMDGDLRRALAAGLADVGEEGSEDDEGEGGNLLDDDFVLQAAGAEDGEG----FDFDAHVARLMEAS 677
            GRKK+FI+KK +  +HVVHRSQ+D  +  + EAS++VL+ S                                P         GKGK    + +      E  D ++  GLP DGYDY QH+K MG G F S T +     E  A +R    V LPE+ALPS E  +R L+A+T++  VMD DLR AL  G A                 LDD+FVLQAA   + EG    FD+DAH+A+LMEA+
Sbjct:  342 GRKKQFINKKTAQHYHVVHRSQRD-PRANDPEASKYVLLSSTQQDVELRSDSEYEDSELDSDDEMPDLVDTPAPKAKTSLKPTGKGKIAFPTRKVRFGSVEAEDLVDENGLPRDGYDYAQHMKEMGHGKFYSATSRFDASEESRAMSR---HVELPEDALPSGEEQERLLDAITLTTDVMDEDLREALVNGGAF--------------EELDDNFVLQAAEENEAEGATDDFDYDAHIAKLMEAA 568
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BLAST of mRNA_S-dermatodea_contig8488.16653.1 vs. uniprot
Match: H3GXQ9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXQ9_PHYRM)

HSP 1 Score: 117 bits (293), Expect = 7.700e-26
Identity = 96/244 (39.34%), Postives = 127/244 (52.05%), Query Frame = 3 
Query:   69 RKKKFIDKKESSTFHVVHRSQQDKAQEGEEEASEFVLIPSG-------------------------------PSRDNKRAAEGKGKSDEASLREQRDHINALGLPNDGYDYEQHLKSMGGGTFVSKTGKVQHFAEGNAGARGGGRVTLPEEALPSEETLDRQLEAVTISEKVMDGDLRRALAAGLADVGEEGSEDDEGEGGNLLDDDFVLQAA--GAEDG--EGFDFDAHVARLMEASAHETGL 695
            RKK+FI+KK +  FHVVHRSQ+D  +  + EAS++VL+ S                                PS   K  A    +       E  D ++  GLP DGYDY QH+K MG G F S T +     E  A +R   +V LPE+ALPS E  DR L+A+T++  VMD DLR AL      V +E  E+        LDD+FV+QAA   AED   + FD+DAH+A+LMEA++  T L
Sbjct:   21 RKKQFINKKTAQHFHVVHRSQRD-PKANDPEASKYVLLSSSQHVELRSDSESDDDXXXXXXXXXXXXXLVDAPSAPKKSKAAFPVRKVRFGGVEAEDLVDENGLPRDGYDYTQHMKEMGQGKFYSATSRFDAGEEARALSR---KVDLPEDALPSVEEQDRLLDAITLTTDVMDVDLREAL------VNDEAFEE--------LDDNFVVQAAEDNAEDAGTDDFDYDAHIAKLMEAASGVTPL 246
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BLAST of mRNA_S-dermatodea_contig8488.16653.1 vs. uniprot
Match: W4FC43_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FC43_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.470e-25
Identity = 101/246 (41.06%), Postives = 132/246 (53.66%), Query Frame = 3 
Query:   42 HLHQ-QQTMGRKKK-FIDKKESSTFHVVHRSQQDKAQEGEEEASEFVLIPSGPSRDNKRAAEGKGKSDEASLRE---------------------QRDHINALGLPNDGYDYEQHLKSMGGGTFVSKTGKVQHFAEGNAGARGGGRVTLPEEALPSEETLDRQLEAVTISEKVMDGDLRRALAAGLADVGEEGSEDDEGEGGNLLDDDFVLQAA---------GAEDG--EGFDFDAHVARLMEAS 677
            H HQ QQTMG+K K FI+KKE+  FHVVHRSQ+D     +  AS+FVL+ S P+ D+         SD++ L +                       D +N LG+ NDGYDY +H+K MG G F S  G    + EG AG     RV LP++ L S    DR L+A+T++E VMD DLR AL      V +E  E+        L DDF+LQAA         GA  G  +GFD+DAH+A+LM A+
Sbjct:   22 HSHQPQQTMGKKSKAFINKKEAQHFHVVHRSQRDPLI-NDPSASKFVLLSSKPAVDDY-------DSDDSDLPDLVPQSATAPPAAKAVRFGNVVAHDLVNELGMVNDGYDYSKHMKEMGQGHFYSAGGT---YDEG-AGLLNK-RVVLPDDVLASANEHDRMLDAITLTEDVMDEDLREAL------VNDEAFEE--------LTDDFMLQAAEDLPVEQGDGAAAGGADGFDYDAHIAKLMAAA 240
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BLAST of mRNA_S-dermatodea_contig8488.16653.1 vs. uniprot
Match: W4FCN5_9STRA (Uncharacterized protein n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FCN5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.230e-25
Identity = 101/246 (41.06%), Postives = 132/246 (53.66%), Query Frame = 3 
Query:   42 HLHQ-QQTMGRKKK-FIDKKESSTFHVVHRSQQDKAQEGEEEASEFVLIPSGPSRDNKRAAEGKGKSDEASLRE---------------------QRDHINALGLPNDGYDYEQHLKSMGGGTFVSKTGKVQHFAEGNAGARGGGRVTLPEEALPSEETLDRQLEAVTISEKVMDGDLRRALAAGLADVGEEGSEDDEGEGGNLLDDDFVLQAA---------GAEDG--EGFDFDAHVARLMEAS 677
            H HQ QQTMG+K K FI+KKE+  FHVVHRSQ+D     +  AS+FVL+ S P+ D+         SD++ L +                       D +N LG+ NDGYDY +H+K MG G F S  G    + EG AG     RV LP++ L S    DR L+A+T++E VMD DLR AL      V +E  E+        L DDF+LQAA         GA  G  +GFD+DAH+A+LM A+
Sbjct:   22 HSHQPQQTMGKKSKAFINKKEAQHFHVVHRSQRDPLI-NDPSASKFVLLSSKPAVDDY-------DSDDSDLPDLVPQSATAPPAAKAVRFGNVVAHDLVNELGMVNDGYDYSKHMKEMGQGHFYSAGGT---YDEG-AGLLNK-RVVLPDDVLASANEHDRMLDAITLTEDVMDEDLREAL------VNDEAFEE--------LTDDFMLQAAEDLPVEQGDGAAAGGADGFDYDAHIAKLMAAA 240
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BLAST of mRNA_S-dermatodea_contig8488.16653.1 vs. uniprot
Match: A0A484EID0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EID0_BRELC)

HSP 1 Score: 115 bits (287), Expect = 5.020e-25
Identity = 90/245 (36.73%), Postives = 129/245 (52.65%), Query Frame = 3 
Query:   60 TMGRKKKFIDKKESSTFHVVHRSQQDKAQEGEEEASEFVLIPSG----------------------------PSRDNKRAAEGKGKSDEASLR------EQRDHINALGLPNDGYDYEQHLKSMGGGTFVSKTGKVQHFAEGNAGARGGGRVTLPEEALPSEETLDRQLEAVTISEKVMDGDLRRALAAGLADVGEEGSEDDEGEGGNLLDDDFVLQAA----GAEDGEGFDFDAHVARLMEASA 680
            T GRKK+FIDKK +  +HVVHRSQ+D  +  + +AS+FVL+ S                             P++ + +      KSD    +      E  D ++  GLP DGY+Y QH+K MG G F S T +     E  + +R   +V LPE ALPS +  DR L+A+T++  VMD DLR AL      V +E  E+        LDD+FV+QAA      ED + FD++AH+A+LM+A++
Sbjct:   25 TQGRKKQFIDKKTAQHYHVVHRSQRD-PKANDPDASKFVLLSSSQHVELHSEPDDEDSELDSDDDMPSLIDTPAKTSNKLKVKLRKSDFPVRKVCFGGVEAEDLVDENGLPRDGYNYSQHMKEMGQGKFYSATSRFDAGEEARSLSR---KVDLPEGALPSIDEQDRMLDAITLTTNVMDEDLREAL------VNDEAFEE--------LDDNFVIQAAEENVDQEDVDDFDYEAHIAKLMDAAS 251
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8488.16653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC8_ECTSI8.400e-11870.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0XBG0_9STRA3.140e-3141.59Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S0XBI8_9STRA1.380e-3041.59Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A836CIF2_9STRA1.170e-2737.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6A4EL32_9STRA4.440e-2738.37Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A3F2RYW0_9STRA7.250e-2637.96Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
H3GXQ9_PHYRM7.700e-2639.34Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
W4FC43_9STRA3.470e-2541.06Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FCN5_9STRA4.230e-2541.06Uncharacterized protein n=13 Tax=Aphanomyces astac... [more]
A0A484EID0_BRELC5.020e-2536.73Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8488contigS-dermatodea_contig8488:3356..8767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.9
Seed ortholog evalue5.3e-100
Seed eggNOG ortholog2880.D8LLC8
Preferred nameLTV1
KEGG koko:K14798,ko:K14811
GOsGO:0000054,GO:0000056,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009987,GO:0010008,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0022402,GO:0022613,GO:0022626,GO:0022627,GO:0030684,GO:0030688,GO:0031090,GO:0031410,GO:0031503,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0032535,GO:0032991,GO:0033036,GO:0033750,GO:0034448,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034660,GO:0042023,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044786,GO:0045184,GO:0045793,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090066,GO:0090304,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901360,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal small subunit export from nucleus
EggNOG OGsKOG2637@1,KOG2637@2759
EC3.6.4.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons6
Model size932
Cds size870
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925346.3334181-UTR-S-dermatodea_contig8488:3355..34171622925346.3334181-UTR-S-dermatodea_contig8488:3355..3417Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8488 3356..3417 +
1694079871.3064814-UTR-S-dermatodea_contig8488:3355..34171694079871.3064814-UTR-S-dermatodea_contig8488:3355..3417Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8488 3356..3417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925346.3477855-CDS-S-dermatodea_contig8488:3417..34201622925346.3477855-CDS-S-dermatodea_contig8488:3417..3420Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8488 3418..3420 +
1694079871.3203526-CDS-S-dermatodea_contig8488:3417..34201694079871.3203526-CDS-S-dermatodea_contig8488:3417..3420Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8488 3418..3420 +
1622925346.3589504-CDS-S-dermatodea_contig8488:3903..40291622925346.3589504-CDS-S-dermatodea_contig8488:3903..4029Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8488 3904..4029 +
1694079871.3311126-CDS-S-dermatodea_contig8488:3903..40291694079871.3311126-CDS-S-dermatodea_contig8488:3903..4029Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8488 3904..4029 +
1622925346.3716946-CDS-S-dermatodea_contig8488:5667..58061622925346.3716946-CDS-S-dermatodea_contig8488:5667..5806Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8488 5668..5806 +
1694079871.3428905-CDS-S-dermatodea_contig8488:5667..58061694079871.3428905-CDS-S-dermatodea_contig8488:5667..5806Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8488 5668..5806 +
1622925346.382966-CDS-S-dermatodea_contig8488:6540..66961622925346.382966-CDS-S-dermatodea_contig8488:6540..6696Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8488 6541..6696 +
1694079871.3517876-CDS-S-dermatodea_contig8488:6540..66961694079871.3517876-CDS-S-dermatodea_contig8488:6540..6696Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8488 6541..6696 +
1622925346.393312-CDS-S-dermatodea_contig8488:8057..81971622925346.393312-CDS-S-dermatodea_contig8488:8057..8197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8488 8058..8197 +
1694079871.3619447-CDS-S-dermatodea_contig8488:8057..81971694079871.3619447-CDS-S-dermatodea_contig8488:8057..8197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8488 8058..8197 +
1622925346.4039998-CDS-S-dermatodea_contig8488:8461..87671622925346.4039998-CDS-S-dermatodea_contig8488:8461..8767Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8488 8462..8767 +
1694079871.3709567-CDS-S-dermatodea_contig8488:8461..87671694079871.3709567-CDS-S-dermatodea_contig8488:8461..8767Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8488 8462..8767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8488.16653.1prot_S-dermatodea_contig8488.16653.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8488 3418..8767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8488.16653.1

>prot_S-dermatodea_contig8488.16653.1 ID=prot_S-dermatodea_contig8488.16653.1|Name=mRNA_S-dermatodea_contig8488.16653.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=290bp
MGRKKKFIDKKESSTFHVVHRSQQDKAQEGEEEASEFVLIPSGPSRDNKR
AAEGKGKSDEASLREQRDHINALGLPNDGYDYEQHLKSMGGGTFVSKTGK
VQHFAEGNAGARGGGRVTLPEEALPSEETLDRQLEAVTISEKVMDGDLRR
ALAAGLADVGEEGSEDDEGEGGNLLDDDFVLQAAGAEDGEGFDFDAHVAR
LMEASAHETGLRQRTAADDLQTKGLQRLRRDGDEESASESEADSDAGSDA
SGEFDETLLEGLDLGGEGASRAAAEGGSDERAVLDAQFEA
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mRNA from alignment at S-dermatodea_contig8488:3356..8767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8488.16653.1 ID=mRNA_S-dermatodea_contig8488.16653.1|Name=mRNA_S-dermatodea_contig8488.16653.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5412bp|location=Sequence derived from alignment at S-dermatodea_contig8488:3356..8767+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGAGTATCGCAGGCCCCCTCGCTTCAGCAGCTACATCGACACCTCCAC
CAACAACAAACCATGGTGCGTGACTCCGTGCTTAAGAGAGTATGTGGCGT
GGGTGGTACAGGAGAGGGTTGAATACCAGCGAATGCAGGACTTTGTAAAG
TGAAAAAAATATGACCCGGTGCCCATTGTGACCTATATGTTCTCATGGCC
AGCGCACGGGCTCCCTCGTGGTGACCTGGTGCGATGCCCACCGACTGCTT
AATCGTGGCACGCGATGCTATGGCCAGCCGCTCGGTTCTCCCAGTAGTCG
TGGTGTTCAGCGAGCTTGCCTCTGGTGCCTTGCTGGTGCTAGGTGGCCTG
TGTGGGTGTGGACATATTTGAACACTGCGTGGCCACTCCTATCCGTAAGG
CATCTATCTCTCAGTCCCTTGGTGTGGTGTTCCGCCGCACATTGGATTGG
AGTTTGGAGGCAAAGTGACCAGTCAGCAGTCCGTTTGTGAGGCATCAGCT
TGCGCCTCGCGCGCTTCCCTTGCGCGACTATTGCTGTCTGTACCTCAGGG
GCGCAAGAAGAAGTTCATCGACAAGAAGGAGTCTTCGACGTTCCACGTGG
TGCACCGGTCGCAGCAAGACAAGGCGCAAGAGGGCGAGGAGGAGGCGTCC
GAGTTTGTGCTCATCCCATCGGGGGTGAGAAAGCAAGATGTGTTGTACAA
ACGTAGCATTTATAGTATTACTGCTGTAGGTACTACTTAGAGTTACAAGC
TTAGCGGCTACGCCCGTGAGGTGAGCGACCGCACTAAAAGTAAAAATTAC
AAAATCGTATAGGAGTTTAGTACACGAGATCAGCCTCATGGCGTCCTCAC
AAATTCGTGTGACAGAATCGTTCGCTAAATCGCTATTAAAAATGGATCCT
TATTGTATTTAGTATTAAGTAGGTAGCCACGGCTACGCCAGTGAGGTGTG
TGCGTTGGCAGAACGATATGCCGGTCGACCGTGGCCGACCGCGGCCGAGG
CCGACCGCGGCCGACTCCGGCCGACCACGGCCGCCGCGGTCGTTGGGCTT
CAGTTGAATTGGGACGTCTCACTTGGAAAATGCGACTCTCTAAATCGCTA
TGAAAATCCTATTAAAAAATGGTTAACTCTTGTATAAATTAATAAGATTA
ATAAGACTAAACTGTAGTATAAGTATCACCTCTCCCTGCCTTCCACGACC
ATGGTAGATGCACTTCTGCGCGTAGCGTAGCGGCAGCCGTCACCCCAGGG
TTTTAAGGCTAAGGCTAAGGTTTGCAACGTGTCACAAATCTGGTTTAGTG
CTTTGACTGCATCAGTTAGTACTGTACAGTATGCAAGTGTTGACAGCTTA
TTCCTCCACATTCAAACCTCTAGGCTCTAGAGCTGCTATTATATACCAGG
TAACATGCAAGTATCATACTGCAGCTGCTATTATATACCAGGTAACATGC
AAGTATCATACTGCAGTCAGCTGTACAAGTAGAGGCATTGTAGTTGTACG
TCATGATACTACAGTACCATCGGAGCAAATTCGAGTAATTATTCATAGAG
AAAAATACGTAAAAGAGTGCAACGGCAACTCATAGGGACAGGACTTGGGT
AGACTTTGCTGTACTTGTACACAAAACTTAGATGATTTCACTGGCGGCCC
GAAAGAAAACATGCTTAATACTTACCTGGTACAGAACATTGCTCAGGCGA
CTCCCCAAGTACAAGCGAGGGTACTGGAAGTTTTTCTGCGCTATTAGTAG
CTCACAGGACAGAGCTCGAAAATATCTGGCAGTATGATAGGCCTTGAGAT
GGCGCGAATGTCGACCGAGCAGAAAGCTCATTTGACGAAATCACTGCACA
ACTTTTAATAGTCACAGTCTTTGCTGTTGTTGCACAGCAGTAGTAGTGTC
GATCATCAGAGAGCCACATCGAGACGATGCGAAAGTTAAAGCTTCTTTCT
TTTTCAGCTGAATCTATTTATGTGTGTCAGCCCGAGCGAGGCCCAAGCCC
CTTGTCGGCAAGTTCTTAGACCACTCTGTTTTAATAATTAATTTCGGTAT
TGATGTCTGTACACACACACAGGTATTTACTGTACAGCTGCAGGCCGTGT
TATACTGTACGCCATTTCATGGGCAACCACAACAGTATTATTAATATAAT
AGTACGAGTTTGTCATTATTGTATTTTGAGTTCTCCGGGTTTGCTCGCGG
GATAACTGGCTCCTGACTGAACCTGTGTCTCCGCATTCCTCGGCCCTGAC
CGACCCTGCGCTCAACTCGATCCCCGCTAACGATGGGGCCCTTCCCGCAT
TCCACGGGACAGCCATCGAGAGACAACAAGAGGGCCGCAGAGGGCAAGGG
TAAGAGCGATGAGGCGTCGCTGAGAGAGCAGCGCGATCACATCAACGCGC
TGGGCCTACCCAACGATGGGTACGACTACGAGCAGCACCTCAAGTCTATG
GGTGAGAGCTTGAAAAGTAAGGTACTTGGGCAAGAGTGGAGGCGTTATTT
GTTCTGTTATATTGTATTGTAGTGTGTTGCATGTCGTGCGTCGGTGCGCA
TCTGTGCCGTGTGCTCGACGTCTGAGATCGCCGCGGCGGTTTGTGGCCGA
TTAGGCTTTGCTTCGGCCTGCGGCAGGGCTGGCCACCTCGCGGCGAGCAC
GCTCTCCTACCCCGTAGCCGCAACCATAGGACACACAAGCACTTGCTTTT
CGGGTTCCTCTGGAATCTACTATTCAATAGAGTGCCCGTGAGTTGGGGAT
ACACAGGTGGACTACTACTACGAGCAAATAGGTTTTTGTTTTTATGTAGC
CATGGCTAGGCTACGCCCGTGAGGTGATGAAACGGTTGTTTGGCGCTCAA
CACAAACATCACGTGGGTTGGCATCACTTTTTCCTATGCTATTCCGGTGA
CACCATATCGTTATCTAAAATCGCTATTAGTATTTAAAATCGGTCAAAGC
GCGATTAATTAATTAATATACTACAGTATAATAGTATACATTATACAGCG
GTACTCGTAGTGACGATATTGGGCGCTAAAACGCATGGTATACAATCTAT
ATAGTATATGGTATATATGGTATATGTGGTATATATGGTATATATGGTTT
ATACTGTTTGTACTACAGATTCAGTCCCAAAAGGGACTTCTATAATAAAT
TAAATCGCCTCTCTTTTGCCACCCGAACAACGCAGGCGGCGGCACGTTCG
TGTCCAAAACCGGCAAAGTCCAACACTTCGCAGAGGGAAACGCCGGGGCG
AGAGGAGGGGGAAGGGTAACCTTACCGGAAGAGGCGTTGCCTTCGGAGGA
GACGCTCGACAGACAGCTTGAGGCCGTGACTATCAGCGAAAGTGAGTTGA
GCGAGCGAGTTGGACTCACACAGGAGCACCTCCCTCGAGTTCCCCCCGAA
ACGTTTAAAGTTAAAACTATTCATATTTTTCGAAGTGAGTTTTTTTTTTT
TTGTCCCACCCCCGTGCACCGTATATCACACCGAACAGGTACAGACAGTA
CCCGAACCGCGCATACTATTATTAATAATACTGTTATTAATAATACTGTT
GTACACAACTGCTGTAGTACATACTGTTAGTGTTAACGTTAATCGTACAT
GAGGGCGGTGGAAAAGTGATAACCCTGCCGCCGCGAGTAGCTAGTACTAT
TATTAATATTATTAATAGTGATAATATAATGTAATAGAATGTAATAGCAT
GCAGGGGGTACGCGTGTGCGTGCACCCTCGCGCAGTGTACCCGAAGAAAC
GTTATTGATATTGATAATGGTATGATGTTTGATAAATGATATTGATATTG
ATATTGACGTTATTGATATTGATAATGATATTGATGTTGATATTGATATT
GATATTGATATTGATATTGATGTTGATACTTGTATTGATAATGATATTCC
AAGCAAAACGGATTCCGCGCCGAAAGGGTTGAAATAAAACATTATATTAC
TACAGTAGTTGAGCGAGCGTTGGGGTCCACACCTTTCCCCCGTTTTGTTC
CGTTTCGTTCGTTGCGCCGTCGCGATTATTTAGTATTTTAGTATTTTAGT
ATTTTTGCTTGTCACAATTGGTGTGGAACCATATATCCCGATCGTGATTG
AGCCTCAGACGAAGAAAAGTCAGAGGGAGAGGGGGTGCGCGTGGATTGAA
ATGCATGTAATCGTTATGAACACTTACATTTTTGCAAAGCTGTTCACATG
TCCGGCTGCGACGAAGACAGTACCATACCAGAACCGGCCTTATTACTCAC
AGCAGTACCGGTCTTGATAAGACAGCACCCTTCCAGAACCACCTGAAATC
TCAGAGCAGTATCATGCCAACCGCCAACTGGTCGGCACATAAGTAAAAAA
CATCACGAGAGAGCAAGAGAGTATACTATTAATAGGACCCCAACCAGCGC
CGACCGGAAATGTCATTGTAGTATTATTAGGACATACCGCCAACCAATTG
GCACATGAAAACATAACATTCCACAAAATTATTAATATTATCGGTATACC
TTATACCGCGAACGAACCGTTTATGGCGCTGGTCATGTGAAAATACTCGC
GTCATCGCCGGTCATGTGAAAAACCGTGTTGAATTGTTTTTTAGACGGCG
CTGGTCATGTGAACATATATACTCGAAGTATGTGTGTAATCGCCGGTCCT
GTGAAGAGCCCTGCTGAACGTGTGTGTGTGTGTTTTTTTTTGTGCTGCGC
AGAGGTAATGGACGGCGACCTTAGGAGGGCTCTCGCCGCTGGACTGGCTG
ACGTTGGAGAAGAGGGCTCAGAGGACGATGAAGGAGAGGGTGGCAACCTC
CTCGATGACGACTTCGTGCTGCAGGCTGCGGGGGCGGAAGATGTGAGGTT
TGGGACGGGGTGCGGAAGTTGAAGGCTTCGGTGTTTATACCACAATGTGA
TTTATTTTTGTAAAGAAATCGAAGACAGAAAGTGTAGATTCCTTGAGCTC
ATCGAGGCAGGATGTATGCTTAATTGTATCGTAATGTTTTTTTTTTTTAT
CTTGACTATAATATAGTAAGTTAGTGTGATAAAAGAAACACACAAACACA
CACACGAGCCATTTTCATCGTGTTTTTGTTTTGCTTTTCTGATGGTACTG
CCGCAGGGCGAAGGCTTCGACTTCGATGCCCACGTCGCTCGCCTCATGGA
GGCCAGCGCGCATGAGACCGGCCTCCGCCAGCGAACCGCAGCCGACGATC
TCCAGACGAAGGGCCTCCAACGATTGCGTCGTGATGGAGACGAGGAATCA
GCGTCAGAATCTGAAGCCGATTCGGATGCAGGATCAGACGCGAGCGGGGA
GTTCGACGAGACCTTGTTGGAAGGGCTGGACTTAGGCGGGGAGGGGGCAA
GCCGGGCGGCTGCGGAGGGAGGGAGCGACGAGCGGGCGGTTCTGGATGCC
CAGTTTGAGGCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8488:3356..8767+

>mRNA_S-dermatodea_contig8488.16653.1 ID=mRNA_S-dermatodea_contig8488.16653.1|Name=mRNA_S-dermatodea_contig8488.16653.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at S-dermatodea_contig8488:3356..8767+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGGGCGCAAGAAGAAGTTCATCGACAAGAAGGAGTCTTCGACGTT
CCACGTGGTGCACCGGTCGCAGCAAGACAAGGCGCAAGAGGGCGAGGAGG
AGGCGTCCGAGTTTGTGCTCATCCCATCGGGGGGGCGCAAGAAGAAGTTC
ATCGACAAGAAGGAGTCTTCGACGTTCCACGTGGTGCACCGGTCGCAGCA
AGACAAGGCGCAAGAGGGCGAGGAGGAGGCGTCCGAGTTTGTGCTCATCC
CATCGGGGCCATCGAGAGACAACAAGAGGGCCGCAGAGGGCAAGGGTAAG
AGCGATGAGGCGTCGCTGAGAGAGCAGCGCGATCACATCAACGCGCTGGG
CCTACCCAACGATGGGTACGACTACGAGCAGCACCTCAAGTCTATGGCCA
TCGAGAGACAACAAGAGGGCCGCAGAGGGCAAGGGTAAGAGCGATGAGGC
GTCGCTGAGAGAGCAGCGCGATCACATCAACGCGCTGGGCCTACCCAACG
ATGGGTACGACTACGAGCAGCACCTCAAGTCTATGGGCGGCGGCACGTTC
GTGTCCAAAACCGGCAAAGTCCAACACTTCGCAGAGGGAAACGCCGGGGC
GAGAGGAGGGGGAAGGGTAACCTTACCGGAAGAGGCGTTGCCTTCGGAGG
AGACGCTCGACAGACAGCTTGAGGCCGTGACTATCAGCGAAAGCGGCGGC
ACGTTCGTGTCCAAAACCGGCAAAGTCCAACACTTCGCAGAGGGAAACGC
CGGGGCGAGAGGAGGGGGAAGGGTAACCTTACCGGAAGAGGCGTTGCCTT
CGGAGGAGACGCTCGACAGACAGCTTGAGGCCGTGACTATCAGCGAAAAG
GTAATGGACGGCGACCTTAGGAGGGCTCTCGCCGCTGGACTGGCTGACGT
TGGAGAAGAGGGCTCAGAGGACGATGAAGGAGAGGGTGGCAACCTCCTCG
ATGACGACTTCGTGCTGCAGGCTGCGGGGGCGGAAGATAGGTAATGGACG
GCGACCTTAGGAGGGCTCTCGCCGCTGGACTGGCTGACGTTGGAGAAGAG
GGCTCAGAGGACGATGAAGGAGAGGGTGGCAACCTCCTCGATGACGACTT
CGTGCTGCAGGCTGCGGGGGCGGAAGATGGCGAAGGCTTCGACTTCGATG
CCCACGTCGCTCGCCTCATGGAGGCCAGCGCGCATGAGACCGGCCTCCGC
CAGCGAACCGCAGCCGACGATCTCCAGACGAAGGGCCTCCAACGATTGCG
TCGTGATGGAGACGAGGAATCAGCGTCAGAATCTGAAGCCGATTCGGATG
CAGGATCAGACGCGAGCGGGGAGTTCGACGAGACCTTGTTGGAAGGGCTG
GACTTAGGCGGGGAGGGGGCAAGCCGGGCGGCTGCGGAGGGAGGGAGCGA
CGAGCGGGCGGTTCTGGATGCCCAGTTTGAGGCTGGCGAAGGCTTCGACT
TCGATGCCCACGTCGCTCGCCTCATGGAGGCCAGCGCGCATGAGACCGGC
CTCCGCCAGCGAACCGCAGCCGACGATCTCCAGACGAAGGGCCTCCAACG
ATTGCGTCGTGATGGAGACGAGGAATCAGCGTCAGAATCTGAAGCCGATT
CGGATGCAGGATCAGACGCGAGCGGGGAGTTCGACGAGACCTTGTTGGAA
GGGCTGGACTTAGGCGGGGAGGGGGCAAGCCGGGCGGCTGCGGAGGGAGG
GAGCGACGAGCGGGCGGTTCTGGATGCCCAGTTTGAGGCT
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