mRNA_S-dermatodea_contig8486.16651.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8486.16651.1
Unique NamemRNA_S-dermatodea_contig8486.16651.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8486.16651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8486contigS-dermatodea_contig8486:7901..8680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size781
Cds size780
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925346.1767244-CDS-S-dermatodea_contig8486:7900..86801622925346.1767244-CDS-S-dermatodea_contig8486:7900..8680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8486 7901..8680 +
1694079871.183354-CDS-S-dermatodea_contig8486:7900..86801694079871.183354-CDS-S-dermatodea_contig8486:7900..8680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8486 7901..8680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8486.16651.1prot_S-dermatodea_contig8486.16651.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8486 7901..8680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8486.16651.1

>prot_S-dermatodea_contig8486.16651.1 ID=prot_S-dermatodea_contig8486.16651.1|Name=mRNA_S-dermatodea_contig8486.16651.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=260bp
MATPSPPPAFSTSAPASSLLSAAIALGVVGEALSTAPCLPPSECRSGLSG
MWSTCRKNFPASPTTPSPFPSSFRTPPSPLASVVGVSAPAASPSRSPSRS
SSPPPSPSSLPSSPSRASRSSSPPPSPSPRTPPSPPSRTSPSPLTSAFSL
SSAMSTSTVAAAAATSSPSAETASPAAVPSCAASISPASSPPASITPSPT
SGFPSPTAAISPSKESMASTTVGTSLLPSSEDAAPGLSGAPSRAPAPNTA
GCRIAVSRIC
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mRNA from alignment at S-dermatodea_contig8486:7901..8680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8486.16651.1 ID=mRNA_S-dermatodea_contig8486.16651.1|Name=mRNA_S-dermatodea_contig8486.16651.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=780bp|location=Sequence derived from alignment at S-dermatodea_contig8486:7901..8680+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTACGCCATCGCCCCCCCCCGCCTTCTCGACCTCTGCGCCCGCATC
CTCCTTGCTGTCCGCCGCAATCGCGTTAGGAGTCGTGGGGGAAGCACTGT
CCACGGCCCCCTGCTTGCCCCCCTCGGAGTGTCGCTCGGGATTGTCGGGG
ATGTGGAGCACGTGCCGCAAGAACTTCCCGGCGAGCCCGACCACCCCTTC
CCCTTTCCCCTCCTCCTTTCGAACTCCCCCTTCGCCTTTGGCTTCAGTCG
TTGGCGTTTCGGCCCCGGCAGCGTCACCATCACGATCGCCATCGCGTTCA
TCATCACCACCACCATCACCGTCCTCCTTGCCCTCATCGCCCTCCCGGGC
GTCGAGGTCCTCTTCCCCTCCCCCTTCCCCTTCCCCGAGAACGCCTCCGT
CTCCACCATCGAGAACCTCTCCATCACCGCTAACCTCGGCGTTCTCCTTG
TCCTCCGCGATGTCGACATCGACAGTAGCGGCGGCGGCGGCGACCTCATC
ACCATCAGCGGAAACGGCATCACCAGCGGCAGTTCCATCATGCGCAGCGT
CGATCTCACCAGCATCATCACCACCAGCGTCGATTACTCCGTCACCAACA
TCGGGGTTTCCATCGCCGACAGCGGCGATTTCGCCATCGAAAGAGTCGAT
GGCGTCGACGACAGTGGGAACGTCGCTCTTGCCATCCTCCGAGGACGCCG
CCCCGGGACTCTCGGGAGCTCCTTCGAGGGCGCCAGCGCCGAACACCGCC
GGGTGTCGCATTGCTGTTTCGCGGATCTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8486:7901..8680+

>mRNA_S-dermatodea_contig8486.16651.1 ID=mRNA_S-dermatodea_contig8486.16651.1|Name=mRNA_S-dermatodea_contig8486.16651.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at S-dermatodea_contig8486:7901..8680+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTACGCCATCGCCCCCCCCCGCCTTCTCGACCTCTGCGCCCGCATC
CTCCTTGCTGTCCGCCGCAATCGCGTTAGGAGTCGTGGGGGAAGCACTGT
CCACGGCCCCCTGCTTGCCCCCCTCGGAGTGTCGCTCGGGATTGTCGGGG
ATGTGGAGCACGTGCCGCAAGAACTTCCCGGCGAGCCCGACCACCCCTTC
CCCTTTCCCCTCCTCCTTTCGAACTCCCCCTTCGCCTTTGGCTTCAGTCG
TTGGCGTTTCGGCCCCGGCAGCGTCACCATCACGATCGCCATCGCGTTCA
TCATCACCACCACCATCACCGTCCTCCTTGCCCTCATCGCCCTCCCGGGC
GTCGAGGTCCTCTTCCCCTCCCCCTTCCCCTTCCCCGAGAACGCCTCCGT
CTCCACCATCGAGAACCTCTCCATCACCGCTAACCTCGGCGTTCTCCTTG
TCCTCCGCGATGTCGACATCGACAGTAGCGGCGGCGGCGGCGACCTCATC
ACCATCAGCGGAAACGGCATCACCAGCGGCAGTTCCATCATGCGCAGCGT
CGATCTCACCAGCATCATCACCACCAGCGTCGATTACTCCGTCACCAACA
TCGGGGTTTCCATCGCCGACAGCGGCGATTTCGCCATCGAAAGAGTCGAT
GGCGTCGACGACAGTGGGAACGTCGCTCTTGCCATCCTCCGAGGACGCCG
CCCCGGGACTCTCGGGAGCTCCTTCGAGGGCGCCAGCGCCGAACACCGCC
GGGTGTCGCATTGCTGTTTCGCGGATCTGCATGGCTACGCCATCGCCCCC
CCCCGCCTTCTCGACCTCTGCGCCCGCATCCTCCTTGCTGTCCGCCGCAA
TCGCGTTAGGAGTCGTGGGGGAAGCACTGTCCACGGCCCCCTGCTTGCCC
CCCTCGGAGTGTCGCTCGGGATTGTCGGGGATGTGGAGCACGTGCCGCAA
GAACTTCCCGGCGAGCCCGACCACCCCTTCCCCTTTCCCCTCCTCCTTTC
GAACTCCCCCTTCGCCTTTGGCTTCAGTCGTTGGCGTTTCGGCCCCGGCA
GCGTCACCATCACGATCGCCATCGCGTTCATCATCACCACCACCATCACC
GTCCTCCTTGCCCTCATCGCCCTCCCGGGCGTCGAGGTCCTCTTCCCCTC
CCCCTTCCCCTTCCCCGAGAACGCCTCCGTCTCCACCATCGAGAACCTCT
CCATCACCGCTAACCTCGGCGTTCTCCTTGTCCTCCGCGATGTCGACATC
GACAGTAGCGGCGGCGGCGGCGACCTCATCACCATCAGCGGAAACGGCAT
CACCAGCGGCAGTTCCATCATGCGCAGCGTCGATCTCACCAGCATCATCA
CCACCAGCGTCGATTACTCCGTCACCAACATCGGGGTTTCCATCGCCGAC
AGCGGCGATTTCGCCATCGAAAGAGTCGATGGCGTCGACGACAGTGGGAA
CGTCGCTCTTGCCATCCTCCGAGGACGCCGCCCCGGGACTCTCGGGAGCT
CCTTCGAGGGCGCCAGCGCCGAACACCGCCGGGTGTCGCATTGCTGTTTC
GCGGATCTGC
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