mRNA_S-dermatodea_contig8482.16648.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8482.16648.1
Unique NamemRNA_S-dermatodea_contig8482.16648.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8482.16648.1 vs. uniprot
Match: D8LRH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH5_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 6.940e-30
Identity = 115/262 (43.89%), Postives = 146/262 (55.73%), Query Frame = 1 
Query:  235 KREDFEKMKELSAHMDNIVQRLSNFFPLD--EDDERVSTPLPQPVPELPPLPHPERLTEVRNASISARVMTMDRAXXXXXXXXXXXXSVASGLHFEDEFSGSADA--SQGEDAEHMEHPILG-RGMKGAMKTHGGVTGIVGRRQDGVEKFAGNRKNP-RGEATAQRTRARTGSLSGDLRNTNA-SPGLGGQRPTEEGRRRYNGPGDASDASCDADAFHEQLIWDELRDSL---AGRDRGSPEKRHVRDTVEKAKRDLDGEEQ 990
            KREDFEKMKELS HMDN+VQRL+ +FPLD  E + +     P   PELPPLP P      R+  +SARV+TM   XXXXXXXXXXX SVASGLHF+DE SGS  +    GED +H E    G RG +G  +          RR    ++ AG+RK+   G   A+  +  T S S   R+ +    GLG +  +  G  R   P   + A+   +  HE+L+WDELR++L   AG D   P   H    VEKA+ D   EEQ
Sbjct:   92 KREDFEKMKELSTHMDNVVQRLATYFPLDGTEGEPKTDVVPPSAAPELPPLPLPSP-DNARDRYVSARVLTMXXXXXXXXXXXXXXTSVASGLHFDDELSGSTASYGRHGEDEQHAERRGAGGRGQRGTSRRQSQSRADSDRRGMDTDEPAGSRKHEAEGPDAAEHRKGTTSSWSRKDRSASVVDKGLGLKLESSGGEMRSRPPPGRAGANLGFEDSHERLLWDELRETLEGVAGSDAVPPAWGHGA-AVEKARADRAHEEQ 351
[Close]
BLAST of mRNA_S-dermatodea_contig8482.16648.1 vs. uniprot
Match: A0A6H5KZ75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ75_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 9.850e-27
Identity = 120/283 (42.40%), Postives = 158/283 (55.83%), Query Frame = 1 
Query:  235 KREDFEKMKELSAHMDNIVQRLSNFFPLDEDDERVSTPL--PQPVPELPPLPHPERLTEVRNASISARVMTMDRAXXXXXXXXXXXXSVASGLHFEDEFSGS--ADASQGEDAEHMEHPILG-RGMKGAMKTHGGVTGIVGRRQDGVEKFAGNRKNP-RGEATAQRTRARTGSLSGDLRNTNAS---PGLGGQRPTEEGRRRYNGPGDASDASCDADAFH----------EQLIWDELRDSL---AGRDRGSPEKRHVRDTVEKAKRDLDGEEQRRRLIEEAI 1017
            KREDFEKMKELSAHMDN+VQRL+ +FP D+ +   +T +  P   PELPPLP P      R   +SARV+TMDRAXXXXXXXXXXXXSVASGLHF+DE S S  +++  GED +  +    G RG +G  +          RR    ++  G+RK+   G  TA+  +  T + S   ++T+AS    GLG +  +  G RR   P   + A+   +  H          E+L+WDELR+SL   AG D   P   H     EKA+ +   E     LI+EAI
Sbjct:   92 KREDFEKMKELSAHMDNVVQRLATYFPPDDTEGEPNTDVVPPSAAPELPPLPLPPP-DNARGRYVSARVLTMDRAXXXXXXXXXXXXSVASGLHFDDELSASTASNSRHGEDEQRAKRRGSGGRGQRGTSRRQSRADS--NRRGMDTDEPVGSRKHEAEGPDTAEHRKRTTSNWS--RKDTSASVVGKGLGLKLESSGGGRRSRSPPGRAGANLGFEDSHXXXXXXXXXXERLLWDELRESLEGVAGSDAVPPAWGHGA-AAEKARAERAREXXXXXLIDEAI 368
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8482.16648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRH5_ECTSI6.940e-3043.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ75_9PHAE9.850e-2742.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8482contigS-dermatodea_contig8482:1127..3524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_004540.1
Exons3
Model size1089
Cds size1089
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8482.16648.1prot_S-dermatodea_contig8482.16648.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8482 1127..3524 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.9890873-CDS-S-dermatodea_contig8482:1126..16861622925345.9890873-CDS-S-dermatodea_contig8482:1126..1686Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8482 1127..1686 -
1694079871.0506098-CDS-S-dermatodea_contig8482:1126..16861694079871.0506098-CDS-S-dermatodea_contig8482:1126..1686Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8482 1127..1686 -
1622925346.0026164-CDS-S-dermatodea_contig8482:2386..27021622925346.0026164-CDS-S-dermatodea_contig8482:2386..2702Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8482 2387..2702 -
1694079871.0656521-CDS-S-dermatodea_contig8482:2386..27021694079871.0656521-CDS-S-dermatodea_contig8482:2386..2702Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8482 2387..2702 -
1622925346.0142276-CDS-S-dermatodea_contig8482:3311..35241622925346.0142276-CDS-S-dermatodea_contig8482:3311..3524Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8482 3312..3524 -
1694079871.07667-CDS-S-dermatodea_contig8482:3311..35241694079871.07667-CDS-S-dermatodea_contig8482:3311..3524Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8482 3312..3524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8482.16648.1

>prot_S-dermatodea_contig8482.16648.1 ID=prot_S-dermatodea_contig8482.16648.1|Name=mRNA_S-dermatodea_contig8482.16648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=363bp
SSDSSQDNTSEDGTETSGSEESGSDSGDDSSGGSDGSNSTSSGEGEDDSS
SGGSDEESENGEDEESEEDDEEEKKQVSKREDFEKMKELSAHMDNIVQRL
SNFFPLDEDDERVSTPLPQPVPELPPLPHPERLTEVRNASISARVMTMDR
AVSARRLTTDRAVSVASGLHFEDEFSGSADASQGEDAEHMEHPILGRGMK
GAMKTHGGVTGIVGRRQDGVEKFAGNRKNPRGEATAQRTRARTGSLSGDL
RNTNASPGLGGQRPTEEGRRRYNGPGDASDASCDADAFHEQLIWDELRDS
LAGRDRGSPEKRHVRDTVEKAKRDLDGEEQRRRLIEEAIAILLESSSDEE
GVDEEGVDGGGR*
back to top

mRNA from alignment at S-dermatodea_contig8482:1127..3524-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8482.16648.1 ID=mRNA_S-dermatodea_contig8482.16648.1|Name=mRNA_S-dermatodea_contig8482.16648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2398bp|location=Sequence derived from alignment at S-dermatodea_contig8482:1127..3524- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTCGGATAGCTCGCAAGATAACACCTCCGAGGACGGCACGGAGACATC
GGGGTCAGAGGAGAGTGGATCAGACAGTGGCGACGATTCCTCAGGCGGCA
GCGATGGCAGCAACAGCACCAGTTCCGGAGAGGGCGAGGATGACAGCTCT
TCTGGTGGAAGCGATGAGGAGAGTGAAAACGGCGAAGACGAGGAATCCGA
AGAAGACGATGAGGTCAGTCAGTATAATAGTAGTTGCTGTCCATGCCGCT
AAATTGATAAATGTAGTATATGAAATGTGCGGGCGGCGGCGTGCCACTAA
AATACAAGCACCTCTCCCGCCCCCACATGATAATCGTAGCCTTTTCGACG
TACTGAAGTCGGGAGACTCAAGGTTGCAGTGGCAGCTTTTACGTTCAAGG
TCGAGCGGCGACACCACAATCATGGATCGAAAGGGCTAAAGACGGATTCG
CGGGAAACACAAGGAGACAGCCTTGTACTTTCTTCTGATACCGCAGGCGT
ATCAACACTGCAGCGTACTGCCACATCAGTCAGCACGCAACAGTCTACAT
CGCGAGACAACACTTGCAGATAGAGCCTACATCACATCACTAGATCCATT
TCAAGCTCAATCAAGCATAAGAAGAACTGCGTCGTAACGTCCGCTAAATA
TCTGTACGAATACTTCCCACGATAAATTTCAGCATTGTTAGGGCGTGAGG
CGACGCACACTCATTCCAGAAACGTTTCCAAGAGTAATTTGTACAGCCAC
CTCATGTACCGTTGACATCCTCTACGCGGGCTTTTGTCCACTACCAATTA
TCCGACGACCGCGTCATGCCAGGAGGAGAAGAAGCAGGTCAGCAAGCGAG
AAGACTTCGAGAAGATGAAGGAGCTTTCGGCTCACATGGATAACATCGTG
CAGCGCTTGTCCAACTTCTTTCCCTTGGACGAGGATGATGAACGAGTCTC
CACTCCTCTACCTCAGCCGGTGCCAGAGCTACCTCCACTTCCCCACCCGG
AGCGGTTGACAGAAGTCAGAAATGCATCGATATCTGCACGGGTGATGACA
ATGGACCGAGCGGTATCTGCCAGACGACTCACGACCGACCGTGCTGTCTC
CGTTGCCAGCGGCTTGCACTTTGAAGACGAGTTTTCCGGTAAGTGCTCGA
TTCAACTAGAGACTCAATTGCCCGTCCGTCGGGAAGCCTTTTCCACTTCA
CATGTATCATACATCTCCAACTAGACAGAAACACTGCTTGTACTCAGTTG
CAGGGGAAACCGACGTACGCCTTGTATTCCGCGGAAACGTTTTGTGGCGT
CTCCTCACTGGGTGCTAAAATCGCTACCAGGTAGCTAGTAATCGCACTTG
TGAGCGTGATAGAATTTGTGTACACCAGTCGCGTATTATTGTAATCAATC
AACTTTGACAGCAAAAATATGTGCCTTTTCAATACGATGCCCGCCTATGG
TTGAAACAGTATGAACGAGCAGCGTCGTTGGGGTACTTGGAGTGCCATGT
AGCAGCGGCATTCTTCGCCACAAAACGTGCGAAACCGCGCCGGTAAAAAT
GCAAAACCCTTGTCCTTGGCATCCATCGCACAGTATCCCTTAGAATCAAC
AAACCCAACCCAATCCCGAGCATGCTCACCAACACAATCATACCCTTGAC
TCCTCTTGTCGCCTCGACGATCTTCCTTCAAGCCCTCCGACCTCGACCCA
ACCAACCATCCGCAACCGAATGGGCCAAACACTTGAAGGCCCGCATCGCG
ACTTCGCTACGCTTACGTTTTTGCCGACGCTATGATACTATTAATAGCGC
ACTTACGTGTGCCCGGTTTCTCTTTCGCCTCGCCGCAGGTTCGGCAGATG
CTTCTCAAGGAGAGGATGCGGAGCACATGGAACACCCGATACTAGGGCGA
GGTATGAAGGGAGCGATGAAGACACACGGTGGTGTAACGGGAATAGTTGG
CAGGCGCCAGGACGGAGTTGAGAAATTCGCCGGCAACCGAAAGAACCCAA
GGGGGGAAGCAACCGCCCAAAGAACCCGGGCGAGAACAGGTTCGCTCTCA
GGCGATCTTAGAAATACCAACGCCAGTCCGGGTCTGGGGGGGCAAAGACC
CACGGAAGAAGGCAGGAGGAGATATAATGGTCCAGGAGATGCTTCAGACG
CTAGTTGCGATGCAGACGCCTTCCACGAGCAGCTGATATGGGATGAGCTT
CGCGATTCGCTAGCTGGAAGGGACCGAGGGTCGCCTGAGAAGCGGCATGT
TCGTGATACGGTAGAGAAAGCAAAGCGGGATTTAGATGGTGAGGAGCAGC
GGCGGAGGCTAATAGAGGAGGCGATAGCTATTCTTCTTGAAAGTAGTAGC
GACGAAGAAGGGGTCGACGAAGAAGGAGTGGACGGTGGAGGACGTTAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8482:1127..3524-

>mRNA_S-dermatodea_contig8482.16648.1 ID=mRNA_S-dermatodea_contig8482.16648.1|Name=mRNA_S-dermatodea_contig8482.16648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2178bp|location=Sequence derived from alignment at S-dermatodea_contig8482:1127..3524- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTCGGATAGCTCGCAAGATAACACCTCCGAGGACGGCACGGAGACATC
GGGGTCAGAGGAGAGTGGATCAGACAGTGGCGACGATTCCTCAGGCGGCA
GCGATGGCAGCAACAGCACCAGTTCCGGAGAGGGCGAGGATGACAGCTCT
TCTGGTGGAAGCGATGAGGAGAGTGAAAACGGCGAAGACGAGGAATCCGA
AGAAGACGATGAGAGTTCGGATAGCTCGCAAGATAACACCTCCGAGGACG
GCACGGAGACATCGGGGTCAGAGGAGAGTGGATCAGACAGTGGCGACGAT
TCCTCAGGCGGCAGCGATGGCAGCAACAGCACCAGTTCCGGAGAGGGCGA
GGATGACAGCTCTTCTGGTGGAAGCGATGAGGAGAGTGAAAACGGCGAAG
ACGAGGAATCCGAAGAAGACGATGAGGAGGAGAAGAAGCAGGTCAGCAAG
CGAGAAGACTTCGAGAAGATGAAGGAGCTTTCGGCTCACATGGATAACAT
CGTGCAGCGCTTGTCCAACTTCTTTCCCTTGGACGAGGATGATGAACGAG
TCTCCACTCCTCTACCTCAGCCGGTGCCAGAGCTACCTCCACTTCCCCAC
CCGGAGCGGTTGACAGAAGTCAGAAATGCATCGATATCTGCACGGGTGAT
GACAATGGACCGAGCGGTATCTGCCAGACGACTCACGACCGACCGTGCTG
TCTCCGTTGCCAGCGGCTTGCACTTTGAAGACGAGTTTTCCGGAGGAGAA
GAAGCAGGTCAGCAAGCGAGAAGACTTCGAGAAGATGAAGGAGCTTTCGG
CTCACATGGATAACATCGTGCAGCGCTTGTCCAACTTCTTTCCCTTGGAC
GAGGATGATGAACGAGTCTCCACTCCTCTACCTCAGCCGGTGCCAGAGCT
ACCTCCACTTCCCCACCCGGAGCGGTTGACAGAAGTCAGAAATGCATCGA
TATCTGCACGGGTGATGACAATGGACCGAGCGGTATCTGCCAGACGACTC
ACGACCGACCGTGCTGTCTCCGTTGCCAGCGGCTTGCACTTTGAAGACGA
GTTTTCCGGTTCGGCAGATGCTTCTCAAGGAGAGGATGCGGAGCACATGG
AACACCCGATACTAGGGCGAGGTATGAAGGGAGCGATGAAGACACACGGT
GGTGTAACGGGAATAGTTGGCAGGCGCCAGGACGGAGTTGAGAAATTCGC
CGGCAACCGAAAGAACCCAAGGGGGGAAGCAACCGCCCAAAGAACCCGGG
CGAGAACAGGTTCGCTCTCAGGCGATCTTAGAAATACCAACGCCAGTCCG
GGTCTGGGGGGGCAAAGACCCACGGAAGAAGGCAGGAGGAGATATAATGG
TCCAGGAGATGCTTCAGACGCTAGTTGCGATGCAGACGCCTTCCACGAGC
AGCTGATATGGGATGAGCTTCGCGATTCGCTAGCTGGAAGGGACCGAGGG
TCGCCTGAGAAGCGGCATGTTCGTGATACGGTAGAGAAAGCAAAGCGGGA
TTTAGATGGTGAGGAGCAGCGGCGGAGGCTAATAGAGGAGGCGATAGCTA
TTCTTCTTGAAAGTAGTAGCGACGAAGAAGGGGTCGACGAAGAAGGAGTG
GACGGTGGAGGACGTTAGGTTCGGCAGATGCTTCTCAAGGAGAGGATGCG
GAGCACATGGAACACCCGATACTAGGGCGAGGTATGAAGGGAGCGATGAA
GACACACGGTGGTGTAACGGGAATAGTTGGCAGGCGCCAGGACGGAGTTG
AGAAATTCGCCGGCAACCGAAAGAACCCAAGGGGGGAAGCAACCGCCCAA
AGAACCCGGGCGAGAACAGGTTCGCTCTCAGGCGATCTTAGAAATACCAA
CGCCAGTCCGGGTCTGGGGGGGCAAAGACCCACGGAAGAAGGCAGGAGGA
GATATAATGGTCCAGGAGATGCTTCAGACGCTAGTTGCGATGCAGACGCC
TTCCACGAGCAGCTGATATGGGATGAGCTTCGCGATTCGCTAGCTGGAAG
GGACCGAGGGTCGCCTGAGAAGCGGCATGTTCGTGATACGGTAGAGAAAG
CAAAGCGGGATTTAGATGGTGAGGAGCAGCGGCGGAGGCTAATAGAGGAG
GCGATAGCTATTCTTCTTGAAAGTAGTAGCGACGAAGAAGGGGTCGACGA
AGAAGGAGTGGACGGTGGAGGACGTTAG
back to top