mRNA_S-dermatodea_contig8476.16645.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8476.16645.1
Unique NamemRNA_S-dermatodea_contig8476.16645.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8476.16645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8476contigS-dermatodea_contig8476:1436..1976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.8548746-CDS-S-dermatodea_contig8476:1435..19751622925345.8548746-CDS-S-dermatodea_contig8476:1435..1975Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8476 1436..1975 +
1694079870.9612787-CDS-S-dermatodea_contig8476:1435..19751694079870.9612787-CDS-S-dermatodea_contig8476:1435..1975Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8476 1436..1975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8476.16645.1prot_S-dermatodea_contig8476.16645.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8476 1436..1975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8476.16645.1

>prot_S-dermatodea_contig8476.16645.1 ID=prot_S-dermatodea_contig8476.16645.1|Name=mRNA_S-dermatodea_contig8476.16645.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=180bp
FGRGKFSDSASEENSENFPTAESSSPPPNKRSAGAKKKPTRFSSRDPKIS
AASPNSPEKTSREKQQQRKGYYGQGGDYKSSSGFRGSAGRGGDARSGDTP
YASGSYDGDDEDSDEIIFSEFPSEEVEDDLVGDGDEWRYPADEDQRVGAS
KRTDRGSFGGQGVGGRGLVERSTEELHEKP
back to top

mRNA from alignment at S-dermatodea_contig8476:1436..1976+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8476.16645.1 ID=mRNA_S-dermatodea_contig8476.16645.1|Name=mRNA_S-dermatodea_contig8476.16645.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=541bp|location=Sequence derived from alignment at S-dermatodea_contig8476:1436..1976+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGGAAGAGGGAAATTTTCAGATTCCGCGTCGGAAGAAAATTCCGAGAA
TTTTCCCACCGCCGAGAGCTCCTCCCCGCCACCAAACAAACGGTCCGCTG
GCGCGAAGAAAAAACCCACCAGATTCTCCTCCCGCGATCCCAAAATCTCC
GCCGCATCTCCCAATTCTCCCGAGAAAACCTCCCGGGAGAAACAACAGCA
GCGTAAGGGCTACTACGGCCAGGGGGGAGACTATAAAAGCAGCTCTGGCT
TCCGCGGGAGCGCAGGCCGTGGTGGCGACGCAAGAAGTGGAGACACGCCT
TACGCCTCTGGTTCCTACGACGGCGACGATGAGGATAGCGACGAGATCAT
TTTCTCGGAATTTCCTAGCGAGGAGGTAGAGGATGATTTGGTGGGCGATG
GAGACGAGTGGAGATATCCCGCAGATGAGGATCAGCGGGTCGGCGCTTCT
AAGCGGACCGATCGTGGGAGTTTCGGTGGGCAGGGTGTGGGGGGGAGAGG
GCTTGTCGAGCGATCGACAGAGGAGTTGCATGAGAAGCCGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8476:1436..1976+

>mRNA_S-dermatodea_contig8476.16645.1 ID=mRNA_S-dermatodea_contig8476.16645.1|Name=mRNA_S-dermatodea_contig8476.16645.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at S-dermatodea_contig8476:1436..1976+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGGAAGAGGGAAATTTTCAGATTCCGCGTCGGAAGAAAATTCCGAGAA
TTTTCCCACCGCCGAGAGCTCCTCCCCGCCACCAAACAAACGGTCCGCTG
GCGCGAAGAAAAAACCCACCAGATTCTCCTCCCGCGATCCCAAAATCTCC
GCCGCATCTCCCAATTCTCCCGAGAAAACCTCCCGGGAGAAACAACAGCA
GCGTAAGGGCTACTACGGCCAGGGGGGAGACTATAAAAGCAGCTCTGGCT
TCCGCGGGAGCGCAGGCCGTGGTGGCGACGCAAGAAGTGGAGACACGCCT
TACGCCTCTGGTTCCTACGACGGCGACGATGAGGATAGCGACGAGATCAT
TTTCTCGGAATTTCCTAGCGAGGAGGTAGAGGATGATTTGGTGGGCGATG
GAGACGAGTGGAGATATCCCGCAGATGAGGATCAGCGGGTCGGCGCTTCT
AAGCGGACCGATCGTGGGAGTTTCGGTGGGCAGGGTGTGGGGGGGAGAGG
GCTTGTCGAGCGATCGACAGAGGAGTTGCATGAGAAGCCGTTCGGAAGAG
GGAAATTTTCAGATTCCGCGTCGGAAGAAAATTCCGAGAATTTTCCCACC
GCCGAGAGCTCCTCCCCGCCACCAAACAAACGGTCCGCTGGCGCGAAGAA
AAAACCCACCAGATTCTCCTCCCGCGATCCCAAAATCTCCGCCGCATCTC
CCAATTCTCCCGAGAAAACCTCCCGGGAGAAACAACAGCAGCGTAAGGGC
TACTACGGCCAGGGGGGAGACTATAAAAGCAGCTCTGGCTTCCGCGGGAG
CGCAGGCCGTGGTGGCGACGCAAGAAGTGGAGACACGCCTTACGCCTCTG
GTTCCTACGACGGCGACGATGAGGATAGCGACGAGATCATTTTCTCGGAA
TTTCCTAGCGAGGAGGTAGAGGATGATTTGGTGGGCGATGGAGACGAGTG
GAGATATCCCGCAGATGAGGATCAGCGGGTCGGCGCTTCTAAGCGGACCG
ATCGTGGGAGTTTCGGTGGGCAGGGTGTGGGGGGGAGAGGGCTTGTCGAG
CGATCGACAGAGGAGTTGCATGAGAAGCCG
back to top