mRNA_S-dermatodea_contig8473.16643.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8473.16643.1
Unique NamemRNA_S-dermatodea_contig8473.16643.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8473.16643.1 vs. uniprot
Match: D7FWE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.660e-23
Identity = 60/115 (52.17%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    1 LPAAIRSREPDPYLTKAELVKIVQWKLWIGVVRPNLLRFATETSPEKVTN------------------------SMEVLRYAITALTSELKGVGPATASAVLSAVSGGCPFDADE 273
            LPAA+ SR   PYL K ELVK+VQWKLWIG +RP+LL+ A ETSP  V                          S E +  A+ ALT +L GVGPATASAVL+A  GGCPFDADE
Sbjct:   56 LPAALVSRGATPYLLKDELVKVVQWKLWIGQMRPSLLQRAKETSPSTVKAKSTLAFQQLPRPSLPSSPTAAARASPEAVSRAVNALTKDLYGVGPATASAVLAAGCGGCPFDADE 170          
BLAST of mRNA_S-dermatodea_contig8473.16643.1 vs. uniprot
Match: A0A8K1C7J3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7J3_PYTOL)

HSP 1 Score: 79.0 bits (193), Expect = 8.280e-16
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 LPAAIRSREPDPYLTKAELVKIVQWKLWIGVVRPNLLRFATETSPEKVTNSMEV---------LRYAITALTSELKGVGPATASAVLSAVSGGCPFDADE 273
            L AAIR+REP P++T+AELVK+++WKL  G  RP L++F T  S E+V  S            ++ AI AL + +KGVGPATASAVL+A     PF  DE
Sbjct:   44 LRAAIRAREPKPFVTQAELVKLMEWKLKKGKWRPQLMKFVTSLSDEEVKRSSTSAFAALKDGDVKKAIEALAA-MKGVGPATASAVLAAYDDNVPFMGDE 142          
BLAST of mRNA_S-dermatodea_contig8473.16643.1 vs. uniprot
Match: A0A059BQZ4_EUCGR (Uncharacterized protein n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059BQZ4_EUCGR)

HSP 1 Score: 75.9 bits (185), Expect = 2.830e-15
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 LPAAIRSREPDPYLTKAELVKIVQWKLWIGVVRPNLLRF-------ATETSPEKVTNSMEVLRYAITALTSELKGVGPATASAVLSAVSGG-CPFDADE 273
            LPA +R R+PDP+LT++EL +++QWKL  G  RP LL F       A E+S  K   S+  +  A++ LT  LKGVGPATASAVL+A +    PF +DE
Sbjct:   41 LPALLRGRDPDPFLTRSELAQLMQWKLARGKWRPRLLEFVLSLDEEAVESSSRKAFGSLPDVSKAVSELT-VLKGVGPATASAVLAAYAPDVAPFMSDE 138          
BLAST of mRNA_S-dermatodea_contig8473.16643.1 vs. uniprot
Match: A0A804P8G2_MAIZE (Uncharacterized protein n=2 Tax=Andropogoneae TaxID=147429 RepID=A0A804P8G2_MAIZE)

HSP 1 Score: 75.1 bits (183), Expect = 3.710e-15
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 LPAAIRSREPDPYLTKAELVKIVQWKLWIGVVRPNLLRFA-------TETSPEKVTNSMEVLRYAITALTSELKGVGPATASAVLSAVSGG-CPFDADE 273
            LPA +R R+PDP+L K ELV+++QWKL  G  RP L+ F         E++  K   ++  LR AIT LT  LKGVGPATASAVL+A +    PF +DE
Sbjct:   45 LPALLRCRDPDPFLAKPELVRLLQWKLSRGKWRPRLMDFVKGLDDAVVESASRKAFAALPDLRRAITELT-VLKGVGPATASAVLAAYAPDVAPFMSDE 142          
BLAST of mRNA_S-dermatodea_contig8473.16643.1 vs. uniprot
Match: A0A059BRN2_EUCGR (Uncharacterized protein n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059BRN2_EUCGR)

HSP 1 Score: 75.9 bits (185), Expect = 6.980e-15
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 LPAAIRSREPDPYLTKAELVKIVQWKLWIGVVRPNLLRF-------ATETSPEKVTNSMEVLRYAITALTSELKGVGPATASAVLSAVSGG-CPFDADE 273
            LPA +R R+PDP+LT++EL +++QWKL  G  RP LL F       A E+S  K   S+  +  A++ LT  LKGVGPATASAVL+A +    PF +DE
Sbjct:   41 LPALLRGRDPDPFLTRSELAQLMQWKLARGKWRPRLLEFVLSLDEEAVESSSRKAFGSLPDVSKAVSELT-VLKGVGPATASAVLAAYAPDVAPFMSDE 138          
BLAST of mRNA_S-dermatodea_contig8473.16643.1 vs. uniprot
Match: K7UAN2_MAIZE (DNA binding n=3 Tax=Andropogoneae TaxID=147429 RepID=K7UAN2_MAIZE)

HSP 1 Score: 75.1 bits (183), Expect = 7.970e-15
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 LPAAIRSREPDPYLTKAELVKIVQWKLWIGVVRPNLLRFA-------TETSPEKVTNSMEVLRYAITALTSELKGVGPATASAVLSAVSGG-CPFDADE 273
            LPA +R R+PDP+L K ELV+++QWKL  G  RP L+ F         E++  K   ++  LR AIT LT  LKGVGPATASAVL+A +    PF +DE
Sbjct:   45 LPALLRCRDPDPFLAKPELVRLLQWKLSRGKWRPRLMDFVKGLDDAVVESASRKAFAALPDLRRAITELT-VLKGVGPATASAVLAAYAPDVAPFMSDE 142          
BLAST of mRNA_S-dermatodea_contig8473.16643.1 vs. uniprot
Match: A0A2G5C7A9_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5C7A9_AQUCA)

HSP 1 Score: 74.3 bits (181), Expect = 2.670e-14
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 LPAAIRSREPDPYLTKAELVKIVQWKLWIGVVRPNLLRFAT-------ETSPEKVTNSMEVLRYAITALTSELKGVGPATASAVLSAVSGG-CPFDADE 273
            LP  I+SR P+PY+TK+EL K++QWKL  G  RP LL F +       +TS +K   ++  +  AI+ LT  LKGVGPATASAVL+A +    PF +DE
Sbjct:   41 LPLEIKSRNPNPYITKSELTKLMQWKLTRGKWRPRLLDFVSSLDENLVKTSSQKAFQTLPDVSKAISELT-VLKGVGPATASAVLAAFAPDVAPFMSDE 138          
BLAST of mRNA_S-dermatodea_contig8473.16643.1 vs. uniprot
Match: J3LSG1_ORYBR (Uncharacterized protein n=6 Tax=Oryzeae TaxID=147380 RepID=J3LSG1_ORYBR)

HSP 1 Score: 73.9 bits (180), Expect = 3.930e-14
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 LPAAIRSREPDPYLTKAELVKIVQWKLWIGVVRPNLLRFA-------TETSPEKVTNSMEVLRYAITALTSELKGVGPATASAVLSAVS-GGCPFDADE 273
            LP  +R R+PDP+L K ELV+++QWKL  G  RP L+ F         E++  K   ++  LR AIT LT+ LKG+GPATASA+L+A +    PF +DE
Sbjct:   45 LPPLLRRRDPDPFLAKPELVRLLQWKLSRGKWRPRLMDFVKGLEDAVVESASRKAFAALPDLRKAITELTA-LKGIGPATASAILAAYAPDAAPFMSDE 142          
BLAST of mRNA_S-dermatodea_contig8473.16643.1 vs. uniprot
Match: A0A5D6XFR8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFR8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.770e-14
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:    1 LPAAIRSREPDPYLTKAELVKIVQWKLWIGVVRPNLLRFATETSPEKVTNSM---------EVLRYAITALTSELKGVGPATASAVLSAVSGGCPFDADE 273
            LP  +R+REP P+LT+AEL ++++WKL  G  RP L++F    S   V  +          + L  A+ AL SELKGVGPATASAVL+A     PF ADE
Sbjct:   44 LPQTLRAREPAPFLTQAELARLMRWKLTKGKWRPQLMKFIDGLSDVAVRAASTKAFAELKSDALMRAVQAL-SELKGVGPATASAVLAAYDNMAPFMADE 142          
BLAST of mRNA_S-dermatodea_contig8473.16643.1 vs. uniprot
Match: A0A0K9Q4J2_ZOSMR (Uncharacterized protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9Q4J2_ZOSMR)

HSP 1 Score: 73.2 bits (178), Expect = 6.440e-14
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    1 LPAAIRSREPDPYLTKAELVKIVQWKLWIGVVRPNLLRFATETSPEKVTN-------SMEVLRYAITALTSELKGVGPATASAVLSAVSGG-CPFDADE 273
            LP AI+SR+P PY+TK+E+ ++++WKL  G  RP LL F T  S E+V +       S+  L  AI+ LT  LKGVGPATASAVL+A +    PF +DE
Sbjct:   41 LPVAIQSRKPVPYITKSEISQLMKWKLSRGKWRPRLLDFVTSLSEEEVESASKKAFGSLPDLAKAISELT-VLKGVGPATASAVLAAYAPDIAPFMSDE 138          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8473.16643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWE0_ECTSI1.660e-2352.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1C7J3_PYTOL8.280e-1649.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A059BQZ4_EUCGR2.830e-1548.48Uncharacterized protein n=1 Tax=Eucalyptus grandis... [more]
A0A804P8G2_MAIZE3.710e-1549.49Uncharacterized protein n=2 Tax=Andropogoneae TaxI... [more]
A0A059BRN2_EUCGR6.980e-1548.48Uncharacterized protein n=2 Tax=Eucalyptus grandis... [more]
K7UAN2_MAIZE7.970e-1549.49DNA binding n=3 Tax=Andropogoneae TaxID=147429 Rep... [more]
A0A2G5C7A9_AQUCA2.670e-1448.48Uncharacterized protein n=1 Tax=Aquilegia coerulea... [more]
J3LSG1_ORYBR3.930e-1446.46Uncharacterized protein n=6 Tax=Oryzeae TaxID=1473... [more]
A0A5D6XFR8_9STRA5.770e-1447.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0K9Q4J2_ZOSMR6.440e-1449.49Uncharacterized protein n=1 Tax=Zostera marina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8473contigS-dermatodea_contig8473:4576..5559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score78.2
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog4558.Sb01g009410.1
EggNOG free text desc.Helix-hairpin-helix DNA-binding motif class 1
EggNOG OGs28ITR@1,2QR55@2759,37NBB@33090,3GBRH@35493,3I987@38820,3KQKU@4447
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_004040.1
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.7644532-CDS-S-dermatodea_contig8473:4575..47461622925345.7644532-CDS-S-dermatodea_contig8473:4575..4746Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8473 4576..4746 +
1694079870.9265945-CDS-S-dermatodea_contig8473:4575..47461694079870.9265945-CDS-S-dermatodea_contig8473:4575..4746Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8473 4576..4746 +
1622925345.775309-CDS-S-dermatodea_contig8473:5457..55591622925345.775309-CDS-S-dermatodea_contig8473:5457..5559Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8473 5458..5559 +
1694079870.9397683-CDS-S-dermatodea_contig8473:5457..55591694079870.9397683-CDS-S-dermatodea_contig8473:5457..5559Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8473 5458..5559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8473.16643.1prot_S-dermatodea_contig8473.16643.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8473 4576..5559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8473.16643.1

>prot_S-dermatodea_contig8473.16643.1 ID=prot_S-dermatodea_contig8473.16643.1|Name=mRNA_S-dermatodea_contig8473.16643.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp
LPAAIRSREPDPYLTKAELVKIVQWKLWIGVVRPNLLRFATETSPEKVTN
SMEVLRYAITALTSELKGVGPATASAVLSAVSGGCPFDADE
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mRNA from alignment at S-dermatodea_contig8473:4576..5559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8473.16643.1 ID=mRNA_S-dermatodea_contig8473.16643.1|Name=mRNA_S-dermatodea_contig8473.16643.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=984bp|location=Sequence derived from alignment at S-dermatodea_contig8473:4576..5559+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCCGGCCGCGATTCGTTCTCGCGAGCCAGACCCGTACCTAACGAAGGC GGAGCTGGTGAAGATCGTGCAGTGGAAGTTGTGGATCGGAGTGGTGCGGC CCAACCTGTTACGCTTCGCCACGGAGACCAGCCCCGAAAAGGTAACTAAC TCTATGGAGGTCTTACGTTATGTATGATGTGGTGGGGTCATATTACGGAG GTACACTATAATCAAGTAATCAGGACCAATTGTGAGGACCATGAAAGCCC AACCGTTAGTTCCGGCCATCAACACCCAAACAAACAAAAGATTTCCCTCA TGAAAACAAAAACGTGAGGTCTGGCCTTTATATCAAACATCGACCATGAA TACCCAATAATTTCATAATTTCTGGCCTCTACGTTTTTTTTAAGGTGAGG TTTATGACGAATTTGGACCTAATAACTATGGTCTTCCGTAATATTAATAT TAGAAATGTCACTGTCTGGGTGGAGGTGTGGCAATTACAACTACAATACA AGTATAATGTAACTCTGAAAATTGCGTGCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCACAACCCCCCACCCCCCACAACCCAACCACCCCCGCCGAA CACCACCCCCACCACCACACCCCCCCCCCACCCCCCCCNNNNNNNNNNTT ATAAAATTAATTTTTGTGGTTGTGGGTTTGCAATTATACATAATCAAACA AAAAAATTAATACTTTAAAATTTGGCGCCCCCCCCCCCCCCCCCCTCCCC GCAATGATCCCGCCGCAGGTGAAAACCAAAAGCCGCGAGGCGTTTCGACA CCTTCCCACACTATCTGCGCCCTCCGAATCCGACTCGCCACCGGAAACCG TCGCTCGCGTCGCCTCGGCCGCGTTGAAAAAGGCGATAACGGCTCTCACA TCGGAGCTGAAGGGCGTCGGGCCTGCGACAGCCTCCGCGGTCCTTTCCGC GGTTAGCGGCGGGTGTCCCTTCGACGCCGACGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8473:4576..5559+

>mRNA_S-dermatodea_contig8473.16643.1 ID=mRNA_S-dermatodea_contig8473.16643.1|Name=mRNA_S-dermatodea_contig8473.16643.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig8473:4576..5559+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCCGGCCGCGATTCGTTCTCGCGAGCCAGACCCGTACCTAACGAAGGC
GGAGCTGGTGAAGATCGTGCAGTGGAAGTTGTGGATCGGAGTGGTGCGGC
CCAACCTGTTACGCTTCGCCACGGAGACCAGCCCCGAAAAGGTAACTAAC
TCTATGGAGGTCTTACGTTATTTGCCGGCCGCGATTCGTTCTCGCGAGCC
AGACCCGTACCTAACGAAGGCGGAGCTGGTGAAGATCGTGCAGTGGAAGT
TGTGGATCGGAGTGGTGCGGCCCAACCTGTTACGCTTCGCCACGGAGACC
AGCCCCGAAAAGGTAACTAACTCTATGGAGGTCTTACGTTATGCGATAAC
GGCTCTCACATCGGAGCTGAAGGGCGTCGGGCCTGCGACAGCCTCCGCGG
TCCTTTCCGCGGTTAGCGGCGGGTGTCCCTTCGACGCCGACGAGGCGATA
ACGGCTCTCACATCGGAGCTGAAGGGCGTCGGGCCTGCGACAGCCTCCGC
GGTCCTTTCCGCGGTTAGCGGCGGGTGTCCCTTCGACGCCGACGAG
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