mRNA_S-dermatodea_contig8471.16641.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8471.16641.1
Unique NamemRNA_S-dermatodea_contig8471.16641.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8471.16641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8471contigS-dermatodea_contig8471:5892..6959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8471.16641.1prot_S-dermatodea_contig8471.16641.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8471 5974..6938 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.5913575-UTR-S-dermatodea_contig8471:5891..59731622925345.5913575-UTR-S-dermatodea_contig8471:5891..5973Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8471 5892..5973 -
1694079870.8299558-UTR-S-dermatodea_contig8471:5891..59731694079870.8299558-UTR-S-dermatodea_contig8471:5891..5973Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8471 5892..5973 -
1622925345.6299193-UTR-S-dermatodea_contig8471:6938..69591622925345.6299193-UTR-S-dermatodea_contig8471:6938..6959Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8471 6939..6959 -
1694079870.8597932-UTR-S-dermatodea_contig8471:6938..69591694079870.8597932-UTR-S-dermatodea_contig8471:6938..6959Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8471 6939..6959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.6051748-CDS-S-dermatodea_contig8471:5973..60881622925345.6051748-CDS-S-dermatodea_contig8471:5973..6088Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8471 5974..6088 -
1694079870.8416412-CDS-S-dermatodea_contig8471:5973..60881694079870.8416412-CDS-S-dermatodea_contig8471:5973..6088Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8471 5974..6088 -
1622925345.6183913-CDS-S-dermatodea_contig8471:6846..69381622925345.6183913-CDS-S-dermatodea_contig8471:6846..6938Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8471 6847..6938 -
1694079870.8508277-CDS-S-dermatodea_contig8471:6846..69381694079870.8508277-CDS-S-dermatodea_contig8471:6846..6938Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8471 6847..6938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8471.16641.1

>prot_S-dermatodea_contig8471.16641.1 ID=prot_S-dermatodea_contig8471.16641.1|Name=mRNA_S-dermatodea_contig8471.16641.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=69bp
MASRRAARPRPVAREREAGMTKTTRTTTRQSNLRRSSGLGTPRQARIKGD
LAFEGTPSCLWSLPHVFS*
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mRNA from alignment at S-dermatodea_contig8471:5892..6959-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8471.16641.1 ID=mRNA_S-dermatodea_contig8471.16641.1|Name=mRNA_S-dermatodea_contig8471.16641.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1068bp|location=Sequence derived from alignment at S-dermatodea_contig8471:5892..6959- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTCTGTCGAAAACTTGACAGATGGCGAGTCGTCGGGCCGCTCGACCTCG
TCCCGTGGCAAGGGAAAGAGAGGCAGGGATGACGAAGACGACTCGGACGA
CGACCAGGCAGAGGTGAGGCAAACCAAAGTTTAGAATACTCACCGGCGCG
AGCTCTACTAGCTTTGATTGTTTGCCCTGATTCCCCCTATTGTATGATAG
GAGCTATGTAGCTTGCCGGTTCTCACAGTCCCAGTTTCGATTGAATCATT
TTACGATTCCAGAAATTCCCCACCCGGGCGGGCGATTCTTGAGGTTCTTG
TTTCGTTTTATTTTTGTACGTGCTCATTGCGGTTGCAGAAATCGTGACTG
ACGGGGCAAAGCGCCTCCCAGAAAGAATTGTGTTTTGTGGATAATAAAAG
CTGTCGCACCTCAGCTGCGACTCCTTTGCTCCCCCCTTTCAATTTCGGCG
GCTATCTACACAAAGATTATCATCGACTTCTGCAGTGGCGACTCGGGTAT
TTTCCCTCACGCGGCCCTGGTGCTCGTCTTCCTAATAGTAACTGTCCTCA
GCAGCACGCCCTCTTTTCTTTCCGTTGCTGCCGGAGGAGGACGAGTGGTC
CAAAGGCTCGTAACTAGTATTTGGACCACTCTTCCTCCTCCCATGTCAAG
AGAAAGAAAAGAGGGCGTGGTTCTGAGGGCAGTGATGATGAGGAAGAAAA
CCAGGGCCACGTGAGGGCAAATGTACGTTCAGAAATAGCTGACTTTAAAA
CGTAGATCGAGCGTTGGGGTCTAACTTTTAGCAAGGAGGAAATATGGGCC
AAGCTAACACTATGTGCCCCTCCCTTCCCCCCAACCACGTTTTTCGTTAT
TATTTGCAATCGCCCCCCCAGCAATCTCCGAAGAAGCAGCGGGCTGGGCA
CGCCTAGGCAAGCGAGGATCAAGGGCGACCTTGCTTTCGAAGGCACGCCC
TCTTGCCTCTGGAGTCTTCCCCATGTTTTTTCTTAGTACGGCGAATGGCC
ATCGCTCGTACAAGTATGTGAGTGGCATCGCACCTTTGCGCGATCAAAAC
ATCGCAGTGGCCTATAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8471:5892..6959-

>mRNA_S-dermatodea_contig8471.16641.1 ID=mRNA_S-dermatodea_contig8471.16641.1|Name=mRNA_S-dermatodea_contig8471.16641.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at S-dermatodea_contig8471:5892..6959- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGAGTCGTCGGGCCGCTCGACCTCGTCCCGTGGCAAGGGAAAGAGA
GGCAGGGATGACGAAGACGACTCGGACGACGACCAGGCAGAGATGGCGAG
TCGTCGGGCCGCTCGACCTCGTCCCGTGGCAAGGGAAAGAGAGGCAGGGA
TGACGAAGACGACTCGGACGACGACCAGGCAGAGCAATCTCCGAAGAAGC
AGCGGGCTGGGCACGCCTAGGCAAGCGAGGATCAAGGGCGACCTTGCTTT
CGAAGGCACGCCCTCTTGCCTCTGGAGTCTTCCCCATGTTTTTTCTTAGC
AATCTCCGAAGAAGCAGCGGGCTGGGCACGCCTAGGCAAGCGAGGATCAA
GGGCGACCTTGCTTTCGAAGGCACGCCCTCTTGCCTCTGGAGTCTTCCCC
ATGTTTTTTCTTAG
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