mRNA_S-dermatodea_contig84704.16639.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84704.16639.1
Unique NamemRNA_S-dermatodea_contig84704.16639.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84704.16639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84704contigS-dermatodea_contig84704:30..675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size647
Cds size468
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.5357316-UTR-S-dermatodea_contig84704:29..2071622925345.5357316-UTR-S-dermatodea_contig84704:29..207Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84704 30..207 +
1694079870.8089771-UTR-S-dermatodea_contig84704:29..2071694079870.8089771-UTR-S-dermatodea_contig84704:29..207Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84704 30..207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.5505042-CDS-S-dermatodea_contig84704:207..6751622925345.5505042-CDS-S-dermatodea_contig84704:207..675Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84704 208..675 +
1694079870.819005-CDS-S-dermatodea_contig84704:207..6751694079870.819005-CDS-S-dermatodea_contig84704:207..675Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84704 208..675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84704.16639.1prot_S-dermatodea_contig84704.16639.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84704 208..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84704.16639.1

>prot_S-dermatodea_contig84704.16639.1 ID=prot_S-dermatodea_contig84704.16639.1|Name=mRNA_S-dermatodea_contig84704.16639.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=156bp
MTQSSALLRVHEHLDTSSWCARCDAAALLRSRVMSMCRQQDVVLACDVGP
KVPSPKCENLLNGAFVPLLAVLLEEDLMGRALSNRRLWGRGSCAKSYAPA
KRVLYVGLLVRSTSCDRVRECACDRQRVALPRVVNGRSGRPTAVTYCCTH
IPPEGR
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mRNA from alignment at S-dermatodea_contig84704:30..675+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84704.16639.1 ID=mRNA_S-dermatodea_contig84704.16639.1|Name=mRNA_S-dermatodea_contig84704.16639.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=646bp|location=Sequence derived from alignment at S-dermatodea_contig84704:30..675+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGATCATCAAATACCCTGGCACTCGGCCACTTCGAGTGCCAGGATCTGCC
CTGCAAGGACGGCTGCGGAGCTGACCTTGAAGGTATGCTGGTGTGGGTGT
GTCGCCGTTGTATTTGGCGTCGCAAGTCCGTGGGAAAAGCGTGCATAAAC
AAGAGAAACACGAAACACATACACACACATGACACAAAGCAGTGCGCTCC
TGAGGGTGCATGAACACCTGGATACCAGCTCATGGTGTGCGCGATGTGAC
GCAGCGGCGTTGTTGCGTTCTCGCGTTATGAGCATGTGTAGACAACAAGA
TGTTGTGTTGGCCTGTGATGTGGGTCCAAAAGTTCCCAGTCCGAAGTGCG
AGAATCTTTTGAACGGTGCTTTTGTTCCTTTGCTCGCTGTGTTGTTGGAA
GAGGATTTAATGGGCCGAGCTCTTTCTAACCGCCGCCTTTGGGGACGTGG
CTCCTGCGCGAAATCGTATGCTCCCGCAAAGAGAGTCTTGTATGTTGGAC
TACTTGTAAGAAGCACATCGTGCGACCGAGTAAGGGAATGTGCTTGTGAT
CGACAGCGTGTGGCGTTACCCCGTGTAGTAAACGGCAGGTCAGGAAGACC
AACAGCAGTTACCTACTGCTGTACACACATCCCGCCGGAAGGACGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig84704:30..675+

>mRNA_S-dermatodea_contig84704.16639.1 ID=mRNA_S-dermatodea_contig84704.16639.1|Name=mRNA_S-dermatodea_contig84704.16639.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at S-dermatodea_contig84704:30..675+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACACAAAGCAGTGCGCTCCTGAGGGTGCATGAACACCTGGATACCAG
CTCATGGTGTGCGCGATGTGACGCAGCGGCGTTGTTGCGTTCTCGCGTTA
TGAGCATGTGTAGACAACAAGATGTTGTGTTGGCCTGTGATGTGGGTCCA
AAAGTTCCCAGTCCGAAGTGCGAGAATCTTTTGAACGGTGCTTTTGTTCC
TTTGCTCGCTGTGTTGTTGGAAGAGGATTTAATGGGCCGAGCTCTTTCTA
ACCGCCGCCTTTGGGGACGTGGCTCCTGCGCGAAATCGTATGCTCCCGCA
AAGAGAGTCTTGTATGTTGGACTACTTGTAAGAAGCACATCGTGCGACCG
AGTAAGGGAATGTGCTTGTGATCGACAGCGTGTGGCGTTACCCCGTGTAG
TAAACGGCAGGTCAGGAAGACCAACAGCAGTTACCTACTGCTGTACACAC
ATCCCGCCGGAAGGACGTATGACACAAAGCAGTGCGCTCCTGAGGGTGCA
TGAACACCTGGATACCAGCTCATGGTGTGCGCGATGTGACGCAGCGGCGT
TGTTGCGTTCTCGCGTTATGAGCATGTGTAGACAACAAGATGTTGTGTTG
GCCTGTGATGTGGGTCCAAAAGTTCCCAGTCCGAAGTGCGAGAATCTTTT
GAACGGTGCTTTTGTTCCTTTGCTCGCTGTGTTGTTGGAAGAGGATTTAA
TGGGCCGAGCTCTTTCTAACCGCCGCCTTTGGGGACGTGGCTCCTGCGCG
AAATCGTATGCTCCCGCAAAGAGAGTCTTGTATGTTGGACTACTTGTAAG
AAGCACATCGTGCGACCGAGTAAGGGAATGTGCTTGTGATCGACAGCGTG
TGGCGTTACCCCGTGTAGTAAACGGCAGGTCAGGAAGACCAACAGCAGTT
ACCTACTGCTGTACACACATCCCGCCGGAAGGACGT
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