mRNA_S-dermatodea_contig847.16637.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig847.16637.1
Unique NamemRNA_S-dermatodea_contig847.16637.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig847.16637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig847contigS-dermatodea_contig847:12329..12940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size612
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig847.16637.1prot_S-dermatodea_contig847.16637.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig847 12517..12870 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.3896575-UTR-S-dermatodea_contig847:12328..125161622925345.3896575-UTR-S-dermatodea_contig847:12328..12516Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig847 12329..12516 +
1694079870.7007663-UTR-S-dermatodea_contig847:12328..125161694079870.7007663-UTR-S-dermatodea_contig847:12328..12516Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig847 12329..12516 +
1622925345.411105-UTR-S-dermatodea_contig847:12870..129401622925345.411105-UTR-S-dermatodea_contig847:12870..12940Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig847 12871..12940 +
1694079870.7294605-UTR-S-dermatodea_contig847:12870..129401694079870.7294605-UTR-S-dermatodea_contig847:12870..12940Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig847 12871..12940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.3994741-CDS-S-dermatodea_contig847:12516..128701622925345.3994741-CDS-S-dermatodea_contig847:12516..12870Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig847 12517..12870 +
1694079870.7155235-CDS-S-dermatodea_contig847:12516..128701694079870.7155235-CDS-S-dermatodea_contig847:12516..12870Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig847 12517..12870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig847.16637.1

>prot_S-dermatodea_contig847.16637.1 ID=prot_S-dermatodea_contig847.16637.1|Name=mRNA_S-dermatodea_contig847.16637.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
METSGRHLPQTHSRHHRNRKPGSTHERHTGRRLPLRMPDAKVPPPPSRHR
SIRSIELSIRSSINVTKQSINRPMTCVYRTLNIDIPHRSLVRLKIRLRVY
ISQHSDTACAFTPCDLT*
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mRNA from alignment at S-dermatodea_contig847:12329..12940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig847.16637.1 ID=mRNA_S-dermatodea_contig847.16637.1|Name=mRNA_S-dermatodea_contig847.16637.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig847:12329..12940+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCAAGGTCCATGATTTAAGGAGACAGAACAATCCCTTTTACATTTCTC
CGACCGATTATCTTACCATGCAAAAGACCAATACCCGCGCTTTGACAAAA
TTCAGATTCCAACTCTAGAATCCACCCCTTTGTACTTTACTTCCATATCT
TTGGTCACGAAGGTATCGTCACTCCCCAACGTGGGGAAATGGAAACCTCG
GGGAGGCATCTCCCCCAAACTCACTCACGACATCATCGCAACAGGAAGCC
GGGAAGCACCCACGAGCGACACACAGGGAGACGTCTTCCGTTGCGAATGC
CTGATGCAAAGGTTCCGCCTCCCCCGTCTCGTCACCGATCGATCAGATCA
ATCGAGCTATCCATTCGATCATCAATAAATGTAACCAAGCAGTCAATAAA
CCGCCCAATGACGTGCGTTTATCGAACGTTGAACATTGATATCCCACACC
GTTCTTTGGTCCGGCTGAAAATCCGGTTGCGCGTCTACATAAGCCAACAT
TCCGACACCGCCTGCGCGTTCACCCCGTGCGACCTTACGTAACCCTGGCG
ACAATTCGACTGGTGACCATCTGACTTCCATTTCCCTTCTATCTGTATTA
TATCGGCTGACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig847:12329..12940+

>mRNA_S-dermatodea_contig847.16637.1 ID=mRNA_S-dermatodea_contig847.16637.1|Name=mRNA_S-dermatodea_contig847.16637.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig847:12329..12940+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAACCTCGGGGAGGCATCTCCCCCAAACTCACTCACGACATCATCG
CAACAGGAAGCCGGGAAGCACCCACGAGCGACACACAGGGAGACGTCTTC
CGTTGCGAATGCCTGATGCAAAGGTTCCGCCTCCCCCGTCTCGTCACCGA
TCGATCAGATCAATCGAGCTATCCATTCGATCATCAATAAATGTAACCAA
GCAGTCAATAAACCGCCCAATGACGTGCGTTTATCGAACGTTGAACATTG
ATATCCCACACCGTTCTTTGGTCCGGCTGAAAATCCGGTTGCGCGTCTAC
ATAAGCCAACATTCCGACACCGCCTGCGCGTTCACCCCGTGCGACCTTAC
GTAAATGGAAACCTCGGGGAGGCATCTCCCCCAAACTCACTCACGACATC
ATCGCAACAGGAAGCCGGGAAGCACCCACGAGCGACACACAGGGAGACGT
CTTCCGTTGCGAATGCCTGATGCAAAGGTTCCGCCTCCCCCGTCTCGTCA
CCGATCGATCAGATCAATCGAGCTATCCATTCGATCATCAATAAATGTAA
CCAAGCAGTCAATAAACCGCCCAATGACGTGCGTTTATCGAACGTTGAAC
ATTGATATCCCACACCGTTCTTTGGTCCGGCTGAAAATCCGGTTGCGCGT
CTACATAAGCCAACATTCCGACACCGCCTGCGCGTTCACCCCGTGCGACC
TTACGTAA
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