mRNA_S-dermatodea_contig84651.16635.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84651.16635.1
Unique NamemRNA_S-dermatodea_contig84651.16635.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig84651.16635.1 vs. uniprot
Match: A0A7S6U9U2_9STRA (Photosystem I reaction center subunit IX n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9U2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.130e-22
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1
Query:    1 MDNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSLTFPVF 126
            MDNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSLTFPVF
Sbjct:    1 MDNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSLTFPVF 42          
BLAST of mRNA_S-dermatodea_contig84651.16635.1 vs. uniprot
Match: A0A6B9TNI1_SARFS (Photosystem I reaction center subunit IX n=2 Tax=Fucales TaxID=3009 RepID=A0A6B9TNI1_SARFS)

HSP 1 Score: 79.7 bits (195), Expect = 5.230e-19
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1
Query:    1 MDNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSLTFPVF 126
            M N LKYLSTAPVLL +WMTFTAGFIIE NRFYPD+LTFPVF
Sbjct:    1 MKNFLKYLSTAPVLLAVWMTFTAGFIIEANRFYPDALTFPVF 42          
BLAST of mRNA_S-dermatodea_contig84651.16635.1 vs. uniprot
Match: D1J7A9_ECTSI (Photosystem I reaction center subunit IX n=51 Tax=Phaeophyceae TaxID=2870 RepID=D1J7A9_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.040e-18
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 MDNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSLTFPVF 126
            M+N LKYLSTAPVL   WMTFTAGFIIE NRFYPD+LTFPVF
Sbjct:    1 MENFLKYLSTAPVLFVAWMTFTAGFIIEANRFYPDALTFPVF 42          
BLAST of mRNA_S-dermatodea_contig84651.16635.1 vs. uniprot
Match: B7T1S9_VAULI (Photosystem I reaction center subunit IX n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1S9_VAULI)

HSP 1 Score: 77.0 bits (188), Expect = 6.130e-18
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 MDNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSLTFPVF 126
            M+N  KYLSTAP+LLT WMTFTAGFIIE NRFYPD+LTFP F
Sbjct:    1 MENFFKYLSTAPILLTAWMTFTAGFIIEANRFYPDALTFPSF 42          
BLAST of mRNA_S-dermatodea_contig84651.16635.1 vs. uniprot
Match: K9ZWK2_9STRA (Photosystem I reaction center subunit IX n=14 Tax=Eustigmatophyceae TaxID=5747 RepID=K9ZWK2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.650e-17
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 MDNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSLTFP 120
            M + LKYLSTAPVLLT W+TFTAGF+IE+NRFYPD+LTFP
Sbjct:    5 MKDFLKYLSTAPVLLTAWLTFTAGFVIEINRFYPDALTFP 44          
BLAST of mRNA_S-dermatodea_contig84651.16635.1 vs. uniprot
Match: F3Y7I1_FISSO (Photosystem I reaction center subunit IX n=5 Tax=Bacillariophycidae TaxID=33850 RepID=F3Y7I1_FISSO)

HSP 1 Score: 70.9 bits (172), Expect = 1.670e-15
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:    1 MDNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSLTF 117
            M++  KYLSTAPVLLTIWMTFTAGFIIE+NRF+PDSL F
Sbjct:    1 MESFKKYLSTAPVLLTIWMTFTAGFIIEINRFFPDSLGF 39          
BLAST of mRNA_S-dermatodea_contig84651.16635.1 vs. uniprot
Match: A0A089VPX9_CERBC (Photosystem I reaction center subunit IX n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A089VPX9_CERBC)

HSP 1 Score: 70.9 bits (172), Expect = 1.670e-15
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1
Query:    1 MDNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSL 111
            M+N LKYLSTAPVLLT+WMTFTAGFIIE+NRF+PD L
Sbjct:    1 MNNFLKYLSTAPVLLTLWMTFTAGFIIEINRFFPDML 37          
BLAST of mRNA_S-dermatodea_contig84651.16635.1 vs. uniprot
Match: A0A7T8JKC2_9CRYP (Photosystem I reaction center subunit IX n=1 Tax=Cryptophyta sp. CCMP2293 TaxID=697907 RepID=A0A7T8JKC2_9CRYP)

HSP 1 Score: 69.3 bits (168), Expect = 6.950e-15
Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    4 DNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSLTFPV 123
            +NLLKYLSTAPVL+T+WM+FTA F+IE NRF+PD L FP+
Sbjct:    3 NNLLKYLSTAPVLITVWMSFTAAFVIEANRFFPDMLYFPM 42          
BLAST of mRNA_S-dermatodea_contig84651.16635.1 vs. uniprot
Match: PSAJ_PHATC (Photosystem I reaction center subunit IX n=8 Tax=Bacillariophyta TaxID=2836 RepID=PSAJ_PHATC)

HSP 1 Score: 68.2 bits (165), Expect = 1.960e-14
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1
Query:    1 MDNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSL 111
            M+N  KYLSTAPVLLTIW+TFTAGFIIE+NRF+PD L
Sbjct:    1 MENFQKYLSTAPVLLTIWLTFTAGFIIEINRFFPDLL 37          
BLAST of mRNA_S-dermatodea_contig84651.16635.1 vs. uniprot
Match: PSAJ_GUITH (Photosystem I reaction center subunit IX n=3 Tax=Guillardia theta TaxID=55529 RepID=PSAJ_GUITH)

HSP 1 Score: 67.8 bits (164), Expect = 2.840e-14
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:    4 DNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSLTFPV 123
            +N LKYLSTAPVLLTIW++FTA  +IE NRFYPD L FP+
Sbjct:    3 NNFLKYLSTAPVLLTIWLSFTAALVIEANRFYPDMLYFPI 42          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84651.16635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6U9U2_9STRA1.130e-22100.00Photosystem I reaction center subunit IX n=1 Tax=S... [more]
A0A6B9TNI1_SARFS5.230e-1985.71Photosystem I reaction center subunit IX n=2 Tax=F... [more]
D1J7A9_ECTSI3.040e-1883.33Photosystem I reaction center subunit IX n=51 Tax=... [more]
B7T1S9_VAULI6.130e-1880.95Photosystem I reaction center subunit IX n=1 Tax=V... [more]
K9ZWK2_9STRA7.650e-1780.00Photosystem I reaction center subunit IX n=14 Tax=... [more]
F3Y7I1_FISSO1.670e-1582.05Photosystem I reaction center subunit IX n=5 Tax=B... [more]
A0A089VPX9_CERBC1.670e-1583.78Photosystem I reaction center subunit IX n=4 Tax=B... [more]
A0A7T8JKC2_9CRYP6.950e-1572.50Photosystem I reaction center subunit IX n=1 Tax=C... [more]
PSAJ_PHATC1.960e-1481.08Photosystem I reaction center subunit IX n=8 Tax=B... [more]
PSAJ_GUITH2.840e-1472.50Photosystem I reaction center subunit IX n=3 Tax=G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84651contigS-dermatodea_contig84651:518..646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog2880.D1J7A9
Preferred namepsaJ
KEGG koko:K02697
KEGG Pathwayko00195,ko01100,map00195,map01100
EggNOG free text desc.photosynthesis
EggNOG OGs2EGDF@1,2SEIN@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorysignal peptide
Exons1
Model size129
Cds size129
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.316464-CDS-S-dermatodea_contig84651:517..6461622925345.316464-CDS-S-dermatodea_contig84651:517..646Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84651 518..646 -
1694079870.645408-CDS-S-dermatodea_contig84651:517..6461694079870.645408-CDS-S-dermatodea_contig84651:517..646Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84651 518..646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84651.16635.1prot_S-dermatodea_contig84651.16635.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84651 518..646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84651.16635.1

>prot_S-dermatodea_contig84651.16635.1 ID=prot_S-dermatodea_contig84651.16635.1|Name=mRNA_S-dermatodea_contig84651.16635.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp
MDNLLKYLSTAPVLLTIWMTFTAGFIIEVNRFYPDSLTFPVF*
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mRNA from alignment at S-dermatodea_contig84651:518..646-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84651.16635.1 ID=mRNA_S-dermatodea_contig84651.16635.1|Name=mRNA_S-dermatodea_contig84651.16635.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at S-dermatodea_contig84651:518..646- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACAATTTGCTAAAGTATCTTTCAACGGCTCCTGTATTATTAACTAT TTGGATGACATTTACAGCAGGATTTATTATTGAAGTAAACCGATTTTACC CTGATTCTTTAACATTTCCAGTATTTTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig84651:518..646-

>mRNA_S-dermatodea_contig84651.16635.1 ID=mRNA_S-dermatodea_contig84651.16635.1|Name=mRNA_S-dermatodea_contig84651.16635.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig84651:518..646- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACAATTTGCTAAAGTATCTTTCAACGGCTCCTGTATTATTAACTAT
TTGGATGACATTTACAGCAGGATTTATTATTGAAGTAAACCGATTTTACC
CTGATTCTTTAACATTTCCAGTATTTTAAATGGACAATTTGCTAAAGTAT
CTTTCAACGGCTCCTGTATTATTAACTATTTGGATGACATTTACAGCAGG
ATTTATTATTGAAGTAAACCGATTTTACCCTGATTCTTTAACATTTCCAG
TATTTTAA
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