mRNA_S-dermatodea_contig84602.16631.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 112 bits (279), Expect = 9.610e-27 Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = 1
Query: 4 LKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGGHPEV 249
L+S++W++ EQ L AR +G +VIQDNTCLTNRYN K+ LF+GVD+ENKT VFAQGFFS+E T +F +A ++ ICGGHP+V
Sbjct: 64 LRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNNKLCLFVGVDSENKTQVFAQGFFSNESTEAFDFANKFFLDICGGHPKV 145
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE) HSP 1 Score: 107 bits (266), Expect = 6.090e-25 Identity = 57/119 (47.90%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 1 RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNR------------------------------------YNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGGHPEV 249
RLK V WST +Q++ ARQ+G IV+QDNT LTNR Y M MLFIGVD+ENKT+VFAQGFFSD+ + ++ WAL HY TICGG PEV
Sbjct: 84 RLKHVFWSTGQQQVFARQWGGIVLQDNTALTNRVLVLIRLIFATGKMSDEHPVRLRFIQPRAFASRSCRYGMHFMLFIGVDSENKTVVFAQGFFSDQSSDTYQWALKHYCTICGGQPEV 202
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.560e-19 Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 1
Query: 4 LKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGG 237
L+S++W++ EQ + AR +G IVIQDNTCL NRY+ K+ LF+GVD+ENKT +FAQG S+EQ +SF +A + I GG
Sbjct: 837 LRSIMWASPEQIMLARTYGGIVIQDNTCLINRYDFKLCLFVGVDSENKTGIFAQGLLSNEQISSFDFANRFLLEIRGG 914
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A6I9SVE1_SESIN (Protein FAR1-RELATED SEQUENCE n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9SVE1_SESIN) HSP 1 Score: 69.3 bits (168), Expect = 1.080e-11 Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1
Query: 1 RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGGHP 243
RL++V W A R A FG ++ DNTCL+NRY + ++ F+GV+ + ++ G + E S++W +VT GHP
Sbjct: 273 RLRNVFWVDARARAANSYFGDVIFFDNTCLSNRYEIPLVAFVGVNHHGQPVLLGCGLLASETMESYIWLFKAWVTCTSGHP 353
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 2.040e-11 Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 1
Query: 1 RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGG---HPEVSRQETRTWC 276
RL +V W+TA+Q+ A +FG + D T NRY ++LF+GVD EN++ + QG E +F W L Y + GG P++ + T C
Sbjct: 255 RLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKMEQISAGTKC 349
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A835DCY8_9MAGN (Protein FAR1-RELATED SEQUENCE n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835DCY8_9MAGN) HSP 1 Score: 68.6 bits (166), Expect = 2.040e-11 Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 4 LKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGGH 240
L++V W+ A R A FG I++ D TCLTN+Y+M ++ F+GV+ ++++ G +DE SF+W ++ GH
Sbjct: 250 LRNVFWADARSRAACAYFGDIIMLDTTCLTNKYDMPLVYFLGVNHHGQSVLLGCGLLADETRESFIWLFKAWLKSVSGH 328
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 3.820e-11 Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1
Query: 1 RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGG 237
RL +V W+TA+Q+ A +FG + D T NRY ++LF+GVD EN++ + QG E +F W L Y + GG
Sbjct: 288 RLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGG 366
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A6H5JGK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK0_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 3.850e-11 Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1
Query: 1 RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGG 237
RL +V W+TA+Q+ A +FG + D T NRY ++LF+GVD EN++ + QG E +F W L Y + GG
Sbjct: 986 RLVNVFWATADQQERAARFGGCIQMDTTVFANRYRCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGG 1064
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: J3LUP5_ORYBR (Protein FAR1-RELATED SEQUENCE n=6 Tax=Oryza TaxID=4527 RepID=J3LUP5_ORYBR) HSP 1 Score: 65.9 bits (159), Expect = 1.800e-10 Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 4 LKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGGHP 243
L+SV W+ + R A + F V D TCL N++++ ++LF+GV+ + ++ G SDE T SFLW L ++T G P
Sbjct: 206 LRSVFWADSRSRAAHQYFNDAVWIDTTCLRNKFDIPLVLFLGVNHHGELVLLGCGLLSDESTESFLWLLKSWLTCMKGWP 285
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A2G5FA70_AQUCA (Protein FAR1-RELATED SEQUENCE n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5FA70_AQUCA) HSP 1 Score: 64.7 bits (156), Expect = 4.550e-10 Identity = 27/81 (33.33%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 1 RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGGHP 243
R+++V W+ + R+ FG +V D TCLTN+Y K++ F+GV+ ++++ +DE SFLW ++T+ G P
Sbjct: 260 RMRNVFWADTKARVDYAHFGDVVTFDTTCLTNKYETKIVSFVGVNHHGQSVLLGCALVTDETKASFLWVFRTWLTVMQGGP 340 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig84602.16631.1 >prot_S-dermatodea_contig84602.16631.1 ID=prot_S-dermatodea_contig84602.16631.1|Name=mRNA_S-dermatodea_contig84602.16631.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTback to top mRNA from alignment at S-dermatodea_contig84602:6..436+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig84602.16631.1 ID=mRNA_S-dermatodea_contig84602.16631.1|Name=mRNA_S-dermatodea_contig84602.16631.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=431bp|location=Sequence derived from alignment at S-dermatodea_contig84602:6..436+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig84602:6..436+ >mRNA_S-dermatodea_contig84602.16631.1 ID=mRNA_S-dermatodea_contig84602.16631.1|Name=mRNA_S-dermatodea_contig84602.16631.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig84602:6..436+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |